2Q5WE

The x-ray crystal structure of molybdopterin synthase from staphylococcus aureus
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
137
structure length
137
Chain Sequence
HMKQFEIVIEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Staphylococcus aureus
publication title Crystal structure of a molybdopterin synthase-precursor Z complex: insight into its sulfur transfer mechanism and its role in molybdenum cofactor deficiency.
pubmed doi rcsb
molecule keywords Molybdopterin-converting factor subunit 2
total genus 38
structure length 137
sequence length 137
ec nomenclature ec 2.8.1.12: Molybdopterin synthase.
pdb deposition date 2007-06-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02391 MoaE MoaE protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.40 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Molybdopterin biosynthesis MoaE subunit 2q5wE00
1NVJA 4AP8A 5MPOC 1FM0E 1FMAE 2OMDA 2QIEA 2WP4A 2Q5WE 3RPFA 1NVIE 3BIIE
chains in the Genus database with same CATH superfamily
2B7QA 4IO9J 3CMEH 1YITH 2OMDA 4KWVA 2OTJH 1KD1J 3CC2H 1N5XA 5DM6J 1SIJA 3G6EH 3CCRH 4WFBJ 1YIJH 3L0GA 1VQ7H 4GA4A 2I1OA 4UY8M 3NVYC 2J0FA 4C80A 3EUB4 5HULA 1N63B 2QIEA 4XR5A 3OW2H 5GAEN 1K8AJ 2B7NA 2W54B 4WCEJ 1JRPB 1N8RJ 1VQ9H 1VQ5H 1QVFH 1VLBA 1ZXIB 3CCMH 2B7PA 1FIQC 2ZJRJ 4YEKA 1VQKH 3CD6H 1FO4A 1QPOA 2WK5A 3CXCH 2PA2A 1VQPH 3CC7H 3WO1A 1QPQA 5GADN 5H1SO 1YHQH 3CCJH 2ZJQJ 4KWWA 4X46A 3CCSH 1OTPA 1N60B 3CMAH 2QA4H 1Q82J 1M90J 3AM9A 3C2FA 1QPRA 1UOUA 1YJ9H 1JJ2H 1VQ8H 4IOAJ 2OTLH 1FFUB 2E3TA 1Y69K 1VQLH 4YYYA 3TQVA 1YJNH 5HUPA 4WFAJ 3WO0A 3PIOJ 1Q86J 2QEXH 1FMAE 3NVZC 5HUOA 4WF9J 1BRWA 1X1OA 3C2RA 2WK6A 1SB3A 5GAGN 1RM6A 3SR6C 5EY3A 1K9MJ 1VQNH 3CCVH 1VQ6H 1QVGH 3RPFA 4USAA 4U67J 2TPTA 1FFVB 5MLCO 2ZJPJ 3CF5J 1Q81J 1WKIA 1KQSH 4I9AA 1NJIJ 1YTDA 3CCQH 1NVIE 3I55H 1WYGA 3FC4A 4IOCJ 1N61B 3C2OA 4C7YA 3CCEH 3VMMA 3CCUH 3ETRC 3G4SH 4LHMA 4US9A 2W55B 3NS1C 3FAHA 5MPOC 1AZYA 3PIPJ 3DLLJ 2I14A 3I56H 3G71H 1YI2H 1M1KJ 3BIIE 4EADA 1S72H 5DM7J 1VQMH 3CPWH 3PAJA 3C2VA 4ZOHA 5AYYA 2W3RB 5AYZA 1YJWH 1Q7YJ 1QAPA 4C7ZA 5GAHN 1JROB 1VQOH 3L4PA 2WP4A 1O4UA 4WFNJ 1DGJA 1QPNA 4GA5A 3NRZC 3WNZA 4AP8A 1VDVA 3AMZA 3B9JC 4US8A 5AYXA 3CCLH 1FM0E 1N62B 3AN1A 2Q5WE 1YTKA 3C2EA 3J7ZM 3NVWC 1YTEA 1KC8J 2W3SB 1W2BH 1NVJA 2JBMA 5AN9F 5JVGJ 1V97A 5JVHJ 5HL7J 3NVVC 5EP8A 1VQ4H 1N5WB 4EAFA 3CC4H 3H5QA 3GNNA 2DSJA 4GA6A 1K73J
chains in the Genus database with same CATH topology
