3J7ZM

Structure of the e. coli 50s subunit with ermcl nascent chain
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
136
structure length
136
Chain Sequence
MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Drug Sensing by the Ribosome Induces Translational Arrest via Active Site Perturbation.
pubmed doi rcsb
molecule tags Ribosome/antibiotic
molecule keywords 50S ribosomal protein L32
total genus 24
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2014-08-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 3j7zM01
1Q7YJ 4IOAJ 3CCQH 3J7ZM 3CC7H 1YHQH 2QA4H 4UY8M 5MLCO 1QVFH 4WFBJ 4WCEJ 1Q86J 3CD6H 3CPWH 3G4SH 3CCUH 3PIOJ 1Q82J 1N8RJ 5GAGN 1YJ9H 1VQMH 3CCRH 1VQ6H 2OTLH 1VQLH 1WKIA 1VQOH 1K9MJ 1VQ4H 3CCLH 5JVGJ 1VQKH 5AN9F 1YITH 5JVHJ 3CF5J 1VQPH 3CCJH 4IOCJ 1Y69K 3CCMH 5GAHN 5HL7J 2QEXH 1YJWH 2ZJRJ 1YIJH 3G6EH 5GAEN 1YI2H 4WF9J 2OTJH 4IO9J 1M1KJ 3DLLJ 4WFAJ 2ZJPJ 3PIPJ 1JJ2H 3CMAH 3CC2H 1YJNH 1VQ9H 3CC4H 2PA2A 3CXCH 3CMEH 3OW2H 2ZJQJ 1VQ5H 1NJIJ 1KC8J 1VQ7H 1QVGH 1KQSH 1VQNH 1KD1J 5DM6J 4U67J 3CCVH 1VQ8H 3I56H 3G71H 1K73J 1K8AJ 5H1SO 1S72H 1M90J 5GADN 3CCSH 1W2BH 4WFNJ 3CCEH 1Q81J 3I55H 5DM7J
chains in the Genus database with same CATH superfamily
1Q7YJ 3EUB4 1WYGA 1ZXIB 2W3SB 3CCQH 3J7ZM 4IOAJ 2DSJA 3CC7H 1N5WB 4XR5A 1UOUA 1YHQH 2QA4H 4UY8M 1QPOA 5MLCO 1QVFH 4WFBJ 2W55B 3RPFA 4WCEJ 1Q86J 3CD6H 5AYZA 3AM9A 3CPWH 4C7ZA 3G4SH 1X1OA 3CCUH 3NRZC 2QIEA 3PIOJ 3L0GA 1Q82J 2B7NA 1N8RJ 5GAGN 1QPRA 5EY3A 1YJ9H 1VQMH 3CCRH 3NVZC 5EP8A 1VQ6H 2OTLH 1VQLH 2W54B 1N5XA 1V97A 3C2OA 1SB3A 1N62B 1WKIA 1YTEA 3WO0A 1VQOH 2WK6A 5DM7J 1K9MJ 1VQ4H 3CCLH 5JVGJ 3TQVA 3PAJA 5AYYA 1NVJA 5HUOA 1VQKH 3C2VA 1FIQC 5AN9F 1YITH 1JROB 5JVHJ 1FO4A 1N63B 4X46A 3CF5J 3NVVC 4US9A 1OTPA 3C2RA 4LHMA 3NS1C 1FFVB 3AN1A 1VQPH 1VLBA 3CCJH 1RM6A 2I14A 3SR6C 4GA4A 3B9JC 4IOCJ 1Y69K 2OMDA 4AP8A 3CCMH 1FMAE 4YEKA 5GAHN 2I1OA 4EAFA 5HL7J 2QEXH 4GA6A 1YJWH 2ZJRJ 4KWVA 4YYYA 4C80A 2E3TA 3FAHA 1YIJH 2WK5A 3G6EH 5GAEN 4KWWA 3H5QA 1N60B 1YI2H 2B7QA 4ZOHA 2Q5WE 5HULA 4WF9J 1N61B 1DGJA 1YTDA 2J0FA 1BRWA 2OTJH 4IO9J 1M1KJ 1VDVA 3DLLJ 4WFAJ 3NVYC 2ZJPJ 1AZYA 3PIPJ 3GNNA 5AYXA 4C7YA 1JJ2H 3CMAH 3CC2H 1YJNH 1QPQA 1VQ9H 3CC4H 2PA2A 4US8A 3ETRC 3CXCH 3C2FA 3CMEH 1SIJA 3VMMA 3L4PA 3OW2H 2ZJQJ 1VQ5H 3BIIE 2W3RB 1NJIJ 1KC8J 2JBMA 3C2EA 1VQ7H 2WP4A 1QVGH 1KQSH 1YTKA 1VQNH 1KD1J 3AMZA 5DM6J 3NVWC 4U67J 3CCVH 1VQ8H 5MPOC 1FFUB 1QPNA 3WNZA 4USAA 3I56H 3G71H 1K73J 1K8AJ 5H1SO 1O4UA 5HUPA 4EADA 1S72H 1M90J 2B7PA 1NVIE 1FM0E 3FC4A 5GADN 3CCSH 1W2BH 4WFNJ 3CCEH 1Q81J 4GA5A 3WO1A 2TPTA 1JRPB 3I55H 4I9AA 1QAPA
