5CT1A

The structure of the nk1 fragment of hgf/sf complexed with ches
Total Genus 38
204060801001201401600510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
173
structure length
173
Chain Sequence
TIHEFKKSAKTTLIKIDPALKIKTKKVNTADQCANRCTRNKGLPFTCKAFVFDKARKQCLWFPFNSMSSGVKKEFGHEFDLYENKDYIRNCIIGKGRSYKGTVSITKSGIKCQPWSSMIPHEHSFLPSSYRGKDLQENYCRNPRGEEGGPWCFTSNPEVRYEVCDIPQCSEVE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (42-52)TII1 (77-80)TIV2 (52-55)TI1 (54-57)EMPTYAH1 (67-76)S4 (95-99)TIV3 (90-93)TI2 (91-94)TII3 (167-170)TI3 (102-105)S5 (108-121)3H3 (164-166)TVIb1 (155-158)TIV5 (151-154)3H2 (122-124)TII'1 (130-133)TIV4 (129-132)TVIII1 (156-159)O1 (171-173)S2 (60-63)TII2 (105-108)TI5 (133-136)3H1 (39-41)TI6 (143-146)S3 (86-90)Updating...
connected with : NaN
molecule tags Hormone
source organism Homo sapiens
publication title Exploring the chemical space of the lysine-binding pocket of the first kringle domain of hepatocyte growth factor/scatter factor (HGF/SF) yields a new class of inhibitors of HGF/SF-MET binding.
pubmed doi rcsb
molecule keywords Hepatocyte growth factor
total genus 38
structure length 173
sequence length 173
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00024 PAN_1 PAN domain
A PF00051 Kringle Kringle domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.20.10 Mainly Beta Beta Barrel Plasminogen Kringle 4 Plasminogen Kringle 4 5ct1A02
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 5ct1A01
3E6PL 5CT1A 2HPPP 4UV6A 1JFNA 3ZLEA 5CS1A 2FD6A 1KI0A 3LAQA 2LL4M 2KJ4A 2Y8RA 1CEAA 4BVCA 2PF2A 4Z09A 4CIKA 5CSQA 5I25A 1CEBA 4UAOA 2KNFA 5CS5A 3MKPA 5EOKA 4BVWA 2I9BA 1BHTA 4APMA 3SRJA 1HKYA 1B2IA 3HMTA 5CT2A 2K13X 1GMNA 1GMOA 2PK4A 2YILA 4DURA 1HPKA 2LL3A 3HN4A 3BT1A 1W81A 1NK1A 2DOHX 1Z40A 1PK2A 1I8NA 4KIVA 1HPJA 2J8LA 2YIPA 4R19A 1A0HA 2QJ4A 4BV7A 4R1AA 3U73A 1W8KA 5CT3A 4A5TS 4R1BA 1NL2A 4Z0DA 2YIOA 2Q8BA 4O03A 4R1CA 4Z0EA 3SP8A 1YXEA 4APLA 1KDUA 1I71A 2Q8AA 1NL1A 2Z8VA 2K51A 1URKA 3ZWZA 2DOIA 1PKRA 3NXPA 1PMKA 4NZQA 2J8JA 1PMLA 2HPQP 4D3CA 4BVDA 2F83A 4IUAA 2PF1A 1I5KA 5CS3A 3HMSA 2K4RA 1TPKA 2I9AA 3BT2A 4Z0FA 4HZHA 5EODA 3K65A 1PK4A 5CS9A 2SPTA 2Z8WA 3SRIA 3KIVA 4BVVA 2FEBA 1KRNA 1KIVA 2X2ZA 2HGFA 2L0SA 3HMRA 5CP9A 5HPGA 4BV5A 5COEA 1GP9A 2QJ2A
chains in the Genus database with same CATH superfamily
