2WP4A

Crystal structure of rv3119 from mycobacterium tuberculosis
Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
128
structure length
121
Chain Sequence
YPYCRLTDQPLSVDEVLAAVSGPEQGGIVIFVGNVRDTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (22-28)AH2 (62-78)S4 (84-90)EMPTYS3 (55-59)AH3 (110-127)S6 (98-107)S5 (92-94)TVIII2 (107-110)TI1 (31-34)TII1 (80-83)S2 (36-44)TII2 (95-98)S1 (13-16)Updating...
connected with : NaN
molecule tags Transferase
source organism Mycobacterium tuberculosis
publication title Crystal Structure of Rv3119 from Mycobacterium Tuberculosis
rcsb
molecule keywords MOLYBDOPTERIN-CONVERTING FACTOR SUBUNIT 2 1
total genus 32
structure length 121
sequence length 128
chains with identical sequence B
ec nomenclature ec 2.8.1.12: Molybdopterin synthase.
pdb deposition date 2009-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02391 MoaE MoaE protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.40 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Molybdopterin biosynthesis MoaE subunit 2wp4A00
1NVJA 2WP4A 3RPFA 3BIIE 2QIEA 5MPOC 1NVIE 2Q5WE 4AP8A 2OMDA 1FMAE 1FM0E
chains in the Genus database with same CATH superfamily
1NVJA 1UOUA 3BIIE 3SR6C 3C2FA 3WO1A 5JVGJ 3L4PA 1FIQC 3FC4A 1JJ2H 1AZYA 5AN9F 1KD1J 1VQKH 3RPFA 1N5XA 1VQMH 2J0FA 3NVWC 5AYZA 1N5WB 4YEKA 2OTJH 2WK6A 2Q5WE 2B7PA 1QPOA 4YYYA 4US9A 4WF9J 1YIJH 5AYXA 1QPQA 1O4UA 3FAHA 5MPOC 3J7ZM 3OW2H 1Q86J 1YTKA 1YJ9H 2B7QA 4I9AA 2WK5A 1Q7YJ 2DSJA 1Q81J 2WP4A 3CC2H 3H5QA 1YJNH 2QIEA 1RM6A 3C2OA 1NJIJ 1WYGA 5HUPA 4C7ZA 3CC4H 4UY8M 2OMDA 2I14A 5GAHN 3CMAH 2W55B 2PA2A 3CCSH 3I56H 4LHMA 3NS1C 1VDVA 2W3SB 5AYYA 4WFBJ 1V97A 3WNZA 3G4SH 1YITH 1FMAE 1JROB 1VQ7H 1BRWA 1VQ6H 3AN1A 1VQ4H 3CCLH 1N60B 1VLBA 3CCQH 1SIJA 1VQPH 3CMEH 4U67J 1N8RJ 2ZJPJ 4C7YA 3B9JC 1QVFH 4EAFA 1KC8J 1QPRA 2I1OA 1VQ5H 5JVHJ 2ZJRJ 2QEXH 3EUB4 3CD6H 3AMZA 5DM7J 3PAJA 5MLCO 1VQ9H 2JBMA 4IOAJ 1K73J 3AM9A 4WFAJ 1SB3A 5EP8A 1K8AJ 3PIOJ 2OTLH 3G6EH 3C2RA 1QPNA 1N62B 3CCEH 1VQ8H 5EY3A 3NRZC 3CXCH 3WO0A 1K9MJ 1N61B 3CCVH 1FFVB 1W2BH 3G71H 1YJWH 1YHQH 4ZOHA 5GAGN 1Y69K 4IOCJ 2E3TA 2QA4H 2W54B 4IO9J 4GA5A 1YI2H 1JRPB 5GAEN 3CC7H 5H1SO 3PIPJ 4X46A 4C80A 5GADN 3CPWH 4KWWA 1NVIE 4AP8A 1WKIA 3C2VA 1VQNH 3L0GA 4US8A 1X1OA 3ETRC 3CCUH 1S72H 1KQSH 4KWVA 1ZXIB 4GA4A 3CCMH 2B7NA 3NVZC 3VMMA 3CCRH 3NVYC 1VQOH 1Q82J 3CF5J 5HUOA 1VQLH 5DM6J 1FM0E 4WCEJ 4XR5A 3C2EA 3NVVC 3CCJH 1QAPA 1N63B 3GNNA 4EADA 3TQVA 1M1KJ 4USAA 1YTDA 2TPTA 5HL7J 5HULA 3I55H 4GA6A 4WFNJ 1FO4A 1YTEA 1OTPA 1FFUB 1QVGH 3DLLJ 1M90J 1DGJA 2ZJQJ 2W3RB
