1YITH

Crystal structure of virginiamycin m and s bound to the 50s ribosomal subunit of haloarcula marismortui
Total Genus 36
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
171
structure length
160
Chain Sequence
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structures of Mlsbk Antibiotics Bound to Mutated Large Ribosomal Subunits Provide a Structural Explanation for Resistance.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
molecule keywords 23S RIBOSOMAL RNA
total genus 36
structure length 160
sequence length 171
ec nomenclature
pdb deposition date 2005-01-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1yitH00
1Y69K 1YITH 1YHQH 3CC2H 5GAHN 1VQ9H 2PA2A 4WFAJ 4WF9J 3CCUH 1WKIA 5MLCO 5DM7J 3CCEH 1VQMH 2OTJH 4UY8M 2QEXH 4WFNJ 1VQ5H 2ZJRJ 3CCVH 1QVFH 4IOCJ 3OW2H 4WCEJ 3CXCH 3CCMH 1M90J 3CCLH 1YJNH 5DM6J 3CF5J 2ZJPJ 3G71H 3CCRH 5GAEN 5H1SO 1KQSH 3I55H 1VQ4H 1VQKH 1Q82J 3CMAH 5JVHJ 1Q81J 3DLLJ 1S72H 3G6EH 4U67J 3PIPJ 1JJ2H 2QA4H 1KC8J 1QVGH 1M1KJ 1VQ6H 1VQ7H 3CCQH 2ZJQJ 3CCSH 4IO9J 5AN9F 1Q86J 5GAGN 5JVGJ 1YJ9H 1KD1J 1K73J 3I56H 1VQLH 1NJIJ 1YI2H 3CPWH 3CC7H 3G4SH 3CMEH 4IOAJ 4WFBJ 1VQPH 3CCJH 3J7ZM 1YIJH 1K8AJ 1Q7YJ 5HL7J 1N8RJ 5GADN 2OTLH 1W2BH 3PIOJ 3CC4H 1K9MJ 1VQNH 3CD6H 1YJWH 1VQOH 1VQ8H
chains in the Genus database with same CATH superfamily
4LHMA 1N63B 3FC4A 1Y69K 1RM6A 5AYZA 1YITH 1O4UA 1YHQH 3CC2H 4AP8A 3C2OA 5GAHN 1VQ9H 1QPNA 2PA2A 3L4PA 1OTPA 4WFAJ 1FFVB 3WO1A 4C80A 4WF9J 3ETRC 2I14A 1FFUB 4US9A 3CCUH 3AM9A 3NRZC 1WKIA 4YYYA 5MLCO 1BRWA 1N5WB 5DM7J 2WK6A 2JBMA 3CCEH 1VQMH 2OTJH 4UY8M 2QEXH 4WFNJ 4GA6A 1VQ5H 2ZJRJ 5MPOC 3CCVH 3NVVC 2W3SB 1QVFH 4IOCJ 3OW2H 1N62B 3NVZC 4WCEJ 3CXCH 3CCMH 3NVWC 1M90J 2B7PA 3C2EA 4XR5A 3EUB4 3CCLH 4US8A 5DM6J 1YJNH 3AN1A 1YTKA 2B7QA 2J0FA 2DSJA 3CF5J 2ZJPJ 3G71H 3CCRH 1FMAE 5GAEN 1N60B 4C7YA 5H1SO 3C2VA 5HUOA 1KQSH 3I55H 1VQ4H 1V97A 1VQKH 1Q82J 4KWVA 3CMAH 1X1OA 4GA5A 5AYXA 5JVHJ 1Q81J 1JRPB 3DLLJ 4I9AA 1S72H 3G6EH 4U67J 3PIPJ 5HULA 1JJ2H 1VLBA 2QA4H 1FM0E 1KC8J 1QVGH 1M1KJ 2E3TA 1VQ6H 1VQ7H 3CCQH 3WNZA 3B9JC 1YJWH 4KWWA 2ZJQJ 3CCSH 1FIQC 1SB3A 2W3RB 4C7ZA 1N61B 4YEKA 5EY3A 1NVJA 4IO9J 5AN9F 1Q86J 4EADA 5GAGN 5JVGJ 1QAPA 3NS1C 4USAA 3GNNA 1YJ9H 1KD1J 1K73J 2TPTA 3VMMA 5EP8A 2I1OA 3I56H 1VQLH 1NJIJ 1YI2H 1QPQA 3SR6C 3CPWH 3PAJA 1DGJA 3FAHA 3WO0A 4ZOHA 3CC7H 2W55B 3G4SH 3CMEH 3H5QA 2B7NA 4GA4A 3AMZA 4IOAJ 1QPRA 4WFBJ 1YTDA 3NVYC 1VQPH 3CCJH 2WK5A 2Q5WE 3TQVA 1ZXIB 3J7ZM 1YTEA 2OMDA 4EAFA 1FO4A 1YIJH 1JROB 1Q7YJ 5HL7J 1N8RJ 1K8AJ 5GADN 1WYGA 2OTLH 5HUPA 3C2RA 1W2BH 3PIOJ 1NVIE 3C2FA 3L0GA 5AYYA 2W54B 3CC4H 1SIJA 2QIEA 4X46A 1QPOA 1UOUA 1VDVA 3BIIE 1K9MJ 1VQNH 3CD6H 3RPFA 1AZYA 1VQOH 1N5XA 2WP4A 1VQ8H
