2ZJQJ

Interaction of l7 with l11 induced by microccocin binding to the deinococcus radiodurans 50s subunit
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
136
structure length
136
Chain Sequence
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O1 (62-64)TIV1 (22-25)EMPTYS7 (130-133)S6 (102-106)TIV2 (28-31)TII1 (99-102)S5 (93-98)AH2 (118-124)S1 (34-37)AH1 (45-58)TIV5 (115-118)TI1 (89-92)3H1 (113-115)S2 (41-44)TIV3 (59-62)Updating...
connected with : NaN
molecule tags Ribosome
publication title Translational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin.
pubmed doi rcsb
molecule keywords ribosomal 23S RNA
total genus 18
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2008-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 2zjqJ01
5JVGJ 1JJ2H 5AN9F 1KD1J 1VQKH 1VQMH 2OTJH 1YIJH 4WF9J 1Q86J 3OW2H 3J7ZM 1YJ9H 1Q7YJ 1Q81J 3CC2H 1YJNH 4UY8M 1NJIJ 3CC4H 5GAHN 3CMAH 2PA2A 3CCSH 3I56H 4WFBJ 3G4SH 1YITH 1VQ7H 1VQ6H 1VQ4H 3CCLH 1VQPH 3CCQH 3CMEH 4U67J 1N8RJ 2ZJPJ 1QVFH 1KC8J 1VQ5H 5JVHJ 2ZJRJ 2QEXH 3CD6H 5DM7J 5MLCO 1VQ9H 4IOAJ 1K73J 4WFAJ 1K8AJ 3PIOJ 2OTLH 3G6EH 3CCEH 1VQ8H 3CXCH 1K9MJ 3CCVH 1W2BH 3G71H 1YJWH 1YHQH 5GAGN 1Y69K 4IOCJ 2QA4H 4IO9J 1YI2H 5GAEN 3CC7H 5H1SO 3PIPJ 5GADN 3CPWH 1WKIA 1VQNH 3CCUH 1S72H 1KQSH 3CCMH 3CCRH 1VQOH 1Q82J 3CF5J 1VQLH 5DM6J 4WCEJ 3CCJH 1M1KJ 5HL7J 3I55H 4WFNJ 1QVGH 3DLLJ 1M90J 2ZJQJ
chains in the Genus database with same CATH superfamily
1NVJA 1UOUA 3BIIE 3SR6C 3C2FA 3WO1A 5JVGJ 3L4PA 1FIQC 3FC4A 1JJ2H 1AZYA 5AN9F 1KD1J 1VQKH 3RPFA 1N5XA 1VQMH 2J0FA 3NVWC 5AYZA 1N5WB 4YEKA 2OTJH 2WK6A 2Q5WE 2B7PA 1QPOA 4YYYA 4US9A 4WF9J 1YIJH 5AYXA 1QPQA 1O4UA 3FAHA 5MPOC 3J7ZM 3OW2H 1Q86J 1YTKA 1YJ9H 2B7QA 4I9AA 2WK5A 1Q7YJ 2DSJA 1Q81J 2WP4A 3CC2H 3H5QA 1YJNH 2QIEA 1RM6A 3C2OA 1NJIJ 1WYGA 5HUPA 4C7ZA 3CC4H 4UY8M 2OMDA 2I14A 5GAHN 3CMAH 2W55B 2PA2A 3CCSH 3I56H 4LHMA 3NS1C 1VDVA 2W3SB 5AYYA 4WFBJ 1V97A 3WNZA 3G4SH 1YITH 1FMAE 1JROB 1VQ7H 1BRWA 1VQ6H 3AN1A 1VQ4H 3CCLH 1N60B 1VLBA 3CCQH 1SIJA 1VQPH 3CMEH 4U67J 1N8RJ 2ZJPJ 4C7YA 3B9JC 1QVFH 4EAFA 1KC8J 1QPRA 2I1OA 1VQ5H 5JVHJ 2ZJRJ 2QEXH 3EUB4 3CD6H 3AMZA 5DM7J 3PAJA 5MLCO 1VQ9H 2JBMA 4IOAJ 1K73J 3AM9A 4WFAJ 1SB3A 5EP8A 1K8AJ 3PIOJ 2OTLH 3G6EH 3C2RA 1QPNA 1N62B 3CCEH 1VQ8H 5EY3A 3NRZC 3CXCH 3WO0A 1K9MJ 1N61B 3CCVH 1FFVB 1W2BH 3G71H 1YJWH 1YHQH 4ZOHA 5GAGN 1Y69K 4IOCJ 2E3TA 2QA4H 2W54B 4IO9J 4GA5A 1YI2H 1JRPB 5GAEN 3CC7H 5H1SO 3PIPJ 4X46A 4C80A 5GADN 3CPWH 4KWWA 1NVIE 4AP8A 1WKIA 3C2VA 1VQNH 3L0GA 4US8A 1X1OA 3ETRC 3CCUH 1S72H 1KQSH 4KWVA 1ZXIB 4GA4A 3CCMH 2B7NA 3NVZC 3VMMA 3CCRH 3NVYC 1VQOH 1Q82J 3CF5J 5HUOA 1VQLH 5DM6J 1FM0E 4WCEJ 4XR5A 3C2EA 3NVVC 3CCJH 1QAPA 1N63B 3GNNA 4EADA 3TQVA 1M1KJ 4USAA 1YTDA 2TPTA 5HL7J 5HULA 3I55H 4GA6A 4WFNJ 1FO4A 1YTEA 1OTPA 1FFUB 1QVGH 3DLLJ 1M90J 1DGJA 2ZJQJ 2W3RB