3E6PL 4YIZA 5CT1A 2HPPP 4UV6A 1JFNA 3ZLEA 5CS1A 2FD6A 1KI0A 3LAQA 2LL4M 2KJ4A 2Y8RA 1CEAA 4BVCA 2PF2A 4Z09A 4CIKA 5CSQA 5I25A 1CEBA 4UAOA 2KNFA 4YIVA 5CS5A 3MKPA 5EOKA 4BVWA 2I9BA 1BHTA 4APMA 3SRJA 1HKYA 1B2IA 3HMTA 5CT2A 2K13X 1GMNA 1GMOA 2PK4A 2YILA 4DURA 1HPKA 2LL3A 3HN4A 3BT1A 1W81A 1NK1A 2DOHX 1Z40A 1PK2A 1I8NA 4KIVA 1HPJA 2J8LA 2YIPA 4R19A 1A0HA 2QJ4A 4BV7A 4R1AA 3U73A 1W8KA 5CT3A 4A5TS 4R1BA 1NL2A 4Z0DA 2YIOA 2Q8BA 4O03A 4R1CA 4Z0EA 3SP8A 1YXEA 4APLA 1KDUA 1I71A 2Q8AA 1NL1A 2Z8VA 2K51A 1URKA 3ZWZA 2DOIA 1PKRA 3NXPA 1PMKA 2KL5A 4NZQA 2J8JA 1PMLA 2HPQP 4D3CA 4BVDA 2F83A 4IUAA 2PF1A 1I5KA 5CS3A 3HMSA 2K4RA 1TPKA 2I9AA 3BT2A 4Z0FA 4HZHA 5EODA 3K65A 1PK4A 5CS9A 2SPTA 2Z8WA 3SRIA 3KIVA 4BVVA 2FEBA 1KRNA 1KIVA 2X2ZA 2HGFA 2L0SA 3HMRA 5CP9A 5HPGA 4BV5A 5COEA 1GP9A 2QJ2A
chains in the Genus database with same CATH topology
3E6PL 4YIZA 5CT1A 2HPPP 4UV6A 1JFNA 3ZLEA 5CS1A 2FD6A 1KI0A 3LAQA 2LL4M 2KJ4A 2Y8RA 1CEAA 4BVCA 2PF2A 4Z09A 4CIKA 5CSQA 5I25A 1CEBA 4UAOA 2KNFA 4YIVA 5CS5A 3MKPA 5EOKA 4BVWA 2I9BA 1BHTA 4APMA 3SRJA 1HKYA 1B2IA 3HMTA 5CT2A 2K13X 1GMNA 1GMOA 2PK4A 2YILA 4DURA 1HPKA 2LL3A 3HN4A 3BT1A 1W81A 1NK1A 2DOHX 1Z40A 1PK2A 1I8NA 4KIVA 1HPJA 2J8LA 2YIPA 4R19A 1A0HA 2QJ4A 4BV7A 4R1AA 3U73A 1W8KA 5CT3A 4A5TS 4R1BA 1NL2A 4Z0DA 2YIOA 2Q8BA 4O03A 4R1CA 4Z0EA 3SP8A 1YXEA 4APLA 1KDUA 1I71A 2Q8AA 1NL1A 2Z8VA 2K51A 1URKA 3ZWZA 2DOIA 1PKRA 3NXPA 1PMKA 2KL5A 4NZQA 2J8JA 1PMLA 2HPQP 4D3CA 4BVDA 2F83A 4IUAA 2PF1A 1I5KA 5CS3A 3HMSA 2K4RA 1TPKA 2I9AA 3BT2A 4Z0FA 4HZHA 5EODA 3K65A 1PK4A 5CS9A 2SPTA 2Z8WA 3SRIA 3KIVA 4BVVA 2FEBA 1KRNA 1KIVA 2X2ZA 2HGFA 2L0SA 3HMRA 5CP9A 5HPGA 4BV5A 5COEA 1GP9A 2QJ2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E6P L;  5CT1 A;  2HPP P;  4UV6 A;  1JFN A;  3ZLE A;  5CS1 A;  2FD6 A;  1KI0 A;  3LAQ A;  2LL4 M;  2KJ4 A;  2Y8R A;  1CEA A;  4BVC A;  2PF2 A;  4Z09 A;  4CIK A;  5CSQ A;  5I25 A;  1CEB A;  4UAO A;  2KNF A;  5CS5 A;  3MKP A;  5EOK A;  4BVW A;  2I9B A;  1BHT A;  4APM A;  3SRJ A;  1HKY A;  1B2I A;  3HMT A;  5CT2 A;  2K13 X;  1GMN A;  1GMO A;  2PK4 A;  2YIL A;  4DUR A;  1HPK A;  2LL3 A;  3HN4 A;  3BT1 A;  1W81 A;  1NK1 A;  2DOH X;  1Z40 A;  1PK2 A;  1I8N A;  4KIV A;  1HPJ A;  2J8L A;  2YIP A;  4R19 A;  1A0H A;  2QJ4 A;  4BV7 A;  4R1A A;  3U73 A;  1W8K A;  5CT3 A;  4A5T S;  4R1B A;  1NL2 A;  4Z0D A;  2YIO A;  2Q8B A;  4O03 A;  4R1C A;  4Z0E A;  3SP8 A;  1YXE A;  4APL A;  1KDU A;  1I71 A;  2Q8A A;  1NL1 A;  2Z8V A;  2K51 A;  1URK A;  3ZWZ A;  2DOI A;  1PKR A;  3NXP A;  1PMK A;  4NZQ A;  2J8J A;  1PML A;  2HPQ P;  4D3C A;  4BVD A;  2F83 A;  4IUA A;  2PF1 A;  1I5K A;  5CS3 A;  3HMS A;  2K4R A;  1TPK A;  2I9A A;  3BT2 A;  4Z0F A;  4HZH A;  5EOD A;  3K65 A;  1PK4 A;  5CS9 A;  2SPT A;  2Z8W A;  3SRI A;  3KIV A;  4BVV A;  2FEB A;  1KRN A;  1KIV A;  2X2Z A;  2HGF A;  2L0S A;  3HMR A;  5CP9 A;  5HPG A;  4BV5 A;  5COE A;  1GP9 A;  2QJ2 A; 
