2PA2A

Crystal structure of human ribosomal protein l10 core domain
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
137
structure length
108
Chain Sequence
KAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosomal protein
molecule keywords 60S ribosomal protein L10
publication title Crystal Structure of Human Ribosomal Protein L10 Core Domain Reveals Eukaryote-Specific Motifs in Addition to the Conserved Fold
pubmed doi rcsb
source organism Homo sapiens
total genus 28
structure length 108
sequence length 137
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-03-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 2pa2A00
1WKIA 5GADN 2OTJH 4IOCJ 1KC8J 2ZJPJ 1YITH 1Q7YJ 2ZJRJ 4UY8M 1Q81J 5H1SO 1VQ7H 1VQOH 3I56H 3CCMH 1QVFH 3CPWH 3CCEH 3CC4H 5GAGN 5HL7J 1M90J 1VQ6H 1VQ4H 3CCSH 1YHQH 1M1KJ 4WFNJ 3CF5J 3G4SH 1VQLH 1YJ9H 3I55H 1K9MJ 2OTLH 5GAHN 5JVHJ 1NJIJ 1Q82J 3OW2H 3CCRH 1VQ5H 4WFAJ 1Y69K 5MLCO 4IO9J 5DM7J 1VQPH 1W2BH 1JJ2H 3CMEH 1VQMH 4IOAJ 3J7ZM 3CXCH 4WFBJ 3CC2H 3CCJH 3G71H 4U67J 3CCUH 3CC7H 3DLLJ 1K8AJ 5GAEN 4WCEJ 2QEXH 1YJWH 1Q86J 3CMAH 1KD1J 5DM6J 2PA2A 4WF9J 1YJNH 1KQSH 5JVGJ 3CCQH 1VQ9H 5AN9F 1VQKH 1VQ8H 3CCVH 1K73J 1QVGH 1VQNH 1YI2H 2QA4H 1N8RJ 3CD6H 1S72H 3G6EH 2ZJQJ 3PIPJ 1YIJH 3PIOJ 3CCLH
chains in the Genus database with same CATH superfamily
3NVVC 2TPTA 1SIJA 1VLBA 1VDVA 1NVIE 1BRWA 4LHMA 3AMZA 3SR6C 1WKIA 5GADN 2OTJH 4IOCJ 1KC8J 4US8A 3BIIE 5AYZA 2ZJPJ 2B7PA 1YITH 2WK5A 3B9JC 2W3RB 1Q7YJ 2ZJRJ 4UY8M 1Q81J 1RM6A 1V97A 1DGJA 5H1SO 1QPRA 5AYYA 3WO0A 3CCLH 1QAPA 1VQ7H 5HUPA 1VQOH 3I56H 4YEKA 3CCMH 1YTDA 1N60B 1FM0E 3C2VA 4YYYA 1QVFH 1FFUB 5EP8A 1SB3A 3CPWH 3CCEH 5HUOA 3CC4H 3FAHA 5GAGN 3H5QA 2Q5WE 4GA6A 3L4PA 5HL7J 3ETRC 3C2EA 5MPOC 1M90J 1VQ6H 1YTKA 1WYGA 1VQ4H 3CCSH 1YHQH 1M1KJ 3PAJA 5EY3A 4WFNJ 3CF5J 3G4SH 1VQLH 1YJ9H 5HULA 3I55H 1K9MJ 3WO1A 2OTLH 5GAHN 5JVHJ 1NJIJ 1Q82J 2JBMA 3OW2H 4AP8A 3NRZC 3NVZC 3CCRH 1N63B 2I1OA 3AM9A 3L0GA 4GA5A 2J0FA 4WFAJ 1VQ5H 1Y69K 1JRPB 5MLCO 5DM7J 4IO9J 1VQPH 4KWVA 4USAA 2W55B 1W2BH 2WK6A 3EUB4 1JJ2H 3CMEH 2B7QA 1VQMH 4IOAJ 3AN1A 2E3TA 5AYXA 2QIEA 3J7ZM 3CXCH 3C2OA 4WFBJ 3CC2H 4ZOHA 3CCJH 2DSJA 3G71H 4U67J 4EAFA 3CCUH 2I14A 3CC7H 3DLLJ 1N5WB 1K8AJ 2WP4A 1N61B 1FMAE 5GAEN 1N5XA 1QPNA 4EADA 4WCEJ 2QEXH 1YJWH 1Q86J 1AZYA 1X1OA 3FC4A 1NVJA 3CMAH 1KD1J 5DM6J 4US9A 2PA2A 3NVWC 4X46A 1QPOA 1ZXIB 4WF9J 2OMDA 3NS1C 1YJNH 1KQSH 4C80A 1QPQA 5JVGJ 4GA4A 3CCQH 1VQ9H 3NVYC 4XR5A 1YTEA 2W3SB 5AN9F 3PIOJ 1UOUA 1VQKH 1FFVB 3RPFA 4C7YA 3VMMA 1VQ8H 3CCVH 2B7NA 4I9AA 1K73J 1QVGH 1VQNH 1YI2H 2QA4H 3TQVA 1FO4A 1N62B 1N8RJ 1JROB 2W54B 3CD6H 3C2FA 3WNZA 1OTPA 4KWWA 1O4UA 3C2RA 4C7ZA 1S72H 3G6EH 2ZJQJ 3PIPJ 1YIJH 3GNNA 1FIQC
