2PA2A

Crystal structure of human ribosomal protein l10 core domain
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
137
structure length
108
Chain Sequence
KAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Human Ribosomal Protein L10 Core Domain Reveals Eukaryote-Specific Motifs in Addition to the Conserved Fold
pubmed doi rcsb
molecule tags Ribosomal protein
source organism Homo sapiens
molecule keywords 60S ribosomal protein L10
total genus 28
structure length 108
sequence length 137
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-03-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 2pa2A00
1YJ9H 4IO9J 3CMAH 4UY8M 3CCUH 1Q86J 1WKIA 1K8AJ 5MLCO 2ZJQJ 3CPWH 3G4SH 2QEXH 4WCEJ 3CCQH 2OTJH 1KD1J 3PIPJ 5GADN 1VQ6H 5HL7J 2OTLH 3CC2H 1KQSH 1JJ2H 3G71H 2ZJPJ 1VQNH 3CF5J 3CCSH 3CCLH 4WFNJ 1NJIJ 1VQ5H 1W2BH 1M90J 1K73J 1VQ9H 5JVHJ 1YITH 3DLLJ 1YHQH 2ZJRJ 3G6EH 3CXCH 3CC4H 5GAHN 1Y69K 1VQ8H 3CC7H 5DM6J 1M1KJ 1S72H 1Q82J 1YJWH 5H1SO 1QVGH 3CD6H 3CCEH 1N8RJ 1VQMH 1YJNH 2PA2A 3CCVH 3CCJH 4WF9J 1Q81J 4WFAJ 1VQOH 1VQKH 3OW2H 1VQPH 3I55H 3PIOJ 1K9MJ 1Q7YJ 5AN9F 1YI2H 4WFBJ 5GAEN 3I56H 3CCMH 1VQ7H 3CMEH 1QVFH 3J7ZM 4IOAJ 5DM7J 3CCRH 1YIJH 1VQLH 4U67J 4IOCJ 5GAGN 2QA4H 5JVGJ 1VQ4H 1KC8J
chains in the Genus database with same CATH superfamily
1YJ9H 1ZXIB 4I9AA 2W54B 1FM0E 4IO9J 3C2RA 4US9A 4YYYA 3CMAH 1QAPA 4UY8M 3CCUH 1Q86J 1WKIA 1K8AJ 1VDVA 2OMDA 4KWWA 1FO4A 5MLCO 1N62B 2I14A 1VLBA 1UOUA 2ZJQJ 3CPWH 3AM9A 3NRZC 3G4SH 2QEXH 1JROB 1QPOA 2DSJA 4C7YA 4WCEJ 3CCQH 4USAA 2OTJH 1KD1J 1OTPA 1N60B 3RPFA 3PIPJ 5GADN 3SR6C 1VQ6H 1WYGA 5HL7J 1QPQA 2W3RB 2OTLH 3CC2H 5AYYA 1QPRA 1KQSH 1JJ2H 3G71H 2ZJPJ 1N63B 5HULA 1FFUB 2Q5WE 1VQNH 3CF5J 3CCSH 2WP4A 4YEKA 3CCLH 3NVWC 3C2OA 4WFNJ 1X1OA 1SB3A 4EAFA 1NJIJ 3C2EA 5AYZA 1VQ5H 2B7NA 1W2BH 1M90J 1K73J 4ZOHA 5JVHJ 1VQ9H 3PAJA 3BIIE 2E3TA 1YITH 1V97A 2I1OA 3DLLJ 1YHQH 4C7ZA 2ZJRJ 3VMMA 1DGJA 2J0FA 5MPOC 5EP8A 1YTDA 1N5XA 1YTKA 2WK6A 3G6EH 3CXCH 3CC4H 1BRWA 5GAHN 1Y69K 1VQ8H 3WNZA 3CC7H 1KC8J 3H5QA 4X46A 5DM6J 3NS1C 4C80A 1M1KJ 1S72H 1Q82J 1QPNA 3L4PA 1YJWH 4AP8A 5EY3A 5H1SO 1QVGH 1JRPB 3CD6H 1FMAE 3CCEH 1N8RJ 1VQMH 3C2VA 1N5WB 2B7QA 1YJNH 2PA2A 3CCVH 1NVJA 3CCJH 1O4UA 4WF9J 3B9JC 3NVZC 4GA6A 2QIEA 3C2FA 2W55B 3AMZA 3ETRC 4XR5A 4EADA 3AN1A 3WO0A 3NVVC 4GA5A 1Q81J 4GA4A 4WFAJ 1VQOH 1YTEA 1VQKH 2B7PA 3TQVA 3OW2H 1FIQC 1FFVB 1RM6A 1VQPH 3I55H 2JBMA 2W3SB 3PIOJ 3WO1A 1K9MJ 1Q7YJ 5HUPA 5AN9F 3EUB4 1YI2H 4WFBJ 3GNNA 1NVIE 5HUOA 4KWVA 4US8A 2WK5A 3FC4A 1AZYA 1N61B 5GAEN 3I56H 3CCMH 1VQ7H 3CMEH 1QVFH 3J7ZM 4IOAJ 5DM7J 3CCRH 3NVYC 1SIJA 1YIJH 1VQLH 4U67J 3FAHA 4IOCJ 3L0GA 5GAGN 2QA4H 5JVGJ 5AYXA 4LHMA 1VQ4H 2TPTA
