4IO9J

Crystal structure of compound 4d bound to large ribosomal subunit (50s) from deinococcus radiodurans
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
136
structure length
136
Chain Sequence
KRTKFRKQFRGRMTGDAKGGDYVAFGDYGLIAMEPAWIKSNQIEACRIVMSRHFRRGGKIYIRIFPDKPVTKKPAETRMGKGKGAVEYWVSVVKPGRVMFEVAGVTEEQAKEAFRLAGHKLPIQTKMVKREVYDEA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS3 (65-67)S6 (102-107)TIV2 (28-31)S1 (33-37)S5 (89-98)AH1 (45-59)AH2 (112-124)TIV3 (59-62)TIV5 (99-102)O1 (63-65)S2 (41-44)O2 (70-72)Updating...
connected with : NaN
molecule tags Ribosome/ribosome inhibitor
publication title Novel 3-O-carbamoyl erythromycin A derivatives (carbamolides) with activity against resistant staphylococcal and streptococcal isolates.
pubmed doi rcsb
molecule keywords 23S ribosomal RNA
total genus 22
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2013-01-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 4io9J01
3CCLH 3PIOJ 3CXCH 1QVFH 1VQ8H 3CCRH 1Y69K 1N8RJ 1VQPH 5HL7J 5DM7J 1W2BH 1JJ2H 3CPWH 1S72H 2PA2A 4WFBJ 3CC2H 2ZJPJ 3CMAH 5GADN 3G71H 3CC4H 1YIJH 1VQ9H 1YJNH 3PIPJ 2ZJQJ 5GAGN 5DM6J 3I55H 4IOCJ 3G6EH 1KQSH 4UY8M 1Q86J 5AN9F 3CCEH 1VQKH 1VQNH 1VQMH 4IOAJ 4WF9J 2ZJRJ 1KC8J 3CF5J 4WFAJ 1M1KJ 3G4SH 1KD1J 3CD6H 1YITH 5JVGJ 3DLLJ 1Q82J 1VQ7H 4U67J 1K9MJ 1NJIJ 1K73J 1VQLH 1Q81J 3CMEH 1K8AJ 3J7ZM 1WKIA 3CCMH 3OW2H 1VQ4H 1M90J 2QA4H 1YJWH 1YJ9H 3CCVH 2OTLH 1YI2H 5JVHJ 1QVGH 5GAHN 5H1SO 3CCJH 2OTJH 1VQOH 4WCEJ 2QEXH 4WFNJ 3I56H 1VQ5H 5MLCO 4IO9J 3CCSH 1VQ6H 3CCQH 5GAEN 1YHQH 3CCUH 1Q7YJ 3CC7H
chains in the Genus database with same CATH superfamily
3BIIE 3CCLH 4XR5A 3PIOJ 3RPFA 1QAPA 5AYZA 3CXCH 1QVFH 1VQ8H 3L0GA 3CCRH 3AMZA 1SB3A 1Y69K 3C2FA 4USAA 1QPOA 1VDVA 5EP8A 4US9A 1N8RJ 1BRWA 1YTEA 4EADA 2J0FA 1VQPH 5HL7J 5DM7J 4YYYA 1W2BH 1JJ2H 4EAFA 4GA6A 2WP4A 3GNNA 3B9JC 3SR6C 4US8A 3CPWH 5AYXA 1S72H 1N5XA 2PA2A 3ETRC 3NVVC 4WFBJ 