chains in the Genus database with same CATH topology
1NVJA 2WP4A 3RPFA 3BIIE 2QIEA 5MPOC 1NVIE 2Q5WE 4AP8A 2OMDA 1FMAE 1FM0E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NVJ A;  2WP4 A;  3RPF A;  3BII E;  2QIE A;  5MPO C;  1NVI E;  2Q5W E;  4AP8 A;  2OMD A;  1FMA E;  1FM0 E; 
#chains in the Genus database with same CATH topology
 1NVJ A;  1UOU A;  3BII E;  3SR6 C;  3C2F A;  3WO1 A;  5JVG J;  3L4P A;  1FIQ C;  3FC4 A;  1JJ2 H;  1AZY A;  5AN9 F;  1KD1 J;  1VQK H;  3RPF A;  1N5X A;  1VQM H;  2J0F A;  3NVW C;  5AYZ A;  1N5W B;  4YEK A;  2OTJ H;  2WK6 A;  2Q5W E;  2B7P A;  1QPO A;  4YYY A;  4US9 A;  4WF9 J;  1YIJ H;  5AYX A;  1QPQ A;  1O4U A;  3FAH A;  5MPO C;  3J7Z M;  3OW2 H;  1Q86 J;  1YTK A;  1YJ9 H;  2B7Q A;  4I9A A;  2WK5 A;  1Q7Y J;  2DSJ A;  1Q81 J;  2WP4 A;  3CC2 H;  3H5Q A;  1YJN H;  2QIE A;  1RM6 A;  3C2O A;  1NJI J;  1WYG A;  5HUP A;  4C7Z A;  3CC4 H;  4UY8 M;  2OMD A;  2I14 A;  5GAH N;  3CMA H;  2W55 B;  2PA2 A;  3CCS H;  3I56 H;  4LHM A;  3NS1 C;  1VDV A;  2W3S B;  5AYY A;  4WFB J;  1V97 A;  3WNZ A;  3G4S H;  1YIT H;  1FMA E;  1JRO B;  1VQ7 H;  1BRW A;  1VQ6 H;  3AN1 A;  1VQ4 H;  3CCL H;  1N60 B;  1VLB A;  3CCQ H;  1SIJ A;  1VQP H;  3CME H;  4U67 J;  1N8R J;  2ZJP J;  4C7Y A;  3B9J C;  1QVF H;  4EAF A;  1KC8 J;  1QPR A;  2I1O A;  1VQ5 H;  5JVH J;  2ZJR J;  2QEX H;  3EUB 4;  3CD6 H;  3AMZ A;  5DM7 J;  3PAJ A;  5MLC O;  1VQ9 H;  2JBM A;  4IOA J;  1K73 J;  3AM9 A;  4WFA J;  1SB3 A;  5EP8 A;  1K8A J;  3PIO J;  2OTL H;  3G6E H;  3C2R A;  1QPN A;  1N62 B;  3CCE H;  1VQ8 H;  5EY3 A;  3NRZ C;  3CXC H;  3WO0 A;  1K9M J;  1N61 B;  3CCV H;  1FFV B;  1W2B H;  3G71 H;  1YJW H;  1YHQ H;  4ZOH A;  5GAG N;  1Y69 K;  4IOC J;  2E3T A;  2QA4 H;  2W54 B;  4IO9 J;  4GA5 A;  1YI2 H;  1JRP B;  5GAE N;  3CC7 H;  5H1S O;  3PIP J;  4X46 A;  4C80 A;  5GAD N;  3CPW H;  4KWW A;  1NVI E;  4AP8 A;  1WKI A;  3C2V A;  1VQN H;  3L0G A;  4US8 A;  1X1O A;  3ETR C;  3CCU H;  1S72 H;  1KQS H;  4KWV A;  1ZXI B;  4GA4 A;  3CCM H;  2B7N A;  3NVZ C;  3VMM A;  3CCR H;  3NVY C;  1VQO H;  1Q82 J;  3CF5 J;  5HUO A;  1VQL H;  5DM6 J;  1FM0 E;  4WCE J;  4XR5 A;  3C2E A;  3NVV C;  3CCJ H;  1QAP A;  1N63 B;  3GNN A;  4EAD A;  3TQV A;  1M1K J;  4USA A;  1YTD A;  2TPT A;  5HL7 J;  5HUL A;  3I55 H;  4GA6 A;  4WFN J;  1FO4 A;  1YTE A;  1OTP A;  1FFU B;  1QVG H;  3DLL J;  1M90 J;  1DGJ A;  2ZJQ J;  2W3R B; 
#chains in the Genus database with same CATH homology
 1NVJ A;  2WP4 A;  3RPF A;  3BII E;  2QIE A;  5MPO C;  1NVI E;  2Q5W E;  4AP8 A;  2OMD A;  1FMA E;  1FM0 E; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.