3CC7H

Structure of anisomycin resistant 50s ribosomal subunit: 23s rrna mutation c2487u
Total Genus 38
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
171
structure length
160
Chain Sequence
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (6-8)S5 (96-100)EMPTYTI1 (19-22)AH1 (62-80)S1 (35-37)TIV1 (36-39)TIV2 (81-84)3H2 (43-45)TI3 (38-41)AH2 (145-157)S6 (122-130)S2 (48-54)TIV3 (114-117)S3 (58-61)TI4 (142-145)TIV4 (116-119)S4 (87-90)TII1 (131-134)S7 (134-141)O1 (93-95)Updating...
connected with : NaN
molecule tags Ribosome
publication title Mutations outside the anisomycin-binding site can make ribosomes drug-resistant.
pubmed doi rcsb
molecule keywords 50S ribosomal protein L2P
total genus 38
structure length 160
sequence length 171
ec nomenclature
pdb deposition date 2008-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 3cc7H00
4WCEJ 1YJNH 4UY8M 3CD6H 2OTJH 1KQSH 5GAHN 1KC8J 1S72H 3J7ZM 2ZJQJ 1YI2H 1Q81J 3DLLJ 3CMEH 5MLCO 3CC4H 4WF9J 1Q82J 4IOCJ 1VQ8H 1KD1J 5DM6J 3I55H 5GAGN 3PIOJ 4WFBJ 3CPWH 3G4SH 1VQKH 1K73J 5AN9F 3I56H 1WKIA 1VQPH 3G71H 3CCRH 1YITH 3CCSH 1YHQH 5HL7J 4IOAJ 3OW2H 5JVHJ 1M90J 3CCMH 1VQ5H 2QA4H 2ZJPJ 5JVGJ 1VQMH 3CC7H 3CCJH 1VQ6H 3CCUH 1QVGH 5DM7J 3CCEH 5GADN 2OTLH 1VQNH 4WFAJ 1Y69K 3G6EH 1VQLH 1K9MJ 1Q7YJ 1VQ7H 1VQOH 3CCVH 5H1SO 4IO9J 1W2BH 1NJIJ 1YJ9H 1N8RJ 2QEXH 4WFNJ 3CCLH 3PIPJ 1YIJH 1QVFH 5GAEN 3CCQH 2ZJRJ 1YJWH 4U67J 3CC2H 1Q86J 1VQ4H 3CF5J 3CXCH 1K8AJ 1JJ2H 1VQ9H 3CMAH 1M1KJ 2PA2A
chains in the Genus database with same CATH superfamily
4KWWA 2B7QA 5AYYA 4WCEJ 1YJNH 2I1OA 4UY8M 1KQSH 3CD6H 5HULA 4US8A 5GAHN 1SB3A 2OTJH 3WO1A 4EAFA 1N63B 1NVIE 1KC8J 3SR6C 3WNZA 4C7ZA 2DSJA 1S72H 3J7ZM 2ZJQJ 5HUOA 1YI2H 2B7PA 4I9AA 1YTDA 2W55B 1QPRA 3C2OA 3L4PA 1VLBA 1Q81J 3L0GA 3C2EA 3DLLJ 3CMEH 1SIJA 2B7NA 5MLCO 3NVZC 4ZOHA 3CC4H 1DGJA 1RM6A 4XR5A 4WF9J 1N5WB 4IOCJ 1Q82J 1VQ8H 2OMDA 1KD1J 5DM6J 1FO4A 3TQVA 3I55H 3WO0A 3AM9A 5GAGN 2W54B 3PIOJ 4WFBJ 4C80A 3C2VA 3H5QA 3CPWH 1FM0E 5MPOC 1YTEA 3FAHA 1N62B 3NVYC 3ETRC 3G4SH 1VQKH 1K73J 5AN9F 3GNNA 3I56H 1WKIA 3C2FA 1VQPH 5HUPA 3G71H 3CCRH 1YITH 3CCSH 1YHQH 5HL7J 1UOUA 4IOAJ 1QAPA 3PAJA 4EADA 2QIEA 3OW2H 5JVHJ 1ZXIB 4GA5A 1M90J 3CCMH 1VQ5H 2TPTA 1FFUB 1NVJA 2QA4H 2ZJPJ 5JVGJ 4C7YA 1V97A 3AMZA 1VQMH 3CC7H 3B9JC 3CCJH 2WK6A 1QPOA 3BIIE 3NS1C 1VQ6H 1VDVA 4GA6A 3CCUH 1QVGH 1N61B 1QPNA 2I14A 4GA4A 5DM7J 3CCEH 5GADN 2OTLH 1VQNH 1OTPA 1QPQA 4LHMA 4WFAJ 1Y69K 2WK5A 3G6EH 3NRZC 1VQLH 1K9MJ 4US9A 1Q7YJ 1VQ7H 1VQOH 1WYGA 2J0FA 4YEKA 1BRWA 3CCVH 5H1SO 2W3RB 4IO9J 1W2BH 1NJIJ 5AYXA 2Q5WE 1FIQC 1N5XA 1O4UA 2WP4A 2JBMA 4YYYA 1YJ9H 1N8RJ 2QEXH 4WFNJ 4AP8A 1JROB 3CCLH 3NVWC 3PIPJ 5EP8A 1YIJH 5AYZA 3RPFA 1QVFH 4X46A 4KWVA 5GAEN 3FC4A 3VMMA 3NVVC 3CCQH 2W3SB 2ZJRJ 1N60B 1YJWH 4U67J 3EUB4 3AN1A 3CC2H 1Q86J 1VQ4H 3CF5J 1AZYA 3CXCH 2E3TA 3C2RA 5EY3A 4USAA 1K8AJ 1FMAE 1X1OA 1FFVB 1JJ2H 1VQ9H 3CMAH 1M1KJ 1YTKA 2PA2A 1JRPB