3CC2H 2QIEA 2ZJPJ 1X1OA 1RM6A 4C7YA 3CMAH 2B7QA 4I9AA 5GADN 1JRPB 5MPOC 2B7NA 1WYGA 3G71H 3CC4H 1YIJH 1VQ9H 4GA5A 1YJNH 3L4PA 3NVWC 1FO4A 3PAJA 1JROB 1QPQA 3PIPJ 2ZJQJ 4AP8A 1FFVB 5GAGN 5DM6J 2E3TA 1ZXIB 3I55H 1AZYA 4IOCJ 3G6EH 3C2VA 3WO0A 1KQSH 4UY8M 5AYYA 2W54B 1Q86J 1FM0E 5AN9F 1FFUB 3WNZA 1QPRA 1O4UA 3CCEH 1VQKH 1NVJA 2I14A 1VQMH 4WF9J 2ZJRJ 1VQNH 1KC8J 4IOAJ 2DSJA 1FMAE 1QPNA 3CF5J 4KWWA 1NVIE 5HUPA 4WFAJ 1M1KJ 3G4SH 4X46A 1KD1J 4YEKA 3CD6H 1YITH 3NVYC 3AN1A 3NVZC 2W3SB 2Q5WE 5JVGJ 3H5QA 3DLLJ 3AM9A 1SIJA 1Q82J 1VQ7H 1DGJA 4U67J 1K9MJ 1YTKA 1NJIJ 2WK5A 4C80A 5EY3A 1K73J 1VQLH 1Q81J 1N61B 3CMEH 2WK6A 3EUB4 1YTDA 1K8AJ 3J7ZM 3VMMA 1WKIA 3CCMH 1OTPA 3OW2H 1VQ4H 1M90J 2QA4H 1YJWH 1N60B 3FAHA 1YJ9H 1VLBA 3NRZC 2OMDA 1N63B 3NS1C 3CCVH 2OTLH 1YI2H 5JVHJ 1QVGH 2W55B 4LHMA 3WO1A 5GAHN 2TPTA 1FIQC 5H1SO 3TQVA 3CCJH 1N5WB 1VQOH 2OTJH 4WCEJ 2QEXH 3C2EA 5HUOA 1V97A 4KWVA 4WFNJ 2W3RB 4GA4A 4ZOHA 3I56H 4C7ZA 1VQ5H 5MLCO 2I1OA 2B7PA 3C2RA 4IO9J 1UOUA 3C2OA 3CCSH 1VQ6H 1N62B 5HULA 5GAEN 3CCQH 3FC4A 2JBMA 3CCUH 1YHQH 1Q7YJ 3CC7H
chains in the Genus database with same CATH topology
3CCLH 3PIOJ 3CXCH 1QVFH 1VQ8H 3CCRH 1Y69K 1N8RJ 1VQPH 5HL7J 5DM7J 1W2BH 1JJ2H 3CPWH 1S72H 2PA2A 4WFBJ 3CC2H 2ZJPJ 3CMAH 5GADN 3G71H 3CC4H 1YIJH 1VQ9H 1YJNH 3PIPJ 2ZJQJ 5GAGN 5DM6J 3I55H 4IOCJ 3G6EH 1KQSH 4UY8M 1Q86J 5AN9F 3CCEH 1VQKH 1VQNH 1VQMH 4IOAJ 4WF9J 2ZJRJ 1KC8J 3CF5J 4WFAJ 1M1KJ 3G4SH 1KD1J 3CD6H 1YITH 5JVGJ 3DLLJ 1Q82J 1VQ7H 4U67J 1K9MJ 1NJIJ 1K73J 1VQLH 1Q81J 3CMEH 1K8AJ 3J7ZM 1WKIA 3CCMH 3OW2H 1VQ4H 1M90J 2QA4H 1YJWH 1YJ9H 3CCVH 2OTLH 1YI2H 5JVHJ 1QVGH 5GAHN 5H1SO 3CCJH 2OTJH 1VQOH 4WCEJ 2QEXH 4WFNJ 3I56H 1VQ5H 5MLCO 4IO9J 3CCSH 1VQ6H 3CCQH 5GAEN 1YHQH 3CCUH 1Q7YJ 3CC7H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CCL H;  3PIO J;  3CXC H;  1QVF H;  1VQ8 H;  3CCR H;  1Y69 K;  1N8R J;  1VQP H;  5HL7 J;  5DM7 J;  1W2B H;  1JJ2 H;  3CPW H;  1S72 H;  2PA2 A;  4WFB J;  