1YI2H

Crystal structure of erythromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
Total Genus 39
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
171
structure length
160
Chain Sequence
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (6-8)S5 (96-100)EMPTYTI1 (19-22)O1 (84-86)S1 (35-37)TIV1 (36-39)AH1 (62-80)TIV2 (81-84)TI4 (42-45)S6 (122-130)S2 (48-54)TIV3 (114-117)S3 (58-61)AH2 (145-157)O3 (100-102)TII1 (131-134)TIV5 (142-145)TI5 (43-46)TIV4 (116-119)S4 (86-90)S7 (134-141)O2 (93-95)Updating...
connected with : NaN
molecule tags Ribosome
publication title Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance.
pubmed doi rcsb
molecule keywords 23S Ribosomal RNA
total genus 39
structure length 160
sequence length 171
ec nomenclature
pdb deposition date 2005-01-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1yi2H00
4WCEJ 1S72H 1VQMH 2ZJRJ 1VQ5H 1KC8J 3CC4H 1N8RJ 5MLCO 1KQSH 2ZJQJ 1YHQH 3CF5J 3I56H 5H1SO 1QVFH 5DM7J 1VQOH 5GADN 1Y69K 1VQ6H 1Q82J 2PA2A 3G71H 5JVGJ 1Q81J 3CCVH 3CCQH 1YI2H 4WFNJ 3CCMH 1K8AJ 1VQLH 1VQNH 1NJIJ 3G6EH 4U67J 3CMEH 3I55H 4WFAJ 5GAGN 5GAHN 5HL7J 1VQ4H 1K73J 3CCJH 1KD1J 3G4SH 3PIOJ 5AN9F 1K9MJ 2OTJH 5DM6J 3CC2H 3CMAH 5JVHJ 3DLLJ 1VQKH 1JJ2H 2ZJPJ 3CCLH 3OW2H 3CCRH 1WKIA 1VQ9H 4UY8M 4WFBJ 3CXCH 4IOCJ 1VQ8H 1VQ7H 1W2BH 1YJ9H 3PIPJ 1YITH 1M90J 4IO9J 1YJNH 5GAEN 1VQPH 1QVGH 3CD6H 2OTLH 1YIJH 3CC7H 1M1KJ 3CCEH 3CPWH 2QEXH 3J7ZM 2QA4H 3CCUH 1YJWH 4IOAJ 1Q86J 1Q7YJ 3CCSH 4WF9J
chains in the Genus database with same CATH superfamily
2I1OA 4WCEJ 2WK5A 1S72H 1VQMH 1OTPA 2ZJRJ 1VQ5H 1KC8J 3CC4H 1N8RJ 5MLCO 5AYYA 1KQSH 4US8A 1NVIE 4ZOHA 2ZJQJ 1YHQH 1VLBA 4C7YA 3CF5J 1UOUA 3PAJA 3I56H 1O4UA 5H1SO 4KWVA 2W54B 1DGJA 1QVFH 5DM7J 1VQOH 1JRPB 1JROB 5GADN 3NVYC 3WO0A 1X1OA 1SB3A 1Y69K 1VQ6H 1Q82J 3B9JC 3FAHA 2PA2A 3NRZC 3NVZC 1FMAE 3NVVC 4EAFA 3G71H 5EY3A 5JVGJ 1Q81J 3CCVH 1YTKA 1ZXIB 1QAPA 3BIIE 3C2FA 3CCQH 4GA6A 1AZYA 2W3SB 1YTDA 1YI2H 2B7NA 2J0FA 5AYZA 2B7QA 4WFNJ 5AYXA 4EADA 3CCMH 5MPOC 1K8AJ 1VQLH 1VQNH 1NJIJ 1SIJA 3G6EH 4U67J 3CMEH 3L0GA 3I55H 3RPFA 4WFAJ 3H5QA 5GAGN 5GAHN 5HL7J 3EUB4 1VQ4H 1K73J 3CCJH 5EP8A 1KD1J 3G4SH 1N62B 3WNZA 1RM6A 4C7ZA 3PIOJ 4X46A 5AN9F 2OMDA 2WK6A 1K9MJ 2QIEA 4GA5A 1FFVB 2OTJH 5DM6J 1V97A 3L4PA 3CC2H 2DSJA 3CMAH 5JVHJ 3DLLJ 4USAA 1N61B 4YEKA 1VQKH 3C2EA 2Q5WE 1QPQA 3TQVA 2ZJPJ 1JJ2H 3CCLH 1BRWA 4AP8A 3OW2H 3CCRH 1WKIA 1VQ9H 1FM0E 3WO1A 4UY8M 4I9AA 3AN1A 1QPNA 1N63B 1N5XA 5HULA 4WFBJ 3CXCH 1NVJA 4IOCJ 1VQ8H 1VQ7H 1WYGA 4C80A 1VDVA 1W2BH 1N5WB 4GA4A 3ETRC 5HUPA 1YTEA 3PIPJ 2I14A 1YJ9H 2B7PA 1YITH 3FC4A 1M90J 1FFUB 4KWWA 1QPOA 3C2VA 4IO9J 1FO4A 1YJNH 5GAEN 1VQPH 2JBMA 1QVGH 3CD6H 2OTLH 1N60B 1YIJH 3CC7H 3C2RA 2E3TA 3GNNA 3CCEH 3AM9A 1M1KJ 3CPWH 4XR5A 1QPRA 3C2OA 3VMMA 4LHMA 3J7ZM 2QEXH 2QA4H 2TPTA 3CCUH 1YJWH 3SR6C 2W3RB 4IOAJ 1Q86J 3NVWC 2WP4A 3CCSH 1Q7YJ 2W55B 4US9A 4YYYA 4WF9J 3AMZA 1FIQC 3NS1C 5HUOA
