4WFBJ

The crystal structure of the large ribosomal subunit of staphylococcus aureus in complex with bc-3205
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
136
structure length
136
Chain Sequence
MLLPKRVKYRRQHRPKTTGRSKGGNYVTFGEFGLQATTTSWITSRQIESARIAMTRYMKRGGKVWIKIFPHTPYTKKPLEVRMGAGKGAVEGWIAVVKPGRILFEVAGVSEEVAREALRLASHKLPVKTKFVKREE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (44-57)TIV1 (3-6)EMPTYS6 (102-106)TIV2 (27-30)S1 (32-35)TII1 (98-101)O1 (59-61)S3 (64-66)S2 (40-43)S5 (90-97)S4 (72-75)AH2 (114-124)Updating...
connected with : NaN
molecule tags Ribosome
publication title Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.
pubmed doi rcsb
molecule keywords 23S rRNA
total genus 19
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2014-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
J PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 4wfbJ01
2PA2A 3CCSH 1YITH 3PIPJ 1NJIJ 1M90J 4UY8M 3I55H 4IO9J 5DM6J 4WF9J 2OTJH 1N8RJ 3CPWH 3I56H 1Q86J 3CC7H 1WKIA 1VQ9H 4IOCJ 5GADN 3CXCH 5H1SO 1YI2H 5GAGN 1KC8J 1K9MJ 2OTLH 3J7ZM 3CCQH 1VQ4H 1Q81J 1QVGH 3CCLH 1W2BH 2ZJQJ 1KQSH 4WFNJ 2QEXH 1YJ9H 1VQMH 1JJ2H 5HL7J 3PIOJ 3CC4H 5DM7J 1VQ5H 3DLLJ 3CC2H 4WFAJ 4WCEJ 4IOAJ 2QA4H 1VQ6H 1QVFH 3G6EH 1YIJH 1VQOH 1KD1J 3CCUH 3CCRH 4U67J 2ZJRJ 3CMEH 5GAHN 1YJNH 2ZJPJ 3CF5J 1VQ7H 1K8AJ 4WFBJ 3CCEH 1VQKH 1VQNH 5AN9F 1S72H 5JVHJ 1VQLH 1VQ8H 3CD6H 3CCVH 1Y69K 1Q82J 1YHQH 3G71H 1K73J 5JVGJ 3CCMH 1Q7YJ 1YJWH 1VQPH 5MLCO 1M1KJ 3G4SH 3CCJH 3OW2H 5GAEN 3CMAH
chains in the Genus database with same CATH superfamily
3B9JC 2PA2A 5AYXA 5HUOA 2WP4A 4KWWA 3CCSH 3PIPJ 3H5QA 4LHMA 1YITH 2B7NA 1NJIJ 1M90J 4UY8M 3NVWC 3NVZC 3I55H 4IO9J 5DM6J 4WF9J 4YEKA 2OTJH 3BIIE 4X46A 1QPQA 3TQVA 5EY3A 1N8RJ 3CPWH 1QAPA 3I56H 1Q86J 3CC7H 1WKIA 3FC4A 1VQ9H 4YYYA 4IOCJ 5GADN 3GNNA 2B7PA 1JRPB 3EUB4 5H1SO 3CXCH 5GAGN 1YI2H 1KC8J 1K9MJ 2OTLH 1O4UA 3J7ZM 3CCQH 3C2EA 1VQ4H 1Q81J 1QVGH 2W3SB 3CCLH 1N63B 2JBMA 1QPNA 1SIJA 2ZJQJ 1W2BH 1KQSH 1FMAE 4C7YA 4WFNJ 2QEXH 1YJ9H 1VDVA 4AP8A 1VQMH 1JJ2H 3ETRC 3NRZC 4C7ZA 2DSJA 3AM9A 5HL7J 4KWVA 3PIOJ 3CC4H 5DM7J 3RPFA 1FO4A 1VQ5H 1OTPA 4US8A 3DLLJ 2B7QA 3CC2H 4WFAJ 4WCEJ 1NVJA 4IOAJ 2QA4H 1VQ6H 2WK6A 3G6EH 1QVFH 4GA5A 2TPTA 1DGJA 1QPRA 4GA6A 2OMDA 1YIJH 3WO1A 1ZXIB 1VQOH 3AN1A 1YTEA 4GA4A 1BRWA 1JROB 1KD1J 3WNZA 4C80A 3CCUH 1N60B 4ZOHA 3CCRH 1N61B 1FIQC 3C2OA 1FFVB 3C2RA 5MPOC 2W3RB 1RM6A 3NVVC 4U67J 1YTDA 1N62B 2Q5WE 3C2VA 