3CC2 H;  2ZJP J;  3CMA H;  5GAD N;  3G71 H;  3CC4 H;  1YIJ H;  1VQ9 H;  1YJN H;  3PIP J;  2ZJQ J;  5GAG N;  5DM6 J;  3I55 H;  4IOC J;  3G6E H;  1KQS H;  4UY8 M;  1Q86 J;  5AN9 F;  3CCE H;  1VQK H;  1VQN H;  1VQM H;  4IOA J;  4WF9 J;  2ZJR J;  1KC8 J;  3CF5 J;  4WFA J;  1M1K J;  3G4S H;  1KD1 J;  3CD6 H;  1YIT H;  5JVG J;  3DLL J;  1Q82 J;  1VQ7 H;  4U67 J;  1K9M J;  1NJI J;  1K73 J;  1VQL H;  1Q81 J;  3CME H;  1K8A J;  3J7Z M;  1WKI A;  3CCM H;  3OW2 H;  1VQ4 H;  1M90 J;  2QA4 H;  1YJW H;  1YJ9 H;  3CCV H;  2OTL H;  1YI2 H;  5JVH J;  1QVG H;  5GAH N;  5H1S O;  3CCJ H;  2OTJ H;  1VQO H;  4WCE J;  2QEX H;  4WFN J;  3I56 H;  1VQ5 H;  5MLC O;  4IO9 J;  3CCS H;  1VQ6 H;  3CCQ H;  5GAE N;  1YHQ H;  3CCU H;  1Q7Y J;  3CC7 H; 
#chains in the Genus database with same CATH topology
 3BII E;  3CCL H;  4XR5 A;  3PIO J;  3RPF A;  1QAP A;  5AYZ A;  3CXC H;  1QVF H;  1VQ8 H;  3L0G A;  3CCR H;  3AMZ A;  1SB3 A;  1Y69 K;  3C2F A;  4USA A;  1QPO A;  1VDV A;  5EP8 A;  4US9 A;  1N8R J;  1BRW A;  1YTE A;  4EAD A;  2J0F A;  1VQP H;  5HL7 J;  5DM7 J;  4YYY A;  1W2B H;  1JJ2 H;  4EAF A;  4GA6 A;  2WP4 A;  3GNN A;  3B9J C;  3SR6 C;  4US8 A;  3CPW H;  5AYX A;  1S72 H;  1N5X A;  2PA2 A;  3ETR C;  3NVV C;  4WFB J;  3CC2 H;  2QIE A;  2ZJP J;  1X1O A;  1RM6 A;  4C7Y A;  3CMA H;  2B7Q A;  4I9A A;  5GAD N;  1JRP B;  5MPO C;  2B7N A;  1WYG A;  3G71 H;  3CC4 H;  1YIJ H;  1VQ9 H;  4GA5 A;  1YJN H;  3L4P A;  3NVW C;  1FO4 A;  3PAJ A;  1JRO B;  1QPQ A;  3PIP J;  2ZJQ J;  4AP8 A;  1FFV B;  5GAG N;  5DM6 J;  2E3T A;  1ZXI B;  3I55 H;  1AZY A;  4IOC J;  3G6E H;  3C2V A;  3WO0 A;  1KQS H;  4UY8 M;  5AYY A;  2W54 B;  1Q86 J;  1FM0 E;  5AN9 F;  1FFU B;  3WNZ A;  1QPR A;  1O4U A;  3CCE H;  1VQK H;  1NVJ A;  2I14 A;  1VQM H;  4WF9 J;  2ZJR J;  1VQN H;  1KC8 J;  4IOA J;  2DSJ A;  1FMA E;  1QPN A;  3CF5 J;  4KWW A;  1NVI E;  5HUP A;  4WFA J;  1M1K J;  3G4S H;  4X46 A;  1KD1 J;  4YEK A;  