5CS1A

The structure of the nk1 fragment of hgf/sf
Total Genus 38
204060801001201401600510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
172
structure length
172
Chain Sequence
TIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYENKDYIRNCIIGKGRSYKGTVSITKSGIKCQPWSSMIPHEHSFLPSSYRGKDLQENYCRNPRGEEGGPWCFTSNPEVRYEVCDIPQCSEV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI6 (133-136)TIV2 (77-80)TI1 (54-57)S1 (42-52)TIV1 (52-55)S3 (86-90)AH1 (67-76)O1 (70-96)TI4 (102-105)S4 (95-99)TI2 (90-93)TI3 (91-94)TII3 (167-170)O3 (128-206)S5 (108-121)3H3 (164-166)TVIb1 (155-158)TI8 (151-154)3H2 (122-124)TII'1 (130-133)TIV3 (129-132)TVIII1 (156-159)TIV4 (168-171)S2 (60-63)3H1 (39-41)TII2 (105-108)TI7 (143-146)Updating...
connected with : NaN
molecule tags Hormone
source organism Homo sapiens
publication title Exploring the chemical space of the lysine-binding pocket of the first kringle domain of hepatocyte growth factor/scatter factor (HGF/SF) yields a new class of inhibitors of HGF/SF-MET binding.
pubmed doi rcsb
molecule keywords Hepatocyte growth factor
total genus 38
structure length 172
sequence length 172
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00024 PAN_1 PAN domain
A PF00051 Kringle Kringle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 5cs1A02
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 5cs1A01
4CIKA 3U73A 1KIVA 5HPGA 1I71A 1YXEA 1CEAA 5CT1A 2K4RA 3HN4A 5CT3A 1PK4A 1NL2A 5CP9A 4R19A 1HKYA 3SRJA 5I25A 1A0HA 1HPJA 3SRIA 3BT1A 3SP8A 3E6PL 1GMOA 2FEBA 2I9AA 1Z40A 2J8LA 4R1AA 5EOKA 4Z0FA 1PMLA 5CS1A 2Z8WA 4DURA 4A5TS 2DOIA 4BVWA 5COEA 2LL3A 1I5KA 5CS9A 3MKPA 2L0SA 2PF2A 2YIPA 1W8KA 3NXPA 4BV5A 2Q8AA 1GMNA 2YILA 4NZQA 2HGFA 1URKA 4R1CA 4BV7A 4APLA 3KIVA 4BVCA 5EODA 1KDUA 2LL4M 5CT2A 2X2ZA 4KIVA 2Z8VA 5CS5A 3ZWZA 2YIOA 2K13X 1CEBA 1PKRA 2Y8RA 1HPKA 1JFNA 2HPQP 2KNFA 1PMKA 4O03A 2F83A 1KRNA 3HMSA 3BT2A 2I9BA 3LAQA 2PK4A 2KJ4A 4R1BA 4D3CA 4IUAA 2DOHX 3HMRA 1I8NA 1TPKA 5CS3A 4HZHA 1NK1A 1W81A 3K65A 4UV6A 4APMA 1KI0A 2QJ4A 5CSQA 1NL1A 2PF1A 1B2IA 4Z09A 1BHTA 2J8JA 4Z0DA 4Z0EA 3ZLEA 4BVVA 2FD6A 3HMTA 1PK2A 2QJ2A 2Q8BA 2SPTA 4UAOA 2K51A 1GP9A 4BVDA 2HPPP
chains in the Genus database with same CATH superfamily
