2ZJRJ

Refined native structure of the large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
136
structure length
136
Chain Sequence
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Translational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords ribosomal 23S RNA
total genus 19
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2008-03-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 2zjrJ01
1VQ8H 3G4SH 3CCJH 1VQ5H 3G71H 1VQ7H 1M1KJ 3CCVH 3CPWH 3J7ZM 1YHQH 1Q81J 1VQKH 1VQPH 3CCUH 2OTJH 4WFNJ 1YJWH 1Q82J 3I56H 4WCEJ 1K8AJ 5GAHN 1QVFH 3CMAH 3CD6H 1K73J 4U67J 3CC2H 3CCMH 1YIJH 5GADN 3PIOJ 4IOAJ 5GAEN 1M90J 2ZJPJ 4UY8M 1KD1J 5DM7J 5JVGJ 1Q7YJ 1VQLH 4IOCJ 2ZJQJ 1VQNH 1YJ9H 5H1SO 1NJIJ 2ZJRJ 1Q86J 1VQOH 5HL7J 3CCEH 1KQSH 1VQMH 3CXCH 4IO9J 1Y69K 4WFBJ 1VQ6H 3DLLJ 2QEXH 1QVGH 1YJNH 2OTLH 3G6EH 3CF5J 5JVHJ 3OW2H 3CCRH 1VQ9H 3CMEH 5GAGN 1YITH 1W2BH 4WFAJ 1KC8J 2PA2A 3CC7H 1N8RJ 3I55H 5MLCO 3CCSH 3PIPJ 5AN9F 5DM6J 1JJ2H 1VQ4H 2QA4H 1S72H 1K9MJ 4WF9J 1YI2H 1WKIA 3CCQH 3CCLH 3CC4H
chains in the Genus database with same CATH superfamily
4EAFA 3B9JC 1VQ8H 2B7QA 3G4SH 3CCJH 1VQ5H 5AYZA 3RPFA 3G71H 1M1KJ 3AM9A 3CCVH 1VQ7H 2W54B 4C7ZA 3CPWH 1BRWA 3NS1C 3NVZC 3J7ZM 1N60B 1YHQH 1Q81J 1VQKH 1O4UA 1VQPH 3CCUH 1RM6A 2OTJH 4WFNJ 1NVIE 1JROB 2DSJA 5HUOA 3FAHA 3WO0A 1YJWH 1Q82J 1WYGA 3I56H 4WCEJ 1NVJA 1K8AJ 5GAHN 1QVFH 3CMAH 1N5XA 2JBMA 3CD6H 1FM0E 1K73J 4U67J 3CC2H 3PAJA 3CCMH 2W3SB 1YIJH 5GADN 3C2EA 4USAA 5MPOC 3PIOJ 1DGJA 3SR6C 1X1OA 4GA4A 1FO4A 1FFUB 1FMAE 3L4PA 4IOAJ 5GAEN 1M90J 2ZJPJ 4X46A 2WK6A 4UY8M 1KD1J 5DM7J 5JVGJ 1Q7YJ 2WP4A 4US9A 1VQLH 5HULA 4IOCJ 3ETRC 3C2RA 2ZJQJ 4EADA 1QPOA 1OTPA 1N61B 1VQNH 2J0FA 1YTEA 4LHMA 1YJ9H 5H1SO 3NVYC 4GA6A 5EP8A 1NJIJ 2ZJRJ 5AYXA 1Q86J 3H5QA 3EUB4 5HL7J 3TQVA 5EY3A 3CCEH 1VQOH 1KQSH 1VQMH 3CXCH 2I1OA 2W55B 4IO9J 4KWWA 2I14A 3FC4A 1Y69K 4AP8A 1UOUA 5HUPA 3AN1A 2W3RB 2WK5A 1VLBA 4WFBJ 3WO1A 3C2VA 1VQ6H 1YTDA 3C2OA 3DLLJ 2B7PA 2QEXH 1QVGH 1YJNH 1AZYA 2Q5WE 4KWVA 2OTLH 1JRPB 4XR5A 1QPQA 4C7YA 3G6EH 3CF5J 5JVHJ 3OW2H 3CCRH 1YTKA 1VQ9H 3CMEH 3AMZA 5GAGN 1SB3A 1QPRA 1FIQC 4WFAJ 1V97A 1N5WB 1QAPA 1YITH 1W2BH 1VDVA 4US8A 3C2FA 3GNNA 2TPTA 1ZXIB 1SIJA 3L0GA 3WNZA 5AYYA 1KC8J 2PA2A 3CC7H 3NVWC 1N8RJ 3I55H 5MLCO 3CCSH 3NVVC 3PIPJ 3BIIE 4C80A 5AN9F 1N63B 5DM6J 1JJ2H 2QIEA 1N62B 1VQ4H 2E3TA 4I9AA 2QA4H 1S72H 1K9MJ 4YYYA 4WF9J 1YI2H 2B7NA 1WKIA 2OMDA 3NRZC 1FFVB 1QPNA 3VMMA 4YEKA 3CCQH 4ZOHA 3CCLH 3CC4H 4GA5A