3CD6 H;  1YIT H;  3NVY C;  3AN1 A;  3NVZ C;  2W3S B;  2Q5W E;  5JVG J;  3H5Q A;  3DLL J;  3AM9 A;  1SIJ A;  1Q82 J;  1VQ7 H;  1DGJ A;  4U67 J;  1K9M J;  1YTK A;  1NJI J;  2WK5 A;  4C80 A;  5EY3 A;  1K73 J;  1VQL H;  1Q81 J;  1N61 B;  3CME H;  2WK6 A;  3EUB 4;  1YTD A;  1K8A J;  3J7Z M;  3VMM A;  1WKI A;  3CCM H;  1OTP A;  3OW2 H;  1VQ4 H;  1M90 J;  2QA4 H;  1YJW H;  1N60 B;  3FAH A;  1YJ9 H;  1VLB A;  3NRZ C;  2OMD A;  1N63 B;  3NS1 C;  3CCV H;  2OTL H;  1YI2 H;  5JVH J;  1QVG H;  2W55 B;  4LHM A;  3WO1 A;  5GAH N;  2TPT A;  1FIQ C;  5H1S O;  3TQV A;  3CCJ H;  1N5W B;  1VQO H;  2OTJ H;  4WCE J;  2QEX H;  3C2E A;  5HUO A;  1V97 A;  4KWV A;  4WFN J;  2W3R B;  4GA4 A;  4ZOH A;  3I56 H;  4C7Z A;  1VQ5 H;  5MLC O;  2I1O A;  2B7P A;  3C2R A;  4IO9 J;  1UOU A;  3C2O A;  3CCS H;  1VQ6 H;  1N62 B;  5HUL A;  5GAE N;  3CCQ H;  3FC4 A;  2JBM A;  3CCU H;  1YHQ H;  1Q7Y J;  3CC7 H; 
#chains in the Genus database with same CATH homology
 3CCL H;  3PIO J;  3CXC H;  1QVF H;  1VQ8 H;  3CCR H;  1Y69 K;  1N8R J;  1VQP H;  5HL7 J;  5DM7 J;  1W2B H;  1JJ2 H;  3CPW H;  1S72 H;  2PA2 A;  4WFB J;  3CC2 H;  2ZJP J;  3CMA H;  5GAD N;  3G71 H;  3CC4 H;  1YIJ H;  1VQ9 H;  1YJN H;  3PIP J;  2ZJQ J;  5GAG N;  5DM6 J;  3I55 H;  4IOC J;  3G6E H;  1KQS H;  4UY8 M;  1Q86 J;  5AN9 F;  3CCE H;  1VQK H;  1VQN H;  1VQM H;  4IOA J;  4WF9 J;  2ZJR J;  1KC8 J;  3CF5 J;  4WFA J;  1M1K J;  3G4S H;  1KD1 J;  3CD6 H;  1YIT H;  5JVG J;  3DLL J;  1Q82 J;  1VQ7 H;  4U67 J;  1K9M J;  1NJI J;  1K73 J;  1VQL H;  1Q81 J;  3CME H;  1K8A J;  3J7Z M;  1WKI A;  3CCM H;  3OW2 H;  1VQ4 H;  1M90 J;  2QA4 H;  1YJW H;  1YJ9 H;  3CCV H;  2OTL H;  1YI2 H;  5JVH J;  1QVG H;  5GAH N;  5H1S O;  3CCJ H;  2OTJ H;  1VQO H;  4WCE J;  2QEX H;  4WFN J;  3I56 H;  1VQ5 H;  5MLC O;  4IO9 J;  3CCS H;  1VQ6 H;  3CCQ H;  5GAE N;  1YHQ H;  3CCU H;  1Q7Y J;  3CC7 H; 
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