chains in the Genus database with same CATH topology
1Q7YJ 4IOAJ 3CCQH 3J7ZM 3CC7H 1YHQH 2QA4H 4UY8M 5MLCO 1QVFH 4WFBJ 4WCEJ 1Q86J 3CD6H 3CPWH 3G4SH 3CCUH 3PIOJ 1Q82J 1N8RJ 5GAGN 1YJ9H 1VQMH 3CCRH 1VQ6H 2OTLH 1VQLH 1WKIA 1VQOH 1K9MJ 1VQ4H 3CCLH 5JVGJ 1VQKH 5AN9F 1YITH 5JVHJ 3CF5J 1VQPH 3CCJH 4IOCJ 1Y69K 3CCMH 5GAHN 5HL7J 2QEXH 1YJWH 2ZJRJ 1YIJH 3G6EH 5GAEN 1YI2H 4WF9J 2OTJH 4IO9J 1M1KJ 3DLLJ 4WFAJ 2ZJPJ 3PIPJ 1JJ2H 3CMAH 3CC2H 1YJNH 1VQ9H 3CC4H 2PA2A 3CXCH 3CMEH 3OW2H 2ZJQJ 1VQ5H 1NJIJ 1KC8J 1VQ7H 1QVGH 1KQSH 1VQNH 1KD1J 5DM6J 4U67J 3CCVH 1VQ8H 3I56H 3G71H 1K73J 1K8AJ 5H1SO 1S72H 1M90J 5GADN 3CCSH 1W2BH 4WFNJ 3CCEH 1Q81J 3I55H 5DM7J
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q7Y J;  4IOA J;  3CCQ H;  3J7Z M;  3CC7 H;  1YHQ H;  2QA4 H;  4UY8 M;  5MLC O;  1QVF H;  4WFB J;  4WCE J;  1Q86 J;  3CD6 H;  3CPW H;  3G4S H;  3CCU H;  3PIO J;  1Q82 J;  1N8R J;  5GAG N;  1YJ9 H;  1VQM H;  3CCR H;  1VQ6 H;  2OTL H;  1VQL H;  1WKI A;  1VQO H;  1K9M J;  1VQ4 H;  3CCL H;  5JVG J;  1VQK H;  5AN9 F;  1YIT H;  5JVH J;  3CF5 J;  1VQP H;  3CCJ H;  4IOC J;  1Y69 K;  3CCM H;  5GAH N;  5HL7 J;  2QEX H;  1YJW H;  2ZJR J;  1YIJ H;  3G6E H;  5GAE N;  1YI2 H;  4WF9 J;  2OTJ H;  4IO9 J;  1M1K J;  3DLL J;  4WFA J;  2ZJP J;  3PIP J;  1JJ2 H;  3CMA H;  3CC2 H;  1YJN H;  1VQ9 H;  3CC4 H;  2PA2 A;  3CXC H;  3CME H;  3OW2 H;  2ZJQ J;  1VQ5 H;  1NJI J;  1KC8 J;  1VQ7 H;  1QVG H;  1KQS H;  1VQN H;  1KD1 J;  5DM6 J;  4U67 J;  3CCV H;  1VQ8 H;  3I56 H;  3G71 H;  1K73 J;  1K8A J;  5H1S O;  1S72 H;  1M90 J;  5GAD N;  3CCS H;  1W2B H;  4WFN J;  3CCE H;  1Q81 J;  3I55 H;  5DM7 J; 
#chains in the Genus database with same CATH topology
 1Q7Y J;  3EUB 4;  1WYG A;  1ZXI B;  2W3S B;  3CCQ H;  3J7Z M;  4IOA J;  2DSJ A;  3CC7 H;  1N5W B;  4XR5 A;  1UOU A;  1YHQ H;  2QA4 H;  4UY8 M;  1QPO A;  5MLC O;  1QVF H;  4WFB J;  2W55 B;  3RPF A;  4WCE J;  1Q86 J;  3CD6 H;  5AYZ A;  3AM9 A;  3CPW H;  4C7Z A;  3G4S H;  1X1O A;  3CCU H;  3NRZ C;  2QIE A;  3PIO J;  3L0G A;  1Q82 J;  2B7N A;  1N8R J;  5GAG N;  1QPR A;  5EY3 A;  1YJ9 H;  1VQM H;  3CCR H;  3NVZ C;  5EP8 A;  1VQ6 H;  2OTL H;  1VQL H;  2W54 B;  1N5X A;  1V97 A;  3C2O A;  1SB3 A;  1N62 B;  1WKI A;  1YTE A;  3WO0 A;  1VQO H;  2WK6 A;  5DM7 J;  1K9M J;  1VQ4 H;  3CCL H;  5JVG J;  3TQV A;  3PAJ A;  5AYY A;  1NVJ A;  