chains in the Genus database with same CATH topology
4WCEJ 1S72H 1VQMH 2ZJRJ 1VQ5H 1KC8J 3CC4H 1N8RJ 5MLCO 1KQSH 2ZJQJ 1YHQH 3CF5J 3I56H 5H1SO 1QVFH 5DM7J 1VQOH 5GADN 1Y69K 1VQ6H 1Q82J 2PA2A 3G71H 5JVGJ 1Q81J 3CCVH 3CCQH 1YI2H 4WFNJ 3CCMH 1K8AJ 1VQLH 1VQNH 1NJIJ 3G6EH 4U67J 3CMEH 3I55H 4WFAJ 5GAGN 5GAHN 5HL7J 1VQ4H 1K73J 3CCJH 1KD1J 3G4SH 3PIOJ 5AN9F 1K9MJ 2OTJH 5DM6J 3CC2H 3CMAH 5JVHJ 3DLLJ 1VQKH 1JJ2H 2ZJPJ 3CCLH 3OW2H 3CCRH 1WKIA 1VQ9H 4UY8M 4WFBJ 3CXCH 4IOCJ 1VQ8H 1VQ7H 1W2BH 1YJ9H 3PIPJ 1YITH 1M90J 4IO9J 1YJNH 5GAEN 1VQPH 1QVGH 3CD6H 2OTLH 1YIJH 3CC7H 1M1KJ 3CCEH 3CPWH 2QEXH 3J7ZM 2QA4H 3CCUH 1YJWH 4IOAJ 1Q86J 1Q7YJ 3CCSH 4WF9J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WCE J;  1S72 H;  1VQM H;  2ZJR J;  1VQ5 H;  1KC8 J;  3CC4 H;  1N8R J;  5MLC O;  1KQS H;  2ZJQ J;  1YHQ H;  3CF5 J;  3I56 H;  5H1S O;  1QVF H;  5DM7 J;  1VQO H;  5GAD N;  1Y69 K;  1VQ6 H;  1Q82 J;  2PA2 A;  3G71 H;  5JVG J;  1Q81 J;  3CCV H;  3CCQ H;  1YI2 H;  4WFN J;  3CCM H;  1K8A J;  1VQL H;  1VQN H;  1NJI J;  3G6E H;  4U67 J;  3CME H;  3I55 H;  4WFA J;  5GAG N;  5GAH N;  5HL7 J;  1VQ4 H;  1K73 J;  3CCJ H;  1KD1 J;  3G4S H;  3PIO J;  5AN9 F;  1K9M J;  2OTJ H;  5DM6 J;  3CC2 H;  3CMA H;  5JVH J;  3DLL J;  1VQK H;  1JJ2 H;  2ZJP J;  3CCL H;  3OW2 H;  3CCR H;  1WKI A;  1VQ9 H;  4UY8 M;  4WFB J;  3CXC H;  4IOC J;  1VQ8 H;  1VQ7 H;  1W2B H;  1YJ9 H;  3PIP J;  1YIT H;  1M90 J;  4IO9 J;  1YJN H;  5GAE N;  1VQP H;  1QVG H;  3CD6 H;  2OTL H;  1YIJ H;  3CC7 H;  1M1K J;  3CCE H;  3CPW H;  2QEX H;  3J7Z M;  2QA4 H;  3CCU H;  1YJW H;  4IOA J;  1Q86 J;  1Q7Y J;  3CCS H;  4WF9 J; 
#chains in the Genus database with same CATH topology
 2I1O A;  4WCE J;  2WK5 A;  1S72 H;  1VQM H;  1OTP A;  2ZJR J;  1VQ5 H;  1KC8 J;  3CC4 H;  1N8R J;  5MLC O;  5AYY A;  1KQS H;  4US8 A;  1NVI E;  4ZOH A;  2ZJQ J;  1YHQ H;  1VLB A;  4C7Y A;  3CF5 J;  1UOU A;  3PAJ A;  3I56 H;  1O4U A;  5H1S O;  4KWV A;  2W54 B;  1DGJ A;  1QVF H;  5DM7 J;  1VQO H;  1JRP B;  1JRO B;  5GAD N;  3NVY C;  3WO0 A;  1X1O A;  1SB3 A;  1Y69 K;  1VQ6 H;  1Q82 J;  3B9J C;  3FAH A;  2PA2 A;  3NRZ C;  3NVZ C;  1FMA E;  3NVV C;  4EAF A;  3G71 H;  5EY3 A;  5JVG J;  1Q81 J;  