chains in the Genus database with same CATH topology
1YJ9H 4IO9J 3CMAH 4UY8M 3CCUH 1Q86J 1WKIA 1K8AJ 5MLCO 2ZJQJ 3CPWH 3G4SH 2QEXH 4WCEJ 3CCQH 2OTJH 1KD1J 3PIPJ 5GADN 1VQ6H 5HL7J 2OTLH 3CC2H 1KQSH 1JJ2H 3G71H 2ZJPJ 1VQNH 3CF5J 3CCSH 3CCLH 4WFNJ 1NJIJ 1VQ5H 1W2BH 1M90J 1K73J 1VQ9H 5JVHJ 1YITH 3DLLJ 1YHQH 2ZJRJ 3G6EH 3CXCH 3CC4H 5GAHN 1Y69K 1VQ8H 3CC7H 5DM6J 1M1KJ 1S72H 1Q82J 1YJWH 5H1SO 1QVGH 3CD6H 3CCEH 1N8RJ 1VQMH 1YJNH 2PA2A 3CCVH 3CCJH 4WF9J 1Q81J 4WFAJ 1VQOH 1VQKH 3OW2H 1VQPH 3I55H 3PIOJ 1K9MJ 1Q7YJ 5AN9F 1YI2H 4WFBJ 5GAEN 3I56H 3CCMH 1VQ7H 3CMEH 1QVFH 3J7ZM 4IOAJ 5DM7J 3CCRH 1YIJH 1VQLH 4U67J 4IOCJ 5GAGN 2QA4H 5JVGJ 1VQ4H 1KC8J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YJ9 H;  4IO9 J;  3CMA H;  4UY8 M;  3CCU H;  1Q86 J;  1WKI A;  1K8A J;  5MLC O;  2ZJQ J;  3CPW H;  3G4S H;  2QEX H;  4WCE J;  3CCQ H;  2OTJ H;  1KD1 J;  3PIP J;  5GAD N;  1VQ6 H;  5HL7 J;  2OTL H;  3CC2 H;  1KQS H;  1JJ2 H;  3G71 H;  2ZJP J;  1VQN H;  3CF5 J;  3CCS H;  3CCL H;  4WFN J;  1NJI J;  1VQ5 H;  1W2B H;  1M90 J;  1K73 J;  1VQ9 H;  5JVH J;  1YIT H;  3DLL J;  1YHQ H;  2ZJR J;  3G6E H;  3CXC H;  3CC4 H;  5GAH N;  1Y69 K;  1VQ8 H;  3CC7 H;  5DM6 J;  1M1K J;  1S72 H;  1Q82 J;  1YJW H;  5H1S O;  1QVG H;  3CD6 H;  3CCE H;  1N8R J;  1VQM H;  1YJN H;  2PA2 A;  3CCV H;  3CCJ H;  4WF9 J;  1Q81 J;  4WFA J;  1VQO H;  1VQK H;  3OW2 H;  1VQP H;  3I55 H;  3PIO J;  1K9M J;  1Q7Y J;  5AN9 F;  1YI2 H;  4WFB J;  5GAE N;  3I56 H;  3CCM H;  1VQ7 H;  3CME H;  1QVF H;  3J7Z M;  4IOA J;  5DM7 J;  3CCR H;  1YIJ H;  1VQL H;  4U67 J;  4IOC J;  5GAG N;  2QA4 H;  5JVG J;  1VQ4 H;  1KC8 J; 
#chains in the Genus database with same CATH topology
 1YJ9 H;  1ZXI B;  4I9A A;  2W54 B;  1FM0 E;  4IO9 J;  3C2R A;  4US9 A;  4YYY A;  3CMA H;  1QAP A;  4UY8 M;  3CCU H;  1Q86 J;  1WKI A;  1K8A J;  1VDV A;  2OMD A;  4KWW A;  1FO4 A;  5MLC O;  1N62 B;  2I14 A;  1VLB A;  1UOU A;  2ZJQ J;  3CPW H;  3AM9 A;  3NRZ C;  3G4S H;  2QEX H;  1JRO B;  1QPO A;  2DSJ A;  4C7Y A;  4WCE J;  3CCQ H;  4USA A;  2OTJ H;  1KD1 J;  1OTP A;  1N60 B;  3RPF A;  3PIP J;  5GAD N;  3SR6 C;  1VQ6 H;  1WYG A;  5HL7 J;  1QPQ A;  2W3R B;  2OTL H;  3CC2 H;  5AYY A;  1QPR A;  1KQS H;  1JJ2 H;  3G71 H;  2ZJP J;  1N63 B;  5HUL A;  1FFU B;  2Q5W E;  1VQN H;  3CF5 J;  3CCS H;  2WP4 A;  