5HULA 1AZYA 3L0GA 2ZJRJ 2I1OA 3AMZA 3CMEH 5GAHN 1YJNH 4US9A 2QIEA 1SB3A 1UOUA 2WK5A 2ZJPJ 5AYZA 2I14A 3CF5J 2E3TA 1WYGA 3L4PA 1VLBA 4XR5A 1VQ7H 1K8AJ 4WFBJ 3CCEH 1VQKH 1FFUB 1VQNH 3C2FA 5AN9F 1S72H 3NVYC 5JVHJ 3NS1C 1VQLH 1VQ8H 1NVIE 2W54B 3CCVH 1Y69K 3CD6H 1Q82J 3FAHA 3PAJA 1YHQH 3G71H 2J0FA 1K73J 2W55B 1V97A 1QPOA 1N5XA 5JVGJ 3CCMH 1X1OA 4EAFA 5EP8A 1Q7YJ 1YJWH 1VQPH 4USAA 4I9AA 5HUPA 3VMMA 5MLCO 1M1KJ 1YTKA 1FM0E 4EADA 3G4SH 3CCJH 3SR6C 3OW2H 5AYYA 3WO0A 5GAEN 1N5WB 3CMAH
chains in the Genus database with same CATH topology
2PA2A 3CCSH 1YITH 3PIPJ 1NJIJ 1M90J 4UY8M 3I55H 4IO9J 5DM6J 4WF9J 2OTJH 1N8RJ 3CPWH 3I56H 1Q86J 3CC7H 1WKIA 1VQ9H 4IOCJ 5GADN 3CXCH 5H1SO 1YI2H 5GAGN 1KC8J 1K9MJ 2OTLH 3J7ZM 3CCQH 1VQ4H 1Q81J 1QVGH 3CCLH 1W2BH 2ZJQJ 1KQSH 4WFNJ 2QEXH 1YJ9H 1VQMH 1JJ2H 5HL7J 3PIOJ 3CC4H 5DM7J 1VQ5H 3DLLJ 3CC2H 4WFAJ 4WCEJ 4IOAJ 2QA4H 1VQ6H 1QVFH 3G6EH 1YIJH 1VQOH 1KD1J 3CCUH 3CCRH 4U67J 2ZJRJ 3CMEH 5GAHN 1YJNH 2ZJPJ 3CF5J 1VQ7H 1K8AJ 4WFBJ 3CCEH 1VQKH 1VQNH 5AN9F 1S72H 5JVHJ 1VQLH 1VQ8H 3CD6H 3CCVH 1Y69K 1Q82J 1YHQH 3G71H 1K73J 5JVGJ 3CCMH 1Q7YJ 1YJWH 1VQPH 5MLCO 1M1KJ 3G4SH 3CCJH 3OW2H 5GAEN 3CMAH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PA2 A;  3CCS H;  1YIT H;  3PIP J;  1NJI J;  1M90 J;  4UY8 M;  3I55 H;  4IO9 J;  5DM6 J;  4WF9 J;  2OTJ H;  1N8R J;  3CPW H;  3I56 H;  1Q86 J;  3CC7 H;  1WKI A;  1VQ9 H;  4IOC J;  5GAD N;  3CXC H;  5H1S O;  1YI2 H;  5GAG N;  1KC8 J;  1K9M J;  2OTL H;  3J7Z M;  3CCQ H;  1VQ4 H;  1Q81 J;  1QVG H;  3CCL H;  1W2B H;  2ZJQ J;  1KQS H;  4WFN J;  2QEX H;  1YJ9 H;  1VQM H;  1JJ2 H;  5HL7 J;  3PIO J;  3CC4 H;  5DM7 J;  1VQ5 H;  3DLL J;  3CC2 H;  4WFA J;  4WCE J;  4IOA J;  2QA4 H;  1VQ6 H;  1QVF H;  3G6E H;  1YIJ H;  1VQO H;  1KD1 J;  3CCU H;  3CCR H;  4U67 J;  2ZJR J;  3CME H;  5GAH N;  1YJN H;  2ZJP J;  3CF5 J;  1VQ7 H;  1K8A J;  4WFB J;  3CCE H;  1VQK H;  1VQN H;  5AN9 F;  1S72 H;  5JVH J;  1VQL H;  1VQ8 H;  3CD6 H;  3CCV H;  1Y69 K;  1Q82 J;  1YHQ H;  3G71 H;  1K73 J;  5JVG J;  3CCM H;  1Q7Y J;  1YJW H;  1VQP H;  5MLC O;  1M1K J;  3G4S H;  3CCJ H;  3OW2 H;  5GAE N;  3CMA H; 
#chains in the Genus database with same CATH topology