chains in the Genus database with same CATH topology
1WKIA 5GADN 2OTJH 4IOCJ 1KC8J 2ZJPJ 1YITH 1Q7YJ 2ZJRJ 4UY8M 1Q81J 5H1SO 1VQ7H 1VQOH 3I56H 3CCMH 1QVFH 3CPWH 3CCEH 3CC4H 5GAGN 5HL7J 1M90J 1VQ6H 1VQ4H 3CCSH 1YHQH 1M1KJ 4WFNJ 3CF5J 3G4SH 1VQLH 1YJ9H 3I55H 1K9MJ 2OTLH 5GAHN 5JVHJ 1NJIJ 1Q82J 3OW2H 3CCRH 1VQ5H 4WFAJ 1Y69K 5MLCO 4IO9J 5DM7J 1VQPH 1W2BH 1JJ2H 3CMEH 1VQMH 4IOAJ 3J7ZM 3CXCH 4WFBJ 3CC2H 3CCJH 3G71H 4U67J 3CCUH 3CC7H 3DLLJ 1K8AJ 5GAEN 4WCEJ 2QEXH 1YJWH 1Q86J 3CMAH 1KD1J 5DM6J 2PA2A 4WF9J 1YJNH 1KQSH 5JVGJ 3CCQH 1VQ9H 5AN9F 1VQKH 1VQ8H 3CCVH 1K73J 1QVGH 1VQNH 1YI2H 2QA4H 1N8RJ 3CD6H 1S72H 3G6EH 2ZJQJ 3PIPJ 1YIJH 3PIOJ 3CCLH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WKI A;  5GAD N;  2OTJ H;  4IOC J;  1KC8 J;  2ZJP J;  1YIT H;  1Q7Y J;  2ZJR J;  4UY8 M;  1Q81 J;  5H1S O;  1VQ7 H;  1VQO H;  3I56 H;  3CCM H;  1QVF H;  3CPW H;  3CCE H;  3CC4 H;  5GAG N;  5HL7 J;  1M90 J;  1VQ6 H;  1VQ4 H;  3CCS H;  1YHQ H;  1M1K J;  4WFN J;  3CF5 J;  3G4S H;  1VQL H;  1YJ9 H;  3I55 H;  1K9M J;  2OTL H;  5GAH N;  5JVH J;  1NJI J;  1Q82 J;  3OW2 H;  3CCR H;  1VQ5 H;  4WFA J;  1Y69 K;  5MLC O;  4IO9 J;  5DM7 J;  1VQP H;  1W2B H;  1JJ2 H;  3CME H;  1VQM H;  4IOA J;  3J7Z M;  3CXC H;  4WFB J;  3CC2 H;  3CCJ H;  3G71 H;  4U67 J;  3CCU H;  3CC7 H;  3DLL J;  1K8A J;  5GAE N;  4WCE J;  2QEX H;  1YJW H;  1Q86 J;  3CMA H;  1KD1 J;  5DM6 J;  2PA2 A;  4WF9 J;  1YJN H;  1KQS H;  5JVG J;  3CCQ H;  1VQ9 H;  5AN9 F;  1VQK H;  1VQ8 H;  3CCV H;  1K73 J;  1QVG H;  1VQN H;  1YI2 H;  2QA4 H;  1N8R J;  3CD6 H;  1S72 H;  3G6E H;  2ZJQ J;  3PIP J;  1YIJ H;  3PIO J;  3CCL H; 
#chains in the Genus database with same CATH topology
 3NVV C;  2TPT A;  1SIJ A;  1VLB A;  1VDV A;  1NVI E;  1BRW A;  4LHM A;  3AMZ A;  3SR6 C;  1WKI A;  5GAD N;  2OTJ H;  4IOC J;  1KC8 J;  4US8 A;  3BII E;  5AYZ A;  2ZJP J;  2B7P A;  1YIT H;  2WK5 A;  3B9J C;  2W3R B;  1Q7Y J;  2ZJR J;  4UY8 M;  1Q81 J;  1RM6 A;  1V97 A;  1DGJ A;  5H1S O;  1QPR A;  5AYY A;  3WO0 A;  3CCL H;  1QAP A;  1VQ7 H;  5HUP A;  1VQO H;  3I56 H;  4YEK A;  3CCM H;  1YTD A;  1N60 B;  1FM0 E;  3C2V A;  4YYY A;  1QVF H;  1FFU B;  5EP8 A;  1SB3 A;  3CPW H;  3CCE H;  5HUO A;  3CC4 H;  3FAH A;  5GAG N;  3H5Q A;  2Q5W E;  4GA6 A;  3L4P A;  5HL7 J;  3ETR C;  3C2E A;  5MPO C;  1M90 