4CIKA 3U73A 1KIVA 5HPGA 1I71A 1YXEA 1CEAA 5CT1A 2K4RA 3HN4A 2KL5A 5CT3A 1PK4A 1NL2A 5CP9A 4R19A 1HKYA 3SRJA 5I25A 1A0HA 1HPJA 3SRIA 3BT1A 3SP8A 3E6PL 1GMOA 2FEBA 2I9AA 1Z40A 2J8LA 4R1AA 5EOKA 4Z0FA 1PMLA 5CS1A 2Z8WA 4DURA 4A5TS 2DOIA 4BVWA 5COEA 2LL3A 1I5KA 5CS9A 3MKPA 2L0SA 2PF2A 2YIPA 1W8KA 3NXPA 4BV5A 2Q8AA 1GMNA 2YILA 4NZQA 2HGFA 1URKA 4R1CA 4BV7A 4APLA 3KIVA 4BVCA 5EODA 4YIZA 1KDUA 2LL4M 5CT2A 2X2ZA 4KIVA 2Z8VA 5CS5A 3ZWZA 2YIOA 2K13X 1CEBA 1PKRA 2Y8RA 1HPKA 1JFNA 2HPQP 2KNFA 1PMKA 4O03A 2F83A 1KRNA 3HMSA 3BT2A 2I9BA 3LAQA 2PK4A 2KJ4A 4R1BA 4D3CA 4IUAA 2DOHX 3HMRA 1I8NA 1TPKA 5CS3A 4HZHA 1NK1A 1W81A 3K65A 4UV6A 4APMA 1KI0A 2QJ4A 5CSQA 1NL1A 2PF1A 1B2IA 4Z09A 1BHTA 2J8JA 4Z0DA 4Z0EA 3ZLEA 4BVVA 2FD6A 3HMTA 1PK2A 2QJ2A 4YIVA 2Q8BA 2SPTA 4UAOA 2K51A 1GP9A 4BVDA 2HPPP
chains in the Genus database with same CATH topology
4CIKA 3U73A 1KIVA 5HPGA 1I71A 1YXEA 1CEAA 5CT1A 2K4RA 3HN4A 2KL5A 5CT3A 1PK4A 1NL2A 5CP9A 4R19A 1HKYA 3SRJA 5I25A 1A0HA 1HPJA 3SRIA 3BT1A 3SP8A 3E6PL 1GMOA 2FEBA 2I9AA 1Z40A 2J8LA 4R1AA 5EOKA 4Z0FA 1PMLA 5CS1A 2Z8WA 4DURA 4A5TS 2DOIA 4BVWA 5COEA 2LL3A 1I5KA 5CS9A 3MKPA 2L0SA 2PF2A 2YIPA 1W8KA 3NXPA 4BV5A 2Q8AA 1GMNA 2YILA 4NZQA 2HGFA 1URKA 4R1CA 4BV7A 4APLA 3KIVA 4BVCA 5EODA 4YIZA 1KDUA 2LL4M 5CT2A 2X2ZA 4KIVA 2Z8VA 5CS5A 3ZWZA 2YIOA 2K13X 1CEBA 1PKRA 2Y8RA 1HPKA 1JFNA 2HPQP 2KNFA 1PMKA 4O03A 2F83A 1KRNA 3HMSA 3BT2A 2I9BA 3LAQA 2PK4A 2KJ4A 4R1BA 4D3CA 4IUAA 2DOHX 3HMRA 1I8NA 1TPKA 5CS3A 4HZHA 1NK1A 1W81A 3K65A 4UV6A 4APMA 1KI0A 2QJ4A 5CSQA 1NL1A 2PF1A 1B2IA 4Z09A 1BHTA 2J8JA 4Z0DA 4Z0EA 3ZLEA 4BVVA 2FD6A 3HMTA 1PK2A 2QJ2A 4YIVA 2Q8BA 2SPTA 4UAOA 2K51A 1GP9A 4BVDA 2HPPP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CIK A;  3U73 A;  1KIV A;  5HPG A;  1I71 A;  1YXE A;  1CEA A;  5CT1 A;  2K4R A;  3HN4 A;  5CT3 A;  1PK4 A;  1NL2 A;  5CP9 A;  4R19 A;  1HKY A;  3SRJ A;  5I25 A;  1A0H A;  1HPJ A;  3SRI A;  3BT1 A;  3SP8 A;  3E6P L;  1GMO A;  2FEB A;  2I9A A;  1Z40 A;  2J8L A;  4R1A A;  5EOK A;  4Z0F A;  1PML A;  5CS1 A;  2Z8W A;  4DUR A;  4A5T S;  2DOI A;  4BVW A;  5COE A;  2LL3 A;  1I5K A;  5CS9 A;  3MKP A;  2L0S A;  2PF2 A;  2YIP A;  1W8K A;  3NXP A;  4BV5 A;  2Q8A A;  1GMN A;  2YIL A;  4NZQ A;  2HGF A;  1URK A;  4R1C A;  4BV7 A;  4APL A;  3KIV A;  4BVC A;  5EOD A;  1KDU A;  2LL4 M;  5CT2 A;  2X2Z A;  4KIV A;  2Z8V A;  5CS5 A;  3ZWZ A;  2YIO A;  2K13 X;  1CEB A;  1PKR A;  2Y8R A;  1HPK A;  1JFN A;  2HPQ P;  2KNF A;  1PMK A;  4O03 A;  2F83 A;  1KRN A;  3HMS A;  3BT2 A;  2I9B A;  3LAQ A;  2PK4 A;  2KJ4 A;  4R1B A;  4D3C A;  4IUA A;  2DOH X;  3HMR A;  1I8N A;  1TPK A;  5CS3 A;  4HZH A;  1NK1 A;  1W81 A;  3K65 A;  4UV6 A;  4APM A;  1KI0 A;  2QJ4 A;  5CSQ A;  1NL1 A;  2PF1 A;  1B2I A;  4Z09 A;  1BHT A;  2J8J A;  4Z0D A;  4Z0E A;  3ZLE A;  4BVV A;  2FD6 A;  3HMT A;  1PK2 A;  2QJ2 A;  2Q8B A;  2SPT A;  4UAO A;  2K51 A;  1GP9 A;  4BVD A;  2HPP P; 
#chains in the Genus database with same CATH topology
