1YIJH

Crystal structure of telithromycin bound to the g2099a mutant 50s ribosomal subunit of haloarcula marismortui
Total Genus 39
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
171
structure length
160
Chain Sequence
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
publication title Structures of MLSBK antibiotics bound to mutated large ribosomal subunits provide a structural explanation for resistance.
pubmed doi rcsb
molecule keywords 23S Ribosomal RNA
total genus 39
structure length 160
sequence length 171
ec nomenclature
pdb deposition date 2005-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1yijH00
4IOAJ 3CC4H 1VQLH 1KQSH 1VQ6H 3CCSH 1Q82J 1YIJH 5HL7J 3PIPJ 1VQ9H 1VQ5H 1NJIJ 1Y69K 1K8AJ 2ZJQJ 5GAEN 4WF9J 3CCUH 3CC2H 3I56H 3CCMH 3DLLJ 1S72H 5GADN 3CMEH 3CCEH 3CCRH 5GAGN 4U67J 1Q7YJ 1VQ7H 1K9MJ 2ZJRJ 4WFBJ 1W2BH 1YJWH 1WKIA 2PA2A 1Q81J 3CF5J 3CPWH 5MLCO 1N8RJ 1M90J 3CD6H 3G71H 1VQ4H 3CCLH 5JVGJ 2OTJH 1YHQH 3CCQH 2ZJPJ 3CCVH 3CC7H 1QVFH 3OW2H 3G6EH 1YJ9H 5H1SO 2QEXH 4IO9J 2QA4H 4IOCJ 3CMAH 3PIOJ 2OTLH 4WFNJ 1K73J 1Q86J 5DM7J 1VQOH 1YJNH 1VQPH 1VQ8H 1KC8J 3I55H 5GAHN 1YI2H 3CXCH 4WFAJ 3G4SH 1YITH 5JVHJ 5AN9F 5DM6J 1KD1J 1QVGH 1VQKH 3CCJH 4WCEJ 1VQMH 1M1KJ 1JJ2H 3J7ZM 1VQNH 4UY8M
chains in the Genus database with same CATH superfamily
4LHMA 4IOAJ 3AN1A 3CC4H 1VQLH 4US8A 1N63B 4C80A 2I1OA 1KQSH 1BRWA 3SR6C 1VQ6H 5MPOC 1N62B 5HULA 3CCSH 1Q82J 1YIJH 4YEKA 3L4PA 5HL7J 1QPQA 5HUPA 1SB3A 2E3TA 3WO0A 4AP8A 3PIPJ 1VQ9H 1N5XA 1NJIJ 1O4UA 2W3SB 3L0GA 1Y69K 1VQ5H 3RPFA 3NVZC 2B7NA 3NRZC 1K8AJ 1JROB 2I14A 4KWWA 2QIEA 2ZJQJ 1FIQC 5GAEN 1N61B 1QPRA 4WF9J 3CCUH 4C7YA 3CC2H 3C2RA 4XR5A 3C2EA 3EUB4 1FMAE 2B7PA 1RM6A 1UOUA 3I56H 3CCMH 3DLLJ 1DGJA 4I9AA 1S72H 5GADN 3CMEH 5HUOA 4YYYA 3C2OA 3CCEH 3CCRH 5GAGN 3C2VA 3PAJA 4U67J 1Q7YJ 2OMDA 1FM0E 3NVYC 1VQ7H 1K9MJ 2W55B 1WYGA 4EADA 2ZJRJ 1YTEA 4WFBJ 1V97A 1W2BH 3NVWC 1YJWH 1WKIA 1FFUB 3VMMA 2PA2A 1Q81J 2W54B 3CF5J 3ETRC 3CPWH 5MLCO 3GNNA 1N8RJ 3H5QA 1M90J 3CD6H 3FC4A 4US9A 3G71H 2B7QA 1VQ4H 3CCLH 5JVGJ 2OTJH 1YHQH 5AYZA 2DSJA 2WK5A 3CCQH 1YTKA 2ZJPJ 3CCVH 3CC7H 1NVJA 1VLBA 1QVFH 3OW2H 3G6EH 2WP4A 1YJ9H 2Q5WE 5H1SO 3AM9A 2QEXH 4IO9J 2QA4H 4IOCJ 5EP8A 3CMAH 4X46A 3FAHA 3PIOJ 1QPOA 2W3RB 4GA4A 4WFNJ 2OTLH 4USAA 1NVIE 1JRPB 3WO1A 3NVVC 4GA6A 1N5WB 1N60B 1K73J 1Q86J 1OTPA 4KWVA 2TPTA 5DM7J 1VQOH 5AYYA 3WNZA 3TQVA 1YJNH 1VQPH 3B9JC 1KC8J 2J0FA 2JBMA 3I55H 1VQ8H 5GAHN 5AYXA 1YI2H 1QPNA 3CXCH 4WFAJ 1AZYA 1SIJA 3AMZA 1FO4A 3G4SH 4GA5A 2WK6A 1YITH 3C2FA 5JVHJ 5AN9F 1X1OA 3NS1C 5DM6J 5EY3A 1KD1J 1QVGH 4ZOHA 4C7ZA 1VQKH 3CCJH 4WCEJ 3BIIE 1VQMH 1M1KJ 1JJ2H 3J7ZM 4EAFA 1ZXIB 1VQNH 1FFVB 1VDVA 4UY8M 1YTDA 1QAPA