chains in the Genus database with same CATH topology
1VQ8H 3G4SH 3CCJH 1VQ5H 3G71H 1VQ7H 1M1KJ 3CCVH 3CPWH 3J7ZM 1YHQH 1Q81J 1VQKH 1VQPH 3CCUH 2OTJH 4WFNJ 1YJWH 1Q82J 3I56H 4WCEJ 1K8AJ 5GAHN 1QVFH 3CMAH 3CD6H 1K73J 4U67J 3CC2H 3CCMH 1YIJH 5GADN 3PIOJ 4IOAJ 5GAEN 1M90J 2ZJPJ 4UY8M 1KD1J 5DM7J 5JVGJ 1Q7YJ 1VQLH 4IOCJ 2ZJQJ 1VQNH 1YJ9H 5H1SO 1NJIJ 2ZJRJ 1Q86J 1VQOH 5HL7J 3CCEH 1KQSH 1VQMH 3CXCH 4IO9J 1Y69K 4WFBJ 1VQ6H 3DLLJ 2QEXH 1QVGH 1YJNH 2OTLH 3G6EH 3CF5J 5JVHJ 3OW2H 3CCRH 1VQ9H 3CMEH 5GAGN 1YITH 1W2BH 4WFAJ 1KC8J 2PA2A 3CC7H 1N8RJ 3I55H 5MLCO 3CCSH 3PIPJ 5AN9F 5DM6J 1JJ2H 1VQ4H 2QA4H 1S72H 1K9MJ 4WF9J 1YI2H 1WKIA 3CCQH 3CCLH 3CC4H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VQ8 H;  3G4S H;  3CCJ H;  1VQ5 H;  3G71 H;  1VQ7 H;  1M1K J;  3CCV H;  3CPW H;  3J7Z M;  1YHQ H;  1Q81 J;  1VQK H;  1VQP H;  3CCU H;  2OTJ H;  4WFN J;  1YJW H;  1Q82 J;  3I56 H;  4WCE J;  1K8A J;  5GAH N;  1QVF H;  3CMA H;  3CD6 H;  1K73 J;  4U67 J;  3CC2 H;  3CCM H;  1YIJ H;  5GAD N;  3PIO J;  4IOA J;  5GAE N;  1M90 J;  2ZJP J;  4UY8 M;  1KD1 J;  5DM7 J;  5JVG J;  1Q7Y J;  1VQL H;  4IOC J;  2ZJQ J;  1VQN H;  1YJ9 H;  5H1S O;  1NJI J;  2ZJR J;  1Q86 J;  1VQO H;  5HL7 J;  3CCE H;  1KQS H;  1VQM H;  3CXC H;  4IO9 J;  1Y69 K;  4WFB J;  1VQ6 H;  3DLL J;  2QEX H;  1QVG H;  1YJN H;  2OTL H;  3G6E H;  3CF5 J;  5JVH J;  3OW2 H;  3CCR H;  1VQ9 H;  3CME H;  5GAG N;  1YIT H;  1W2B H;  4WFA J;  1KC8 J;  2PA2 A;  3CC7 H;  1N8R J;  3I55 H;  5MLC O;  3CCS H;  3PIP J;  5AN9 F;  5DM6 J;  1JJ2 H;  1VQ4 H;  2QA4 H;  1S72 H;  1K9M J;  4WF9 J;  1YI2 H;  1WKI A;  3CCQ H;  3CCL H;  3CC4 H; 
#chains in the Genus database with same CATH topology
 4EAF A;  3B9J C;  1VQ8 H;  2B7Q A;  3G4S H;  3CCJ H;  1VQ5 H;  5AYZ A;  3RPF A;  3G71 H;  1M1K J;  3AM9 A;  3CCV H;  1VQ7 H;  2W54 B;  4C7Z A;  3CPW H;  1BRW A;  3NS1 C;  3NVZ C;  3J7Z M;  1N60 B;  1YHQ H;  1Q81 J;  1VQK H;  1O4U A;  1VQP H;  3CCU H;  1RM6 A;  2OTJ H;  4WFN J;  1NVI E;  1JRO B;  2DSJ A;  5HUO A;  3FAH A;  3WO0 A;  1YJW H;  1Q82 J;  1WYG A;  3I56 H;  4WCE J;  1NVJ A;  1K8A J;  5GAH N;  1QVF H;  3CMA H;  1N5X A;  2JBM A;  3CD6 H;  1FM0 E;  1K73 J;  4U67 J;  3CC2 H;  3PAJ A;  3CCM H;  2W3S B;  1YIJ H;  5GAD N;  3C2E A;  4USA A;  5MPO C;  3PIO J;  1DGJ A;  3SR6 C;  1X1O A;  4GA4 A;  1FO4 A;  1FFU B;  1FMA E;  3L4P A;  4IOA J;  5GAE N;  1M90 J;  2ZJP