J;  1VQ6 H;  1YTK A;  1WYG A;  1VQ4 H;  3CCS H;  1YHQ H;  1M1K J;  3PAJ A;  5EY3 A;  4WFN J;  3CF5 J;  3G4S H;  1VQL H;  1YJ9 H;  5HUL A;  3I55 H;  1K9M J;  3WO1 A;  2OTL H;  5GAH N;  5JVH J;  1NJI J;  1Q82 J;  2JBM A;  3OW2 H;  4AP8 A;  3NRZ C;  3NVZ C;  3CCR H;  1N63 B;  2I1O A;  3AM9 A;  3L0G A;  4GA5 A;  2J0F A;  4WFA J;  1VQ5 H;  1Y69 K;  1JRP B;  5MLC O;  5DM7 J;  4IO9 J;  1VQP H;  4KWV A;  4USA A;  2W55 B;  1W2B H;  2WK6 A;  3EUB 4;  1JJ2 H;  3CME H;  2B7Q A;  1VQM H;  4IOA J;  3AN1 A;  2E3T A;  5AYX A;  2QIE A;  3J7Z M;  3CXC H;  3C2O A;  4WFB J;  3CC2 H;  4ZOH A;  3CCJ H;  2DSJ A;  3G71 H;  4U67 J;  4EAF A;  3CCU H;  2I14 A;  3CC7 H;  3DLL J;  1N5W B;  1K8A J;  2WP4 A;  1N61 B;  1FMA E;  5GAE N;  1N5X A;  1QPN A;  4EAD A;  4WCE J;  2QEX H;  1YJW H;  1Q86 J;  1AZY A;  1X1O A;  3FC4 A;  1NVJ A;  3CMA H;  1KD1 J;  5DM6 J;  4US9 A;  2PA2 A;  3NVW C;  4X46 A;  1QPO A;  1ZXI B;  4WF9 J;  2OMD A;  3NS1 C;  1YJN H;  1KQS H;  4C80 A;  1QPQ A;  5JVG J;  4GA4 A;  3CCQ H;  1VQ9 H;  3NVY C;  4XR5 A;  1YTE A;  2W3S B;  5AN9 F;  3PIO J;  1UOU A;  1VQK H;  1FFV B;  3RPF A;  4C7Y A;  3VMM A;  1VQ8 H;  3CCV H;  2B7N A;  4I9A A;  1K73 J;  1QVG H;  1VQN H;  1YI2 H;  2QA4 H;  3TQV A;  1FO4 A;  1N62 B;  1N8R J;  1JRO B;  2W54 B;  3CD6 H;  3C2F A;  3WNZ A;  1OTP A;  4KWW A;  1O4U A;  3C2R A;  4C7Z A;  1S72 H;  3G6E H;  2ZJQ J;  3PIP J;  1YIJ H;  3GNN A;  1FIQ C; 
#chains in the Genus database with same CATH homology
 1WKI A;  5GAD N;  2OTJ H;  4IOC J;  1KC8 J;  2ZJP J;  1YIT H;  1Q7Y J;  2ZJR J;  4UY8 M;  1Q81 J;  5H1S O;  1VQ7 H;  1VQO H;  3I56 H;  3CCM H;  1QVF H;  3CPW H;  3CCE H;  3CC4 H;  5GAG N;  5HL7 J;  1M90 J;  1VQ6 H;  1VQ4 H;  3CCS H;  1YHQ H;  1M1K J;  4WFN J;  3CF5 J;  3G4S H;  1VQL H;  1YJ9 H;  3I55 H;  1K9M J;  2OTL H;  5GAH N;  5JVH J;  1NJI J;  1Q82 J;  3OW2 H;  3CCR H;  1VQ5 H;  4WFA J;  1Y69 K;  5MLC O;  4IO9 J;  5DM7 J;  1VQP H;  1W2B H;  1JJ2 H;  3CME H;  1VQM H;  4IOA J;  3J7Z M;  3CXC H;  4WFB J;  3CC2 H;  3CCJ H;  3G71 H;  4U67 J;  3CCU H;  3CC7 H;  3DLL J;  1K8A J;  5GAE N;  4WCE J;  2QEX H;  1YJW H;  1Q86 J;  3CMA H;  1KD1 J;  5DM6 J;  2PA2 A;  4WF9 J;  1YJN H;  1KQS H;  5JVG J;  3CCQ H;  1VQ9 H;  5AN9 F;  1VQK H;  1VQ8 H;  3CCV H;  1K73 J;  1QVG H;  1VQN H;  1YI2 H;  2QA4 H;  1N8R J;  3CD6 H;  1S72 H;  3G6E H;  2ZJQ J;  3PIP J;  1YIJ H;  3PIO J;  3CCL H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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