 4CIK A;  3U73 A;  1KIV A;  5HPG A;  1I71 A;  1YXE A;  1CEA A;  5CT1 A;  2K4R A;  3HN4 A;  2KL5 A;  5CT3 A;  1PK4 A;  1NL2 A;  5CP9 A;  4R19 A;  1HKY A;  3SRJ A;  5I25 A;  1A0H A;  1HPJ A;  3SRI A;  3BT1 A;  3SP8 A;  3E6P L;  1GMO A;  2FEB A;  2I9A A;  1Z40 A;  2J8L A;  4R1A A;  5EOK A;  4Z0F A;  1PML A;  5CS1 A;  2Z8W A;  4DUR A;  4A5T S;  2DOI A;  4BVW A;  5COE A;  2LL3 A;  1I5K A;  5CS9 A;  3MKP A;  2L0S A;  2PF2 A;  2YIP A;  1W8K A;  3NXP A;  4BV5 A;  2Q8A A;  1GMN A;  2YIL A;  4NZQ A;  2HGF A;  1URK A;  4R1C A;  4BV7 A;  4APL A;  3KIV A;  4BVC A;  5EOD A;  4YIZ A;  1KDU A;  2LL4 M;  5CT2 A;  2X2Z A;  4KIV A;  2Z8V A;  5CS5 A;  3ZWZ A;  2YIO A;  2K13 X;  1CEB A;  1PKR A;  2Y8R A;  1HPK A;  1JFN A;  2HPQ P;  2KNF A;  1PMK A;  4O03 A;  2F83 A;  1KRN A;  3HMS A;  3BT2 A;  2I9B A;  3LAQ A;  2PK4 A;  2KJ4 A;  4R1B A;  4D3C A;  4IUA A;  2DOH X;  3HMR A;  1I8N A;  1TPK A;  5CS3 A;  4HZH A;  1NK1 A;  1W81 A;  3K65 A;  4UV6 A;  4APM A;  1KI0 A;  2QJ4 A;  5CSQ A;  1NL1 A;  2PF1 A;  1B2I A;  4Z09 A;  1BHT A;  2J8J A;  4Z0D A;  4Z0E A;  3ZLE A;  4BVV A;  2FD6 A;  3HMT A;  1PK2 A;  2QJ2 A;  4YIV A;  2Q8B A;  2SPT A;  4UAO A;  2K51 A;  1GP9 A;  4BVD A;  2HPP P; 
#chains in the Genus database with same CATH homology
 4CIK A;  3U73 A;  1KIV A;  5HPG A;  1I71 A;  1YXE A;  1CEA A;  5CT1 A;  2K4R A;  3HN4 A;  2KL5 A;  5CT3 A;  1PK4 A;  1NL2 A;  5CP9 A;  4R19 A;  1HKY A;  3SRJ A;  5I25 A;  1A0H A;  1HPJ A;  3SRI A;  3BT1 A;  3SP8 A;  3E6P L;  1GMO A;  2FEB A;  2I9A A;  1Z40 A;  2J8L A;  4R1A A;  5EOK A;  4Z0F A;  1PML A;  5CS1 A;  2Z8W A;  4DUR A;  4A5T S;  2DOI A;  4BVW A;  5COE A;  2LL3 A;  1I5K A;  5CS9 A;  3MKP A;  2L0S A;  2PF2 A;  2YIP A;  1W8K A;  3NXP A;  4BV5 A;  2Q8A A;  1GMN A;  2YIL A;  4NZQ A;  2HGF A;  1URK A;  4R1C A;  4BV7 A;  4APL A;  3KIV A;  4BVC A;  5EOD A;  4YIZ A;  1KDU A;  2LL4 M;  5CT2 A;  2X2Z A;  4KIV A;  2Z8V A;  5CS5 A;  3ZWZ A;  2YIO A;  2K13 X;  1CEB A;  1PKR A;  2Y8R A;  1HPK A;  1JFN A;  2HPQ P;  2KNF A;  1PMK A;  4O03 A;  2F83 A;  1KRN A;  3HMS A;  3BT2 A;  2I9B A;  3LAQ A;  2PK4 A;  2KJ4 A;  4R1B A;  4D3C A;  4IUA A;  2DOH X;  3HMR A;  1I8N A;  1TPK A;  5CS3 A;  4HZH A;  1NK1 A;  1W81 A;  3K65 A;  4UV6 A;  4APM A;  1KI0 A;  2QJ4 A;  5CSQ A;  1NL1 A;  2PF1 A;  1B2I A;  4Z09 A;  1BHT A;  2J8J A;  4Z0D A;  4Z0E A;  3ZLE A;  4BVV A;  2FD6 A;  3HMT A;  1PK2 A;  2QJ2 A;  4YIV A;  2Q8B A;  2SPT A;  4UAO A;  2K51 A;  1GP9 A;  4BVD A;  2HPP P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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