chains in the Genus database with same CATH topology
5JVGJ 1JJ2H 5AN9F 1KD1J 1VQKH 1VQMH 2OTJH 1YIJH 4WF9J 1Q86J 3OW2H 3J7ZM 1YJ9H 1Q7YJ 1Q81J 3CC2H 1YJNH 4UY8M 1NJIJ 3CC4H 5GAHN 3CMAH 2PA2A 3CCSH 3I56H 4WFBJ 3G4SH 1YITH 1VQ7H 1VQ6H 1VQ4H 3CCLH 1VQPH 3CCQH 3CMEH 4U67J 1N8RJ 2ZJPJ 1QVFH 1KC8J 1VQ5H 5JVHJ 2ZJRJ 2QEXH 3CD6H 5DM7J 5MLCO 1VQ9H 4IOAJ 1K73J 4WFAJ 1K8AJ 3PIOJ 2OTLH 3G6EH 3CCEH 1VQ8H 3CXCH 1K9MJ 3CCVH 1W2BH 3G71H 1YJWH 1YHQH 5GAGN 1Y69K 4IOCJ 2QA4H 4IO9J 1YI2H 5GAEN 3CC7H 5H1SO 3PIPJ 5GADN 3CPWH 1WKIA 1VQNH 3CCUH 1S72H 1KQSH 3CCMH 3CCRH 1VQOH 1Q82J 3CF5J 1VQLH 5DM6J 4WCEJ 3CCJH 1M1KJ 5HL7J 3I55H 4WFNJ 1QVGH 3DLLJ 1M90J 2ZJQJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5JVG J;  1JJ2 H;  5AN9 F;  1KD1 J;  1VQK H;  1VQM H;  2OTJ H;  1YIJ H;  4WF9 J;  1Q86 J;  3OW2 H;  3J7Z M;  1YJ9 H;  1Q7Y J;  1Q81 J;  3CC2 H;  1YJN H;  4UY8 M;  1NJI J;  3CC4 H;  5GAH N;  3CMA H;  2PA2 A;  3CCS H;  3I56 H;  4WFB J;  3G4S H;  1YIT H;  1VQ7 H;  1VQ6 H;  1VQ4 H;  3CCL H;  1VQP H;  3CCQ H;  3CME H;  4U67 J;  1N8R J;  2ZJP J;  1QVF H;  1KC8 J;  1VQ5 H;  5JVH J;  2ZJR J;  2QEX H;  3CD6 H;  5DM7 J;  5MLC O;  1VQ9 H;  4IOA J;  1K73 J;  4WFA J;  1K8A J;  3PIO J;  2OTL H;  3G6E H;  3CCE H;  1VQ8 H;  3CXC H;  1K9M J;  3CCV H;  1W2B H;  3G71 H;  1YJW H;  1YHQ H;  5GAG N;  1Y69 K;  4IOC J;  2QA4 H;  4IO9 J;  1YI2 H;  5GAE N;  3CC7 H;  5H1S O;  3PIP J;  5GAD N;  3CPW H;  1WKI A;  1VQN H;  3CCU H;  1S72 H;  1KQS H;  3CCM H;  3CCR H;  1VQO H;  1Q82 J;  3CF5 J;  1VQL H;  5DM6 J;  4WCE J;  3CCJ H;  1M1K J;  5HL7 J;  3I55 H;  4WFN J;  1QVG H;  3DLL J;  1M90 J;  2ZJQ J; 
#chains in the Genus database with same CATH topology
 1NVJ A;  1UOU A;  3BII E;  3SR6 C;  3C2F A;  3WO1 A;  5JVG J;  3L4P A;  1FIQ C;  3FC4 A;  1JJ2 H;  1AZY A;  5AN9 F;  1KD1 J;  1VQK H;  3RPF A;  1N5X A;  1VQM H;  2J0F A;  3NVW C;  5AYZ A;  1N5W B;  4YEK A;  2OTJ H;  2WK6 A;  2Q5W E;  2B7P A;  1QPO A;  4YYY A;  4US9 A;  4WF9 J;  1YIJ H;  5AYX A;  1QPQ A;  1O4U A;  3FAH A;  5MPO C;  3J7Z M;  3OW2 H;  1Q86 J;  1YTK A;  1YJ9 H;  2B7Q A;  4I9A A;  2WK5 A;  1Q7Y J;  2DSJ A;  1Q81 J;  2WP4 A;  3CC2 H;  3H5Q A;  1YJN H;  2QIE A;  1RM6 A;  3C2O A;  1NJI J;  1WYG A;  5HUP A;  