4YEK A;  3CCL H;  3NVW C;  3C2O A;  4WFN J;  1X1O A;  1SB3 A;  4EAF A;  1NJI J;  3C2E A;  5AYZ A;  1VQ5 H;  2B7N A;  1W2B H;  1M90 J;  1K73 J;  4ZOH A;  5JVH J;  1VQ9 H;  3PAJ A;  3BII E;  2E3T A;  1YIT H;  1V97 A;  2I1O A;  3DLL J;  1YHQ H;  4C7Z A;  2ZJR J;  3VMM A;  1DGJ A;  2J0F A;  5MPO C;  5EP8 A;  1YTD A;  1N5X A;  1YTK A;  2WK6 A;  3G6E H;  3CXC H;  3CC4 H;  1BRW A;  5GAH N;  1Y69 K;  1VQ8 H;  3WNZ A;  3CC7 H;  1KC8 J;  3H5Q A;  4X46 A;  5DM6 J;  3NS1 C;  4C80 A;  1M1K J;  1S72 H;  1Q82 J;  1QPN A;  3L4P A;  1YJW H;  4AP8 A;  5EY3 A;  5H1S O;  1QVG H;  1JRP B;  3CD6 H;  1FMA E;  3CCE H;  1N8R J;  1VQM H;  3C2V A;  1N5W B;  2B7Q A;  1YJN H;  2PA2 A;  3CCV H;  1NVJ A;  3CCJ H;  1O4U A;  4WF9 J;  3B9J C;  3NVZ C;  4GA6 A;  2QIE A;  3C2F A;  2W55 B;  3AMZ A;  3ETR C;  4XR5 A;  4EAD A;  3AN1 A;  3WO0 A;  3NVV C;  4GA5 A;  1Q81 J;  4GA4 A;  4WFA J;  1VQO H;  1YTE A;  1VQK H;  2B7P A;  3TQV A;  3OW2 H;  1FIQ C;  1FFV B;  1RM6 A;  1VQP H;  3I55 H;  2JBM A;  2W3S B;  3PIO J;  3WO1 A;  1K9M J;  1Q7Y J;  5HUP A;  5AN9 F;  3EUB 4;  1YI2 H;  4WFB J;  3GNN A;  1NVI E;  5HUO A;  4KWV A;  4US8 A;  2WK5 A;  3FC4 A;  1AZY A;  1N61 B;  5GAE N;  3I56 H;  3CCM H;  1VQ7 H;  3CME H;  1QVF H;  3J7Z M;  4IOA J;  5DM7 J;  3CCR H;  3NVY C;  1SIJ A;  1YIJ H;  1VQL H;  4U67 J;  3FAH A;  4IOC J;  3L0G A;  5GAG N;  2QA4 H;  5JVG J;  5AYX A;  4LHM A;  1VQ4 H;  2TPT A; 
#chains in the Genus database with same CATH homology
 1YJ9 H;  4IO9 J;  3CMA H;  4UY8 M;  3CCU H;  1Q86 J;  1WKI A;  1K8A J;  5MLC O;  2ZJQ J;  3CPW H;  3G4S H;  2QEX H;  4WCE J;  3CCQ H;  2OTJ H;  1KD1 J;  3PIP J;  5GAD N;  1VQ6 H;  5HL7 J;  2OTL H;  3CC2 H;  1KQS H;  1JJ2 H;  3G71 H;  2ZJP J;  1VQN H;  3CF5 J;  3CCS H;  3CCL H;  4WFN J;  1NJI J;  1VQ5 H;  1W2B H;  1M90 J;  1K73 J;  1VQ9 H;  5JVH J;  1YIT H;  3DLL J;  1YHQ H;  2ZJR J;  3G6E H;  3CXC H;  3CC4 H;  5GAH N;  1Y69 K;  1VQ8 H;  3CC7 H;  5DM6 J;  1M1K J;  1S72 H;  1Q82 J;  1YJW H;  5H1S O;  1QVG H;  3CD6 H;  3CCE H;  1N8R J;  1VQM H;  1YJN H;  2PA2 A;  3CCV H;  3CCJ H;  4WF9 J;  1Q81 J;  4WFA J;  1VQO H;  1VQK H;  3OW2 H;  1VQP H;  3I55 H;  3PIO J;  1K9M J;  1Q7Y J;  5AN9 F;  1YI2 H;  4WFB J;  5GAE N;  3I56 H;  3CCM H;  1VQ7 H;  3CME H;  1QVF H;  3J7Z M;  4IOA J;  5DM7 J;  3CCR H;  1YIJ H;  1VQL H;  4U67 J;  4IOC J;  5GAG N;  2QA4 H;  5JVG J;  1VQ4 H;  1KC8 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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