chains in the Genus database with same CATH topology
1Y69K 1YITH 1YHQH 3CC2H 5GAHN 1VQ9H 2PA2A 4WFAJ 4WF9J 3CCUH 1WKIA 5MLCO 5DM7J 3CCEH 1VQMH 2OTJH 4UY8M 2QEXH 4WFNJ 1VQ5H 2ZJRJ 3CCVH 1QVFH 4IOCJ 3OW2H 4WCEJ 3CXCH 3CCMH 1M90J 3CCLH 1YJNH 5DM6J 3CF5J 2ZJPJ 3G71H 3CCRH 5GAEN 5H1SO 1KQSH 3I55H 1VQ4H 1VQKH 1Q82J 3CMAH 5JVHJ 1Q81J 3DLLJ 1S72H 3G6EH 4U67J 3PIPJ 1JJ2H 2QA4H 1KC8J 1QVGH 1M1KJ 1VQ6H 1VQ7H 3CCQH 2ZJQJ 3CCSH 4IO9J 5AN9F 1Q86J 5GAGN 5JVGJ 1YJ9H 1KD1J 1K73J 3I56H 1VQLH 1NJIJ 1YI2H 3CPWH 3CC7H 3G4SH 3CMEH 4IOAJ 4WFBJ 1VQPH 3CCJH 3J7ZM 1YIJH 1K8AJ 1Q7YJ 5HL7J 1N8RJ 5GADN 2OTLH 1W2BH 3PIOJ 3CC4H 1K9MJ 1VQNH 3CD6H 1YJWH 1VQOH 1VQ8H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y69 K;  1YIT H;  1YHQ H;  3CC2 H;  5GAH N;  1VQ9 H;  2PA2 A;  4WFA J;  4WF9 J;  3CCU H;  1WKI A;  5MLC O;  5DM7 J;  3CCE H;  1VQM H;  2OTJ H;  4UY8 M;  2QEX H;  4WFN J;  1VQ5 H;  2ZJR J;  3CCV H;  1QVF H;  4IOC J;  3OW2 H;  4WCE J;  3CXC H;  3CCM H;  1M90 J;  3CCL H;  1YJN H;  5DM6 J;  3CF5 J;  2ZJP J;  3G71 H;  3CCR H;  5GAE N;  5H1S O;  1KQS H;  3I55 H;  1VQ4 H;  1VQK H;  1Q82 J;  3CMA H;  5JVH J;  1Q81 J;  3DLL J;  1S72 H;  3G6E H;  4U67 J;  3PIP J;  1JJ2 H;  2QA4 H;  1KC8 J;  1QVG H;  1M1K J;  1VQ6 H;  1VQ7 H;  3CCQ H;  2ZJQ J;  3CCS H;  4IO9 J;  5AN9 F;  1Q86 J;  5GAG N;  5JVG J;  1YJ9 H;  1KD1 J;  1K73 J;  3I56 H;  1VQL H;  1NJI J;  1YI2 H;  3CPW H;  3CC7 H;  3G4S H;  3CME H;  4IOA J;  4WFB J;  1VQP H;  3CCJ H;  3J7Z M;  1YIJ H;  1K8A J;  1Q7Y J;  5HL7 J;  1N8R J;  5GAD N;  2OTL H;  1W2B H;  3PIO J;  3CC4 H;  1K9M J;  1VQN H;  3CD6 H;  1YJW H;  1VQO H;  1VQ8 H; 
#chains in the Genus database with same CATH topology
 4LHM A;  1N63 B;  3FC4 A;  1Y69 K;  1RM6 A;  5AYZ A;  1YIT H;  1O4U A;  1YHQ H;  3CC2 H;  4AP8 A;  3C2O A;  5GAH N;  1VQ9 H;  1QPN A;  2PA2 A;  3L4P A;  1OTP A;  4WFA J;  1FFV B;  3WO1 A;  4C80 A;  4WF9 J;  3ETR C;  2I14 A;  1FFU B;  4US9 A;  3CCU H;  3AM9 A;  3NRZ C;  1WKI A;  4YYY A;  5MLC O;  1BRW A;  1N5W B;  5DM7 J;  2WK6 A;  2JBM A;  3CCE H;  1VQM H;  2OTJ H;  4UY8 M;  2QEX H;  4WFN J;  4GA6 A;  1VQ5 H;  2ZJR J;  5MPO C;  3CCV H;  3NVV C;  2W3S B;  1QVF H;  4IOC J;  3OW2 H;  1N62 B;  3NVZ C;  4WCE J;  3CXC H;  3CCM H;  3NVW C;  1M90 J;  2B7P A;  3C2E