chains in the Genus database with same CATH topology
4IOAJ 3CC4H 1VQLH 1KQSH 1VQ6H 3CCSH 1Q82J 1YIJH 5HL7J 3PIPJ 1VQ9H 1VQ5H 1NJIJ 1Y69K 1K8AJ 2ZJQJ 5GAEN 4WF9J 3CCUH 3CC2H 3I56H 3CCMH 3DLLJ 1S72H 5GADN 3CMEH 3CCEH 3CCRH 5GAGN 4U67J 1Q7YJ 1VQ7H 1K9MJ 2ZJRJ 4WFBJ 1W2BH 1YJWH 1WKIA 2PA2A 1Q81J 3CF5J 3CPWH 5MLCO 1N8RJ 1M90J 3CD6H 3G71H 1VQ4H 3CCLH 5JVGJ 2OTJH 1YHQH 3CCQH 2ZJPJ 3CCVH 3CC7H 1QVFH 3OW2H 3G6EH 1YJ9H 5H1SO 2QEXH 4IO9J 2QA4H 4IOCJ 3CMAH 3PIOJ 2OTLH 4WFNJ 1K73J 1Q86J 5DM7J 1VQOH 1YJNH 1VQPH 1VQ8H 1KC8J 3I55H 5GAHN 1YI2H 3CXCH 4WFAJ 3G4SH 1YITH 5JVHJ 5AN9F 5DM6J 1KD1J 1QVGH 1VQKH 3CCJH 4WCEJ 1VQMH 1M1KJ 1JJ2H 3J7ZM 1VQNH 4UY8M
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IOA J;  3CC4 H;  1VQL H;  1KQS H;  1VQ6 H;  3CCS H;  1Q82 J;  1YIJ H;  5HL7 J;  3PIP J;  1VQ9 H;  1VQ5 H;  1NJI J;  1Y69 K;  1K8A J;  2ZJQ J;  5GAE N;  4WF9 J;  3CCU H;  3CC2 H;  3I56 H;  3CCM H;  3DLL J;  1S72 H;  5GAD N;  3CME H;  3CCE H;  3CCR H;  5GAG N;  4U67 J;  1Q7Y J;  1VQ7 H;  1K9M J;  2ZJR J;  4WFB J;  1W2B H;  1YJW H;  1WKI A;  2PA2 A;  1Q81 J;  3CF5 J;  3CPW H;  5MLC O;  1N8R J;  1M90 J;  3CD6 H;  3G71 H;  1VQ4 H;  3CCL H;  5JVG J;  2OTJ H;  1YHQ H;  3CCQ H;  2ZJP J;  3CCV H;  3CC7 H;  1QVF H;  3OW2 H;  3G6E H;  1YJ9 H;  5H1S O;  2QEX H;  4IO9 J;  2QA4 H;  4IOC J;  3CMA H;  3PIO J;  2OTL H;  4WFN J;  1K73 J;  1Q86 J;  5DM7 J;  1VQO H;  1YJN H;  1VQP H;  1VQ8 H;  1KC8 J;  3I55 H;  5GAH N;  1YI2 H;  3CXC H;  4WFA J;  3G4S H;  1YIT H;  5JVH J;  5AN9 F;  5DM6 J;  1KD1 J;  1QVG H;  1VQK H;  3CCJ H;  4WCE J;  1VQM H;  1M1K J;  1JJ2 H;  3J7Z M;  1VQN H;  4UY8 M; 
#chains in the Genus database with same CATH topology
 4LHM A;  4IOA J;  3AN1 A;  3CC4 H;  1VQL H;  4US8 A;  1N63 B;  4C80 A;  2I1O A;  1KQS H;  1BRW A;  3SR6 C;  1VQ6 H;  5MPO C;  1N62 B;  5HUL A;  3CCS H;  1Q82 J;  1YIJ H;  4YEK A;  3L4P A;  5HL7 J;  1QPQ A;  5HUP A;  1SB3 A;  2E3T A;  3WO0 A;  4AP8 A;  3PIP J;  1VQ9 H;  1N5X A;  1NJI J;  1O4U A;  2W3S B;  3L0G A;  1Y69 K;  1VQ5 H;  3RPF A;  3NVZ C;  2B7N A;  3NRZ C;  1K8A J;  1JRO B;  2I14 A;  4KWW A;  2QIE A;  2ZJQ J;  1FIQ C;  5GAE N;  1N61 B;  1QPR A;  4WF9 J;  3CCU H;  4C7Y A;  3CC2 H;  3C2R A;  4XR5 A;  3C2E A;  3EUB 4;  1FMA E;  2B7P A;  1RM6 A;  1UOU A;  3I56 H;  3CCM H;  3DLL J;  1DGJ A;  