3CCV H;  1YTK A;  1ZXI B;  1QAP A;  3BII E;  3C2F A;  3CCQ H;  4GA6 A;  1AZY A;  2W3S B;  1YTD A;  1YI2 H;  2B7N A;  2J0F A;  5AYZ A;  2B7Q A;  4WFN J;  5AYX A;  4EAD A;  3CCM H;  5MPO C;  1K8A J;  1VQL H;  1VQN H;  1NJI J;  1SIJ A;  3G6E H;  4U67 J;  3CME H;  3L0G A;  3I55 H;  3RPF A;  4WFA J;  3H5Q A;  5GAG N;  5GAH N;  5HL7 J;  3EUB 4;  1VQ4 H;  1K73 J;  3CCJ H;  5EP8 A;  1KD1 J;  3G4S H;  1N62 B;  3WNZ A;  1RM6 A;  4C7Z A;  3PIO J;  4X46 A;  5AN9 F;  2OMD A;  2WK6 A;  1K9M J;  2QIE A;  4GA5 A;  1FFV B;  2OTJ H;  5DM6 J;  1V97 A;  3L4P A;  3CC2 H;  2DSJ A;  3CMA H;  5JVH J;  3DLL J;  4USA A;  1N61 B;  4YEK A;  1VQK H;  3C2E A;  2Q5W E;  1QPQ A;  3TQV A;  2ZJP J;  1JJ2 H;  3CCL H;  1BRW A;  4AP8 A;  3OW2 H;  3CCR H;  1WKI A;  1VQ9 H;  1FM0 E;  3WO1 A;  4UY8 M;  4I9A A;  3AN1 A;  1QPN A;  1N63 B;  1N5X A;  5HUL A;  4WFB J;  3CXC H;  1NVJ A;  4IOC J;  1VQ8 H;  1VQ7 H;  1WYG A;  4C80 A;  1VDV A;  1W2B H;  1N5W B;  4GA4 A;  3ETR C;  5HUP A;  1YTE A;  3PIP J;  2I14 A;  1YJ9 H;  2B7P A;  1YIT H;  3FC4 A;  1M90 J;  1FFU B;  4KWW A;  1QPO A;  3C2V A;  4IO9 J;  1FO4 A;  1YJN H;  5GAE N;  1VQP H;  2JBM A;  1QVG H;  3CD6 H;  2OTL H;  1N60 B;  1YIJ H;  3CC7 H;  3C2R A;  2E3T A;  3GNN A;  3CCE H;  3AM9 A;  1M1K J;  3CPW H;  4XR5 A;  1QPR A;  3C2O A;  3VMM A;  4LHM A;  3J7Z M;  2QEX H;  2QA4 H;  2TPT A;  3CCU H;  1YJW H;  3SR6 C;  2W3R B;  4IOA J;  1Q86 J;  3NVW C;  2WP4 A;  3CCS H;  1Q7Y J;  2W55 B;  4US9 A;  4YYY A;  4WF9 J;  3AMZ A;  1FIQ C;  3NS1 C;  5HUO A; 
#chains in the Genus database with same CATH homology
 4WCE J;  1S72 H;  1VQM H;  2ZJR J;  1VQ5 H;  1KC8 J;  3CC4 H;  1N8R J;  5MLC O;  1KQS H;  2ZJQ J;  1YHQ H;  3CF5 J;  3I56 H;  5H1S O;  1QVF H;  5DM7 J;  1VQO H;  5GAD N;  1Y69 K;  1VQ6 H;  1Q82 J;  2PA2 A;  3G71 H;  5JVG J;  1Q81 J;  3CCV H;  3CCQ H;  1YI2 H;  4WFN J;  3CCM H;  1K8A J;  1VQL H;  1VQN H;  1NJI J;  3G6E H;  4U67 J;  3CME H;  3I55 H;  4WFA J;  5GAG N;  5GAH N;  5HL7 J;  1VQ4 H;  1K73 J;  3CCJ H;  1KD1 J;  3G4S H;  3PIO J;  5AN9 F;  1K9M J;  2OTJ H;  5DM6 J;  3CC2 H;  3CMA H;  5JVH J;  3DLL J;  1VQK H;  1JJ2 H;  2ZJP J;  3CCL H;  3OW2 H;  3CCR H;  1WKI A;  1VQ9 H;  4UY8 M;  4WFB J;  3CXC H;  4IOC J;  1VQ8 H;  1VQ7 H;  1W2B H;  1YJ9 H;  3PIP J;  1YIT H;  1M90 J;  4IO9 J;  1YJN H;  5GAE N;  1VQP H;  1QVG H;  3CD6 H;  2OTL H;  1YIJ H;  3CC7 H;  1M1K J;  3CCE H;  3CPW H;  2QEX H;  3J7Z M;  2QA4 H;  3CCU H;  1YJW H;  4IOA J;  1Q86 J;  1Q7Y J;  3CCS H;  4WF9 J; 
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