1NVJA 4AP8A 5MPOC 1FM0E 1FMAE 2OMDA 2QIEA 2WP4A 2Q5WE 3RPFA 1NVIE 3BIIE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NVJ A;  4AP8 A;  5MPO C;  1FM0 E;  1FMA E;  2OMD A;  2QIE A;  2WP4 A;  2Q5W E;  3RPF A;  1NVI E;  3BII E; 
#chains in the Genus database with same CATH topology
 2B7Q A;  4IO9 J;  3CME H;  1YIT H;  2OMD A;  4KWV A;  2OTJ H;  1KD1 J;  3CC2 H;  1N5X A;  5DM6 J;  1SIJ A;  3G6E H;  3CCR H;  4WFB J;  1YIJ H;  3L0G A;  1VQ7 H;  4GA4 A;  2I1O A;  4UY8 M;  3NVY C;  2J0F A;  4C80 A;  3EUB 4;  5HUL A;  1N63 B;  2QIE A;  4XR5 A;  3OW2 H;  5GAE N;  1K8A J;  2B7N A;  2W54 B;  4WCE J;  1JRP B;  1N8R J;  1VQ9 H;  1VQ5 H;  1QVF H;  1VLB A;  1ZXI B;  3CCM H;  2B7P A;  1FIQ C;  2ZJR J;  4YEK A;  1VQK H;  3CD6 H;  1FO4 A;  1QPO A;  2WK5 A;  3CXC H;  2PA2 A;  1VQP H;  3CC7 H;  3WO1 A;  1QPQ A;  5GAD N;  5H1S O;  1YHQ H;  3CCJ H;  2ZJQ J;  4KWW A;  4X46 A;  3CCS H;  1OTP A;  1N60 B;  3CMA H;  2QA4 H;  1Q82 J;  1M90 J;  3AM9 A;  3C2F A;  1QPR A;  1UOU A;  1YJ9 H;  1JJ2 H;  1VQ8 H;  4IOA J;  2OTL H;  1FFU B;  2E3T A;  1Y69 K;  1VQL H;  4YYY A;  3TQV A;  1YJN H;  5HUP A;  4WFA J;  3WO0 A;  3PIO J;  1Q86 J;  2QEX H;  1FMA E;  3NVZ C;  5HUO A;  4WF9 J;  1BRW A;  1X1O A;  3C2R A;  2WK6 A;  1SB3 A;  5GAG N;  1RM6 A;  3SR6 C;  5EY3 A;  1K9M J;  1VQN H;  3CCV H;  1VQ6 H;  1QVG H;  3RPF A;  4USA A;  4U67 J;  2TPT A;  1FFV B;  5MLC O;  2ZJP J;  3CF5 J;  1Q81 J;  1WKI A;  1KQS H;  4I9A A;  1NJI J;  1YTD A;  3CCQ H;  1NVI E;  3I55 H;  1WYG A;  3FC4 A;  4IOC J;  1N61 B;  3C2O A;  4C7Y A;  3CCE H;  3VMM A;  3CCU H;  3ETR C;  3G4S H;  4LHM A;  4US9 A;  2W55 B;  3NS1 C;  3FAH A;  5MPO C;  1AZY A;  3PIP J;  3DLL J;  2I14 A;  3I56 H;  3G71 H;  1YI2 H;  1M1K J;  3BII E;  4EAD A;  1S72 H;  5DM7 J;  1VQM H;  3CPW H;  3PAJ A;  3C2V A;  4ZOH A;  5AYY A;  2W3R B;  5AYZ A;  1YJW H;  1Q7Y J;  1QAP A;  4C7Z A;  5GAH N;  1JRO B;  1VQO H;  3L4P A;  2WP4 A;  1O4U A;  4WFN J;  1DGJ A;  1QPN A;  4GA5 A;  3NRZ C;  3WNZ A;  4AP8 A;  1VDV A;  3AMZ A;  3B9J C;  4US8 A;  5AYX A;  3CCL H;  1FM0 E;  1N62 B;  3AN1 A;  2Q5W E;  1YTK A;  3C2E A;  3J7Z M;  3NVW C;  1YTE A;  1KC8 J;  2W3S B;  1W2B H;  1NVJ A;  2JBM A;  5AN9 F;  5JVG J;  1V97 A;  5JVH J;  5HL7 J;  3NVV C;  5EP8 A;  1VQ4 H;  1N5W B;  4EAF A;  3CC4 H;  3H5Q A;  3GNN A;  2DSJ A;  4GA6 A;  1K73 J; 
#chains in the Genus database with same CATH homology
 1NVJ A;  4AP8 A;  5MPO C;  1FM0 E;  1FMA E;  2OMD A;  2QIE A;  2WP4 A;  2Q5W E;  3RPF A;  1NVI E;  3BII E; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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