chains in the Genus database with same CATH topology
4WCEJ 1YJNH 4UY8M 3CD6H 2OTJH 1KQSH 5GAHN 1KC8J 1S72H 3J7ZM 2ZJQJ 1YI2H 1Q81J 3DLLJ 3CMEH 5MLCO 3CC4H 4WF9J 1Q82J 4IOCJ 1VQ8H 1KD1J 5DM6J 3I55H 5GAGN 3PIOJ 4WFBJ 3CPWH 3G4SH 1VQKH 1K73J 5AN9F 3I56H 1WKIA 1VQPH 3G71H 3CCRH 1YITH 3CCSH 1YHQH 5HL7J 4IOAJ 3OW2H 5JVHJ 1M90J 3CCMH 1VQ5H 2QA4H 2ZJPJ 5JVGJ 1VQMH 3CC7H 3CCJH 1VQ6H 3CCUH 1QVGH 5DM7J 3CCEH 5GADN 2OTLH 1VQNH 4WFAJ 1Y69K 3G6EH 1VQLH 1K9MJ 1Q7YJ 1VQ7H 1VQOH 3CCVH 5H1SO 4IO9J 1W2BH 1NJIJ 1YJ9H 1N8RJ 2QEXH 4WFNJ 3CCLH 3PIPJ 1YIJH 1QVFH 5GAEN 3CCQH 2ZJRJ 1YJWH 4U67J 3CC2H 1Q86J 1VQ4H 3CF5J 3CXCH 1K8AJ 1JJ2H 1VQ9H 3CMAH 1M1KJ 2PA2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WCE J;  1YJN H;  4UY8 M;  3CD6 H;  2OTJ H;  1KQS H;  5GAH N;  1KC8 J;  1S72 H;  3J7Z M;  2ZJQ J;  1YI2 H;  1Q81 J;  3DLL J;  3CME H;  5MLC O;  3CC4 H;  4WF9 J;  1Q82 J;  4IOC J;  1VQ8 H;  1KD1 J;  5DM6 J;  3I55 H;  5GAG N;  3PIO J;  4WFB J;  3CPW H;  3G4S H;  1VQK H;  1K73 J;  5AN9 F;  3I56 H;  1WKI A;  1VQP H;  3G71 H;  3CCR H;  1YIT H;  3CCS H;  1YHQ H;  5HL7 J;  4IOA J;  3OW2 H;  5JVH J;  1M90 J;  3CCM H;  1VQ5 H;  2QA4 H;  2ZJP J;  5JVG J;  1VQM H;  3CC7 H;  3CCJ H;  1VQ6 H;  3CCU H;  1QVG H;  5DM7 J;  3CCE H;  5GAD N;  2OTL H;  1VQN H;  4WFA J;  1Y69 K;  3G6E H;  1VQL H;  1K9M J;  1Q7Y J;  1VQ7 H;  1VQO H;  3CCV H;  5H1S O;  4IO9 J;  1W2B H;  1NJI J;  1YJ9 H;  1N8R J;  2QEX H;  4WFN J;  3CCL H;  3PIP J;  1YIJ H;  1QVF H;  5GAE N;  3CCQ H;  2ZJR J;  1YJW H;  4U67 J;  3CC2 H;  1Q86 J;  1VQ4 H;  3CF5 J;  3CXC H;  1K8A J;  1JJ2 H;  1VQ9 H;  3CMA H;  1M1K J;  2PA2 A; 
#chains in the Genus database with same CATH topology
 4KWW A;  2B7Q A;  5AYY A;  4WCE J;  1YJN H;  2I1O A;  4UY8 M;  1KQS H;  3CD6 H;  5HUL A;  4US8 A;  5GAH N;  1SB3 A;  2OTJ H;  3WO1 A;  4EAF A;  1N63 B;  1NVI E;  1KC8 J;  3SR6 C;  3WNZ A;  4C7Z A;  2DSJ A;  1S72 H;  3J7Z M;  2ZJQ J;  5HUO A;  1YI2 H;  2B7P A;  4I9A A;  1YTD A;  2W55 B;  1QPR A;  3C2O A;  3L4P A;  1VLB A;  1Q81 J;  3L0G A;  3C2E A;  3DLL J;  3CME H;  1SIJ A;  2B7N A;  5MLC O;  3NVZ C;  4ZOH A;  3CC4 H;  1DGJ A;  1RM6 A;  4XR5 A;  4WF9 J;  1N5W B;  4IOC J;  1Q82 J;  1VQ8 H;  2OMD A;  1KD1 J;  5DM6 J;  1FO4 