4C7Z A;  3CC4 H;  4UY8 M;  2OMD A;  2I14 A;  5GAH N;  3CMA H;  2W55 B;  2PA2 A;  3CCS H;  3I56 H;  4LHM A;  3NS1 C;  1VDV A;  2W3S B;  5AYY A;  4WFB J;  1V97 A;  3WNZ A;  3G4S H;  1YIT H;  1FMA E;  1JRO B;  1VQ7 H;  1BRW A;  1VQ6 H;  3AN1 A;  1VQ4 H;  3CCL H;  1N60 B;  1VLB A;  3CCQ H;  1SIJ A;  1VQP H;  3CME H;  4U67 J;  1N8R J;  2ZJP J;  4C7Y A;  3B9J C;  1QVF H;  4EAF A;  1KC8 J;  1QPR A;  2I1O A;  1VQ5 H;  5JVH J;  2ZJR J;  2QEX H;  3EUB 4;  3CD6 H;  3AMZ A;  5DM7 J;  3PAJ A;  5MLC O;  1VQ9 H;  2JBM A;  4IOA J;  1K73 J;  3AM9 A;  4WFA J;  1SB3 A;  5EP8 A;  1K8A J;  3PIO J;  2OTL H;  3G6E H;  3C2R A;  1QPN A;  1N62 B;  3CCE H;  1VQ8 H;  5EY3 A;  3NRZ C;  3CXC H;  3WO0 A;  1K9M J;  1N61 B;  3CCV H;  1FFV B;  1W2B H;  3G71 H;  1YJW H;  1YHQ H;  4ZOH A;  5GAG N;  1Y69 K;  4IOC J;  2E3T A;  2QA4 H;  2W54 B;  4IO9 J;  4GA5 A;  1YI2 H;  1JRP B;  5GAE N;  3CC7 H;  5H1S O;  3PIP J;  4X46 A;  4C80 A;  5GAD N;  3CPW H;  4KWW A;  1NVI E;  4AP8 A;  1WKI A;  3C2V A;  1VQN H;  3L0G A;  4US8 A;  1X1O A;  3ETR C;  3CCU H;  1S72 H;  1KQS H;  4KWV A;  1ZXI B;  4GA4 A;  3CCM H;  2B7N A;  3NVZ C;  3VMM A;  3CCR H;  3NVY C;  1VQO H;  1Q82 J;  3CF5 J;  5HUO A;  1VQL H;  5DM6 J;  1FM0 E;  4WCE J;  4XR5 A;  3C2E A;  3NVV C;  3CCJ H;  1QAP A;  1N63 B;  3GNN A;  4EAD A;  3TQV A;  1M1K J;  4USA A;  1YTD A;  2TPT A;  5HL7 J;  5HUL A;  3I55 H;  4GA6 A;  4WFN J;  1FO4 A;  1YTE A;  1OTP A;  1FFU B;  1QVG H;  3DLL J;  1M90 J;  1DGJ A;  2ZJQ J;  2W3R B; 
#chains in the Genus database with same CATH homology
 5JVG J;  1JJ2 H;  5AN9 F;  1KD1 J;  1VQK H;  1VQM H;  2OTJ H;  1YIJ H;  4WF9 J;  1Q86 J;  3OW2 H;  3J7Z M;  1YJ9 H;  1Q7Y J;  1Q81 J;  3CC2 H;  1YJN H;  4UY8 M;  1NJI J;  3CC4 H;  5GAH N;  3CMA H;  2PA2 A;  3CCS H;  3I56 H;  4WFB J;  3G4S H;  1YIT H;  1VQ7 H;  1VQ6 H;  1VQ4 H;  3CCL H;  1VQP H;  3CCQ H;  3CME H;  4U67 J;  1N8R J;  2ZJP J;  1QVF H;  1KC8 J;  1VQ5 H;  5JVH J;  2ZJR J;  2QEX H;  3CD6 H;  5DM7 J;  5MLC O;  1VQ9 H;  4IOA J;  1K73 J;  4WFA J;  1K8A J;  3PIO J;  2OTL H;  3G6E H;  3CCE H;  1VQ8 H;  3CXC H;  1K9M J;  3CCV H;  1W2B H;  3G71 H;  1YJW H;  1YHQ H;  5GAG N;  1Y69 K;  4IOC J;  2QA4 H;  4IO9 J;  1YI2 H;  5GAE N;  3CC7 H;  5H1S O;  3PIP J;  5GAD N;  3CPW H;  1WKI A;  1VQN H;  3CCU H;  1S72 H;  1KQS H;  3CCM H;  3CCR H;  1VQO H;  1Q82 J;  3CF5 J;  1VQL H;  5DM6 J;  4WCE J;  3CCJ H;  1M1K J;  5HL7 J;  3I55 H;  4WFN J;  1QVG H;  3DLL J;  1M90 J;  2ZJQ J; 
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