#chains in the Genus database with same CATH topology
 3E6P L;  4YIZ A;  5CT1 A;  2HPP P;  4UV6 A;  1JFN A;  3ZLE A;  5CS1 A;  2FD6 A;  1KI0 A;  3LAQ A;  2LL4 M;  2KJ4 A;  2Y8R A;  1CEA A;  4BVC A;  2PF2 A;  4Z09 A;  4CIK A;  5CSQ A;  5I25 A;  1CEB A;  4UAO A;  2KNF A;  4YIV A;  5CS5 A;  3MKP A;  5EOK A;  4BVW A;  2I9B A;  1BHT A;  4APM A;  3SRJ A;  1HKY A;  1B2I A;  3HMT A;  5CT2 A;  2K13 X;  1GMN A;  1GMO A;  2PK4 A;  2YIL A;  4DUR A;  1HPK A;  2LL3 A;  3HN4 A;  3BT1 A;  1W81 A;  1NK1 A;  2DOH X;  1Z40 A;  1PK2 A;  1I8N A;  4KIV A;  1HPJ A;  2J8L A;  2YIP A;  4R19 A;  1A0H A;  2QJ4 A;  4BV7 A;  4R1A A;  3U73 A;  1W8K A;  5CT3 A;  4A5T S;  4R1B A;  1NL2 A;  4Z0D A;  2YIO A;  2Q8B A;  4O03 A;  4R1C A;  4Z0E A;  3SP8 A;  1YXE A;  4APL A;  1KDU A;  1I71 A;  2Q8A A;  1NL1 A;  2Z8V A;  2K51 A;  1URK A;  3ZWZ A;  2DOI A;  1PKR A;  3NXP A;  1PMK A;  2KL5 A;  4NZQ A;  2J8J A;  1PML A;  2HPQ P;  4D3C A;  4BVD A;  2F83 A;  4IUA A;  2PF1 A;  1I5K A;  5CS3 A;  3HMS A;  2K4R A;  1TPK A;  2I9A A;  3BT2 A;  4Z0F A;  4HZH A;  5EOD A;  3K65 A;  1PK4 A;  5CS9 A;  2SPT A;  2Z8W A;  3SRI A;  3KIV A;  4BVV A;  2FEB A;  1KRN A;  1KIV A;  2X2Z A;  2HGF A;  2L0S A;  3HMR A;  5CP9 A;  5HPG A;  4BV5 A;  5COE A;  1GP9 A;  2QJ2 A; 
#chains in the Genus database with same CATH homology
 3E6P L;  4YIZ A;  5CT1 A;  2HPP P;  4UV6 A;  1JFN A;  3ZLE A;  5CS1 A;  2FD6 A;  1KI0 A;  3LAQ A;  2LL4 M;  2KJ4 A;  2Y8R A;  1CEA A;  4BVC A;  2PF2 A;  4Z09 A;  4CIK A;  5CSQ A;  5I25 A;  1CEB A;  4UAO A;  2KNF A;  4YIV A;  5CS5 A;  3MKP A;  5EOK A;  4BVW A;  2I9B A;  1BHT A;  4APM A;  3SRJ A;  1HKY A;  1B2I A;  3HMT A;  5CT2 A;  2K13 X;  1GMN A;  1GMO A;  2PK4 A;  2YIL A;  4DUR A;  1HPK A;  2LL3 A;  3HN4 A;  3BT1 A;  1W81 A;  1NK1 A;  2DOH X;  1Z40 A;  1PK2 A;  1I8N A;  4KIV A;  1HPJ A;  2J8L A;  2YIP A;  4R19 A;  1A0H A;  2QJ4 A;  4BV7 A;  4R1A A;  3U73 A;  1W8K A;  5CT3 A;  4A5T S;  4R1B A;  1NL2 A;  4Z0D A;  2YIO A;  2Q8B A;  4O03 A;  4R1C A;  4Z0E A;  3SP8 A;  1YXE A;  4APL A;  1KDU A;  1I71 A;  2Q8A A;  1NL1 A;  2Z8V A;  2K51 A;  1URK A;  3ZWZ A;  2DOI A;  1PKR A;  3NXP A;  1PMK A;  2KL5 A;  4NZQ A;  2J8J A;  1PML A;  2HPQ P;  4D3C A;  4BVD A;  2F83 A;  4IUA A;  2PF1 A;  1I5K A;  5CS3 A;  3HMS A;  2K4R A;  1TPK A;  2I9A A;  3BT2 A;  4Z0F A;  4HZH A;  5EOD A;  3K65 A;  1PK4 A;  5CS9 A;  2SPT A;  2Z8W A;  3SRI A;  3KIV A;  4BVV A;  2FEB A;  1KRN A;  1KIV A;  2X2Z A;  2HGF A;  2L0S A;  3HMR A;  5CP9 A;  5HPG A;  4BV5 A;  5COE A;  1GP9 A;  2QJ2 A; 
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