A;  4XR5 A;  3EUB 4;  3CCL H;  4US8 A;  5DM6 J;  1YJN H;  3AN1 A;  1YTK A;  2B7Q A;  2J0F A;  2DSJ A;  3CF5 J;  2ZJP J;  3G71 H;  3CCR H;  1FMA E;  5GAE N;  1N60 B;  4C7Y A;  5H1S O;  3C2V A;  5HUO A;  1KQS H;  3I55 H;  1VQ4 H;  1V97 A;  1VQK H;  1Q82 J;  4KWV A;  3CMA H;  1X1O A;  4GA5 A;  5AYX A;  5JVH J;  1Q81 J;  1JRP B;  3DLL J;  4I9A A;  1S72 H;  3G6E H;  4U67 J;  3PIP J;  5HUL A;  1JJ2 H;  1VLB A;  2QA4 H;  1FM0 E;  1KC8 J;  1QVG H;  1M1K J;  2E3T A;  1VQ6 H;  1VQ7 H;  3CCQ H;  3WNZ A;  3B9J C;  1YJW H;  4KWW A;  2ZJQ J;  3CCS H;  1FIQ C;  1SB3 A;  2W3R B;  4C7Z A;  1N61 B;  4YEK A;  5EY3 A;  1NVJ A;  4IO9 J;  5AN9 F;  1Q86 J;  4EAD A;  5GAG N;  5JVG J;  1QAP A;  3NS1 C;  4USA A;  3GNN A;  1YJ9 H;  1KD1 J;  1K73 J;  2TPT A;  3VMM A;  5EP8 A;  2I1O A;  3I56 H;  1VQL H;  1NJI J;  1YI2 H;  1QPQ A;  3SR6 C;  3CPW H;  3PAJ A;  1DGJ A;  3FAH A;  3WO0 A;  4ZOH A;  3CC7 H;  2W55 B;  3G4S H;  3CME H;  3H5Q A;  2B7N A;  4GA4 A;  3AMZ A;  4IOA J;  1QPR A;  4WFB J;  1YTD A;  3NVY C;  1VQP H;  3CCJ H;  2WK5 A;  2Q5W E;  3TQV A;  1ZXI B;  3J7Z M;  1YTE A;  2OMD A;  4EAF A;  1FO4 A;  1YIJ H;  1JRO B;  1Q7Y J;  5HL7 J;  1N8R J;  1K8A J;  5GAD N;  1WYG A;  2OTL H;  5HUP A;  3C2R A;  1W2B H;  3PIO J;  1NVI E;  3C2F A;  3L0G A;  5AYY A;  2W54 B;  3CC4 H;  1SIJ A;  2QIE A;  4X46 A;  1QPO A;  1UOU A;  1VDV A;  3BII E;  1K9M J;  1VQN H;  3CD6 H;  3RPF A;  1AZY A;  1VQO H;  1N5X A;  2WP4 A;  1VQ8 H; 
#chains in the Genus database with same CATH homology
 1Y69 K;  1YIT H;  1YHQ H;  3CC2 H;  5GAH N;  1VQ9 H;  2PA2 A;  4WFA J;  4WF9 J;  3CCU H;  1WKI A;  5MLC O;  5DM7 J;  3CCE H;  1VQM H;  2OTJ H;  4UY8 M;  2QEX H;  4WFN J;  1VQ5 H;  2ZJR J;  3CCV H;  1QVF H;  4IOC J;  3OW2 H;  4WCE J;  3CXC H;  3CCM H;  1M90 J;  3CCL H;  1YJN H;  5DM6 J;  3CF5 J;  2ZJP J;  3G71 H;  3CCR H;  5GAE N;  5H1S O;  1KQS H;  3I55 H;  1VQ4 H;  1VQK H;  1Q82 J;  3CMA H;  5JVH J;  1Q81 J;  3DLL J;  1S72 H;  3G6E H;  4U67 J;  3PIP J;  1JJ2 H;  2QA4 H;  1KC8 J;  1QVG H;  1M1K J;  1VQ6 H;  1VQ7 H;  3CCQ H;  2ZJQ J;  3CCS H;  4IO9 J;  5AN9 F;  1Q86 J;  5GAG N;  5JVG J;  1YJ9 H;  1KD1 J;  1K73 J;  3I56 H;  1VQL H;  1NJI J;  1YI2 H;  3CPW H;  3CC7 H;  3G4S H;  3CME H;  4IOA J;  4WFB J;  1VQP H;  3CCJ H;  3J7Z M;  1YIJ H;  1K8A J;  1Q7Y J;  5HL7 J;  1N8R J;  5GAD N;  2OTL H;  1W2B H;  3PIO J;  3CC4 H;  1K9M J;  1VQN H;  3CD6 H;  1YJW H;  1VQO H;  1VQ8 H; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...