4I9A A;  1S72 H;  5GAD N;  3CME H;  5HUO A;  4YYY A;  3C2O A;  3CCE H;  3CCR H;  5GAG N;  3C2V A;  3PAJ A;  4U67 J;  1Q7Y J;  2OMD A;  1FM0 E;  3NVY C;  1VQ7 H;  1K9M J;  2W55 B;  1WYG A;  4EAD A;  2ZJR J;  1YTE A;  4WFB J;  1V97 A;  1W2B H;  3NVW C;  1YJW H;  1WKI A;  1FFU B;  3VMM A;  2PA2 A;  1Q81 J;  2W54 B;  3CF5 J;  3ETR C;  3CPW H;  5MLC O;  3GNN A;  1N8R J;  3H5Q A;  1M90 J;  3CD6 H;  3FC4 A;  4US9 A;  3G71 H;  2B7Q A;  1VQ4 H;  3CCL H;  5JVG J;  2OTJ H;  1YHQ H;  5AYZ A;  2DSJ A;  2WK5 A;  3CCQ H;  1YTK A;  2ZJP J;  3CCV H;  3CC7 H;  1NVJ A;  1VLB A;  1QVF H;  3OW2 H;  3G6E H;  2WP4 A;  1YJ9 H;  2Q5W E;  5H1S O;  3AM9 A;  2QEX H;  4IO9 J;  2QA4 H;  4IOC J;  5EP8 A;  3CMA H;  4X46 A;  3FAH A;  3PIO J;  1QPO A;  2W3R B;  4GA4 A;  4WFN J;  2OTL H;  4USA A;  1NVI E;  1JRP B;  3WO1 A;  3NVV C;  4GA6 A;  1N5W B;  1N60 B;  1K73 J;  1Q86 J;  1OTP A;  4KWV A;  2TPT A;  5DM7 J;  1VQO H;  5AYY A;  3WNZ A;  3TQV A;  1YJN H;  1VQP H;  3B9J C;  1KC8 J;  2J0F A;  2JBM A;  3I55 H;  1VQ8 H;  5GAH N;  5AYX A;  1YI2 H;  1QPN A;  3CXC H;  4WFA J;  1AZY A;  1SIJ A;  3AMZ A;  1FO4 A;  3G4S H;  4GA5 A;  2WK6 A;  1YIT H;  3C2F A;  5JVH J;  5AN9 F;  1X1O A;  3NS1 C;  5DM6 J;  5EY3 A;  1KD1 J;  1QVG H;  4ZOH A;  4C7Z A;  1VQK H;  3CCJ H;  4WCE J;  3BII E;  1VQM H;  1M1K J;  1JJ2 H;  3J7Z M;  4EAF A;  1ZXI B;  1VQN H;  1FFV B;  1VDV A;  4UY8 M;  1YTD A;  1QAP A; 
#chains in the Genus database with same CATH homology
 4IOA J;  3CC4 H;  1VQL H;  1KQS H;  1VQ6 H;  3CCS H;  1Q82 J;  1YIJ H;  5HL7 J;  3PIP J;  1VQ9 H;  1VQ5 H;  1NJI J;  1Y69 K;  1K8A J;  2ZJQ J;  5GAE N;  4WF9 J;  3CCU H;  3CC2 H;  3I56 H;  3CCM H;  3DLL J;  1S72 H;  5GAD N;  3CME H;  3CCE H;  3CCR H;  5GAG N;  4U67 J;  1Q7Y J;  1VQ7 H;  1K9M J;  2ZJR J;  4WFB J;  1W2B H;  1YJW H;  1WKI A;  2PA2 A;  1Q81 J;  3CF5 J;  3CPW H;  5MLC O;  1N8R J;  1M90 J;  3CD6 H;  3G71 H;  1VQ4 H;  3CCL H;  5JVG J;  2OTJ H;  1YHQ H;  3CCQ H;  2ZJP J;  3CCV H;  3CC7 H;  1QVF H;  3OW2 H;  3G6E H;  1YJ9 H;  5H1S O;  2QEX H;  4IO9 J;  2QA4 H;  4IOC J;  3CMA H;  3PIO J;  2OTL H;  4WFN J;  1K73 J;  1Q86 J;  5DM7 J;  1VQO H;  1YJN H;  1VQP H;  1VQ8 H;  1KC8 J;  3I55 H;  5GAH N;  1YI2 H;  3CXC H;  4WFA J;  3G4S H;  1YIT H;  5JVH J;  5AN9 F;  5DM6 J;  1KD1 J;  1QVG H;  1VQK H;  3CCJ H;  4WCE J;  1VQM H;  1M1K J;  1JJ2 H;  3J7Z M;  1VQN H;  4UY8 M; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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