A;  3TQV A;  3I55 H;  3WO0 A;  3AM9 A;  5GAG N;  2W54 B;  3PIO J;  4WFB J;  4C80 A;  3C2V A;  3H5Q A;  3CPW H;  1FM0 E;  5MPO C;  1YTE A;  3FAH A;  1N62 B;  3NVY C;  3ETR C;  3G4S H;  1VQK H;  1K73 J;  5AN9 F;  3GNN A;  3I56 H;  1WKI A;  3C2F A;  1VQP H;  5HUP A;  3G71 H;  3CCR H;  1YIT H;  3CCS H;  1YHQ H;  5HL7 J;  1UOU A;  4IOA J;  1QAP A;  3PAJ A;  4EAD A;  2QIE A;  3OW2 H;  5JVH J;  1ZXI B;  4GA5 A;  1M90 J;  3CCM H;  1VQ5 H;  2TPT A;  1FFU B;  1NVJ A;  2QA4 H;  2ZJP J;  5JVG J;  4C7Y A;  1V97 A;  3AMZ A;  1VQM H;  3CC7 H;  3B9J C;  3CCJ H;  2WK6 A;  1QPO A;  3BII E;  3NS1 C;  1VQ6 H;  1VDV A;  4GA6 A;  3CCU H;  1QVG H;  1N61 B;  1QPN A;  2I14 A;  4GA4 A;  5DM7 J;  3CCE H;  5GAD N;  2OTL H;  1VQN H;  1OTP A;  1QPQ A;  4LHM A;  4WFA J;  1Y69 K;  2WK5 A;  3G6E H;  3NRZ C;  1VQL H;  1K9M J;  4US9 A;  1Q7Y J;  1VQ7 H;  1VQO H;  1WYG A;  2J0F A;  4YEK A;  1BRW A;  3CCV H;  5H1S O;  2W3R B;  4IO9 J;  1W2B H;  1NJI J;  5AYX A;  2Q5W E;  1FIQ C;  1N5X A;  1O4U A;  2WP4 A;  2JBM A;  4YYY A;  1YJ9 H;  1N8R J;  2QEX H;  4WFN J;  4AP8 A;  1JRO B;  3CCL H;  3NVW C;  3PIP J;  5EP8 A;  1YIJ H;  5AYZ A;  3RPF A;  1QVF H;  4X46 A;  4KWV A;  5GAE N;  3FC4 A;  3VMM A;  3NVV C;  3CCQ H;  2W3S B;  2ZJR J;  1N60 B;  1YJW H;  4U67 J;  3EUB 4;  3AN1 A;  3CC2 H;  1Q86 J;  1VQ4 H;  3CF5 J;  1AZY A;  3CXC H;  2E3T A;  3C2R A;  5EY3 A;  4USA A;  1K8A J;  1FMA E;  1X1O A;  1FFV B;  1JJ2 H;  1VQ9 H;  3CMA H;  1M1K J;  1YTK A;  2PA2 A;  1JRP B; 
#chains in the Genus database with same CATH homology
 4WCE J;  1YJN H;  4UY8 M;  3CD6 H;  2OTJ H;  1KQS H;  5GAH N;  1KC8 J;  1S72 H;  3J7Z M;  2ZJQ J;  1YI2 H;  1Q81 J;  3DLL J;  3CME H;  5MLC O;  3CC4 H;  4WF9 J;  1Q82 J;  4IOC J;  1VQ8 H;  1KD1 J;  5DM6 J;  3I55 H;  5GAG N;  3PIO J;  4WFB J;  3CPW H;  3G4S H;  1VQK H;  1K73 J;  5AN9 F;  3I56 H;  1WKI A;  1VQP H;  3G71 H;  3CCR H;  1YIT H;  3CCS H;  1YHQ H;  5HL7 J;  4IOA J;  3OW2 H;  5JVH J;  1M90 J;  3CCM H;  1VQ5 H;  2QA4 H;  2ZJP J;  5JVG J;  1VQM H;  3CC7 H;  3CCJ H;  1VQ6 H;  3CCU H;  1QVG H;  5DM7 J;  3CCE H;  5GAD N;  2OTL H;  1VQN H;  4WFA J;  1Y69 K;  3G6E H;  1VQL H;  1K9M J;  1Q7Y J;  1VQ7 H;  1VQO H;  3CCV H;  5H1S O;  4IO9 J;  1W2B H;  1NJI J;  1YJ9 H;  1N8R J;  2QEX H;  4WFN J;  3CCL H;  3PIP J;  1YIJ H;  1QVF H;  5GAE N;  3CCQ H;  2ZJR J;  1YJW H;  4U67 J;  3CC2 H;  1Q86 J;  1VQ4 H;  3CF5 J;  3CXC H;  1K8A J;  1JJ2 H;  1VQ9 H;  3CMA H;  1M1K J;  2PA2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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