J;  4X46 A;  2WK6 A;  4UY8 M;  1KD1 J;  5DM7 J;  5JVG J;  1Q7Y J;  2WP4 A;  4US9 A;  1VQL H;  5HUL A;  4IOC J;  3ETR C;  3C2R A;  2ZJQ J;  4EAD A;  1QPO A;  1OTP A;  1N61 B;  1VQN H;  2J0F A;  1YTE A;  4LHM A;  1YJ9 H;  5H1S O;  3NVY C;  4GA6 A;  5EP8 A;  1NJI J;  2ZJR J;  5AYX A;  1Q86 J;  3H5Q A;  3EUB 4;  5HL7 J;  3TQV A;  5EY3 A;  3CCE H;  1VQO H;  1KQS H;  1VQM H;  3CXC H;  2I1O A;  2W55 B;  4IO9 J;  4KWW A;  2I14 A;  3FC4 A;  1Y69 K;  4AP8 A;  1UOU A;  5HUP A;  3AN1 A;  2W3R B;  2WK5 A;  1VLB A;  4WFB J;  3WO1 A;  3C2V A;  1VQ6 H;  1YTD A;  3C2O A;  3DLL J;  2B7P A;  2QEX H;  1QVG H;  1YJN H;  1AZY A;  2Q5W E;  4KWV A;  2OTL H;  1JRP B;  4XR5 A;  1QPQ A;  4C7Y A;  3G6E H;  3CF5 J;  5JVH J;  3OW2 H;  3CCR H;  1YTK A;  1VQ9 H;  3CME H;  3AMZ A;  5GAG N;  1SB3 A;  1QPR A;  1FIQ C;  4WFA J;  1V97 A;  1N5W B;  1QAP A;  1YIT H;  1W2B H;  1VDV A;  4US8 A;  3C2F A;  3GNN A;  2TPT A;  1ZXI B;  1SIJ A;  3L0G A;  3WNZ A;  5AYY A;  1KC8 J;  2PA2 A;  3CC7 H;  3NVW C;  1N8R J;  3I55 H;  5MLC O;  3CCS H;  3NVV C;  3PIP J;  3BII E;  4C80 A;  5AN9 F;  1N63 B;  5DM6 J;  1JJ2 H;  2QIE A;  1N62 B;  1VQ4 H;  2E3T A;  4I9A A;  2QA4 H;  1S72 H;  1K9M J;  4YYY A;  4WF9 J;  1YI2 H;  2B7N A;  1WKI A;  2OMD A;  3NRZ C;  1FFV B;  1QPN A;  3VMM A;  4YEK A;  3CCQ H;  4ZOH A;  3CCL H;  3CC4 H;  4GA5 A; 
#chains in the Genus database with same CATH homology
 1VQ8 H;  3G4S H;  3CCJ H;  1VQ5 H;  3G71 H;  1VQ7 H;  1M1K J;  3CCV H;  3CPW H;  3J7Z M;  1YHQ H;  1Q81 J;  1VQK H;  1VQP H;  3CCU H;  2OTJ H;  4WFN J;  1YJW H;  1Q82 J;  3I56 H;  4WCE J;  1K8A J;  5GAH N;  1QVF H;  3CMA H;  3CD6 H;  1K73 J;  4U67 J;  3CC2 H;  3CCM H;  1YIJ H;  5GAD N;  3PIO J;  4IOA J;  5GAE N;  1M90 J;  2ZJP J;  4UY8 M;  1KD1 J;  5DM7 J;  5JVG J;  1Q7Y J;  1VQL H;  4IOC J;  2ZJQ J;  1VQN H;  1YJ9 H;  5H1S O;  1NJI J;  2ZJR J;  1Q86 J;  1VQO H;  5HL7 J;  3CCE H;  1KQS H;  1VQM H;  3CXC H;  4IO9 J;  1Y69 K;  4WFB J;  1VQ6 H;  3DLL J;  2QEX H;  1QVG H;  1YJN H;  2OTL H;  3G6E H;  3CF5 J;  5JVH J;  3OW2 H;  3CCR H;  1VQ9 H;  3CME H;  5GAG N;  1YIT H;  1W2B H;  4WFA J;  1KC8 J;  2PA2 A;  3CC7 H;  1N8R J;  3I55 H;  5MLC O;  3CCS H;  3PIP J;  5AN9 F;  5DM6 J;  1JJ2 H;  1VQ4 H;  2QA4 H;  1S72 H;  1K9M J;  4WF9 J;  1YI2 H;  1WKI A;  3CCQ H;  3CCL H;  3CC4 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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