5HUO A;  1VQK H;  3C2V A;  1FIQ C;  5AN9 F;  1YIT H;  1JRO B;  5JVH J;  1FO4 A;  1N63 B;  4X46 A;  3CF5 J;  3NVV C;  4US9 A;  1OTP A;  3C2R A;  4LHM A;  3NS1 C;  1FFV B;  3AN1 A;  1VQP H;  1VLB A;  3CCJ H;  1RM6 A;  2I14 A;  3SR6 C;  4GA4 A;  3B9J C;  4IOC J;  1Y69 K;  2OMD A;  4AP8 A;  3CCM H;  1FMA E;  4YEK A;  5GAH N;  2I1O A;  4EAF A;  5HL7 J;  2QEX H;  4GA6 A;  1YJW H;  2ZJR J;  4KWV A;  4YYY A;  4C80 A;  2E3T A;  3FAH A;  1YIJ H;  2WK5 A;  3G6E H;  5GAE N;  4KWW A;  3H5Q A;  1N60 B;  1YI2 H;  2B7Q A;  4ZOH A;  2Q5W E;  5HUL A;  4WF9 J;  1N61 B;  1DGJ A;  1YTD A;  2J0F A;  1BRW A;  2OTJ H;  4IO9 J;  1M1K J;  1VDV A;  3DLL J;  4WFA J;  3NVY C;  2ZJP J;  1AZY A;  3PIP J;  3GNN A;  5AYX A;  4C7Y A;  1JJ2 H;  3CMA H;  3CC2 H;  1YJN H;  1QPQ A;  1VQ9 H;  3CC4 H;  2PA2 A;  4US8 A;  3ETR C;  3CXC H;  3C2F A;  3CME H;  1SIJ A;  3VMM A;  3L4P A;  3OW2 H;  2ZJQ J;  1VQ5 H;  3BII E;  2W3R B;  1NJI J;  1KC8 J;  2JBM A;  3C2E A;  1VQ7 H;  2WP4 A;  1QVG H;  1KQS H;  1YTK A;  1VQN H;  1KD1 J;  3AMZ A;  5DM6 J;  3NVW C;  4U67 J;  3CCV H;  1VQ8 H;  5MPO C;  1FFU B;  1QPN A;  3WNZ A;  4USA A;  3I56 H;  3G71 H;  1K73 J;  1K8A J;  5H1S O;  1O4U A;  5HUP A;  4EAD A;  1S72 H;  1M90 J;  2B7P A;  1NVI E;  1FM0 E;  3FC4 A;  5GAD N;  3CCS H;  1W2B H;  4WFN J;  3CCE H;  1Q81 J;  4GA5 A;  3WO1 A;  2TPT A;  1JRP B;  3I55 H;  4I9A A;  1QAP A; 
#chains in the Genus database with same CATH homology
 1Q7Y J;  4IOA J;  3CCQ H;  3J7Z M;  3CC7 H;  1YHQ H;  2QA4 H;  4UY8 M;  5MLC O;  1QVF H;  4WFB J;  4WCE J;  1Q86 J;  3CD6 H;  3CPW H;  3G4S H;  3CCU H;  3PIO J;  1Q82 J;  1N8R J;  5GAG N;  1YJ9 H;  1VQM H;  3CCR H;  1VQ6 H;  2OTL H;  1VQL H;  1WKI A;  1VQO H;  1K9M J;  1VQ4 H;  3CCL H;  5JVG J;  1VQK H;  5AN9 F;  1YIT H;  5JVH J;  3CF5 J;  1VQP H;  3CCJ H;  4IOC J;  1Y69 K;  3CCM H;  5GAH N;  5HL7 J;  2QEX H;  1YJW H;  2ZJR J;  1YIJ H;  3G6E H;  5GAE N;  1YI2 H;  4WF9 J;  2OTJ H;  4IO9 J;  1M1K J;  3DLL J;  4WFA J;  2ZJP J;  3PIP J;  1JJ2 H;  3CMA H;  3CC2 H;  1YJN H;  1VQ9 H;  3CC4 H;  2PA2 A;  3CXC H;  3CME H;  3OW2 H;  2ZJQ J;  1VQ5 H;  1NJI J;  1KC8 J;  1VQ7 H;  1QVG H;  1KQS H;  1VQN H;  1KD1 J;  5DM6 J;  4U67 J;  3CCV H;  1VQ8 H;  3I56 H;  3G71 H;  1K73 J;  1K8A J;  5H1S O;  1S72 H;  1M90 J;  5GAD N;  3CCS H;  1W2B H;  4WFN J;  3CCE H;  1Q81 J;  3I55 H;  5DM7 J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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