The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
88
|
sequence length |
273
|
structure length |
273
|
Chain Sequence |
MEIRTFLERALKEDLGHGDLFERVLEKDFKATAFVRAKQEGVFSGEKYALELLEMTGIECVQTIKDKERFKPKDALMEIRGDFSMLLKVERTLLNLLQHSSGIATLTSRFVEALNSHKVRLLDTRKTRPLLRIFEKYSVLNGGASNHRLGLDDALMLKDTHLRHVKDLKSFLTHARKNLPFTAKIEIECESFEEAKNAMNAGADIVMCDNLSVLETKEIAAYRDAHYPFVLLEASGNISLESINAYAKSGVDAISVGALIHQATFIDMHMKMA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
Probable nicotinate-nucleotide pyrophosphorylase
|
| publication title |
Crystal structure of quinolinic acid phosphoribosyltransferase from Helicobacter pylori
pubmed doi rcsb |
| source organism |
Helicobacter pylori
|
| molecule tags |
Transferase
|
| total genus |
88
|
| structure length |
273
|
| sequence length |
273
|
| chains with identical sequence |
B, C
|
| ec nomenclature |
ec
2.4.2.19: Nicotinate-nucleotide diphosphorylase (carboxylating). |
| pdb deposition date | 2005-10-04 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01729 | QRPTase_C | Quinolinate phosphoribosyl transferase, C-terminal domain |
| A | PF02749 | QRPTase_N | Quinolinate phosphoribosyl transferase, N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Aldolase class I | ||
| Alpha Beta | Alpha-Beta Complex | Aldehyde Oxidoreductase; domain 3 | Quinolinate phosphoribosyl transferase, N-terminal domain |