 3B9J C;  2PA2 A;  5AYX A;  5HUO A;  2WP4 A;  4KWW A;  3CCS H;  3PIP J;  3H5Q A;  4LHM A;  1YIT H;  2B7N A;  1NJI J;  1M90 J;  4UY8 M;  3NVW C;  3NVZ C;  3I55 H;  4IO9 J;  5DM6 J;  4WF9 J;  4YEK A;  2OTJ H;  3BII E;  4X46 A;  1QPQ A;  3TQV A;  5EY3 A;  1N8R J;  3CPW H;  1QAP A;  3I56 H;  1Q86 J;  3CC7 H;  1WKI A;  3FC4 A;  1VQ9 H;  4YYY A;  4IOC J;  5GAD N;  3GNN A;  2B7P A;  1JRP B;  3EUB 4;  5H1S O;  3CXC H;  5GAG N;  1YI2 H;  1KC8 J;  1K9M J;  2OTL H;  1O4U A;  3J7Z M;  3CCQ H;  3C2E A;  1VQ4 H;  1Q81 J;  1QVG H;  2W3S B;  3CCL H;  1N63 B;  2JBM A;  1QPN A;  1SIJ A;  2ZJQ J;  1W2B H;  1KQS H;  1FMA E;  4C7Y A;  4WFN J;  2QEX H;  1YJ9 H;  1VDV A;  4AP8 A;  1VQM H;  1JJ2 H;  3ETR C;  3NRZ C;  4C7Z A;  2DSJ A;  3AM9 A;  5HL7 J;  4KWV A;  3PIO J;  3CC4 H;  5DM7 J;  3RPF A;  1FO4 A;  1VQ5 H;  1OTP A;  4US8 A;  3DLL J;  2B7Q A;  3CC2 H;  4WFA J;  4WCE J;  1NVJ A;  4IOA J;  2QA4 H;  1VQ6 H;  2WK6 A;  3G6E H;  1QVF H;  4GA5 A;  2TPT A;  1DGJ A;  1QPR A;  4GA6 A;  2OMD A;  1YIJ H;  3WO1 A;  1ZXI B;  1VQO H;  3AN1 A;  1YTE A;  4GA4 A;  1BRW A;  1JRO B;  1KD1 J;  3WNZ A;  4C80 A;  3CCU H;  1N60 B;  4ZOH A;  3CCR H;  1N61 B;  1FIQ C;  3C2O A;  1FFV B;  3C2R A;  5MPO C;  2W3R B;  1RM6 A;  3NVV C;  4U67 J;  1YTD A;  1N62 B;  2Q5W E;  3C2V A;  5HUL A;  1AZY A;  3L0G A;  2ZJR J;  2I1O A;  3AMZ A;  3CME H;  5GAH N;  1YJN H;  4US9 A;  2QIE A;  1SB3 A;  1UOU A;  2WK5 A;  2ZJP J;  5AYZ A;  2I14 A;  3CF5 J;  2E3T A;  1WYG A;  3L4P A;  1VLB A;  4XR5 A;  1VQ7 H;  1K8A J;  4WFB J;  3CCE H;  1VQK H;  1FFU B;  1VQN H;  3C2F A;  5AN9 F;  1S72 H;  3NVY C;  5JVH J;  3NS1 C;  1VQL H;  1VQ8 H;  1NVI E;  2W54 B;  3CCV H;  1Y69 K;  3CD6 H;  1Q82 J;  3FAH A;  3PAJ A;  1YHQ H;  3G71 H;  2J0F A;  1K73 J;  2W55 B;  1V97 A;  1QPO A;  1N5X A;  5JVG J;  3CCM H;  1X1O A;  4EAF A;  5EP8 A;  1Q7Y J;  1YJW H;  1VQP H;  4USA A;  4I9A A;  5HUP A;  3VMM A;  5MLC O;  1M1K J;  1YTK A;  1FM0 E;  4EAD A;  3G4S H;  3CCJ H;  3SR6 C;  3OW2 H;  5AYY A;  3WO0 A;  5GAE N;  1N5W B;  3CMA H; 
#chains in the Genus database with same CATH homology
 2PA2 A;  3CCS H;  1YIT H;  3PIP J;  1NJI J;  1M90 J;  4UY8 M;  3I55 H;  4IO9 J;  5DM6 J;  4WF9 J;  2OTJ H;  1N8R J;  3CPW H;  3I56 H;  1Q86 J;  3CC7 H;  1WKI A;  1VQ9 H;  4IOC J;  5GAD N;  3CXC H;  5H1S O;  1YI2 H;  5GAG N;  1KC8 J;  1K9M J;  2OTL H;  3J7Z M;  3CCQ H;  1VQ4 H;  1Q81 J;  1QVG H;  3CCL H;  1W2B H;  2ZJQ J;  1KQS H;  4WFN J;  2QEX H;  1YJ9 H;  1VQM H;  1JJ2 H;  5HL7 J;  3PIO J;  3CC4 H;  5DM7 J;  1VQ5 H;  3DLL J;  3CC2 H;  4WFA J;  4WCE J;  4IOA J;  2QA4 H;  1VQ6 H;  1QVF H;  3G6E H;  1YIJ H;  1VQO H;  1KD1 J;  3CCU H;  3CCR H;  4U67 J;  2ZJR J;  3CME H;  5GAH N;  1YJN H;  2ZJP J;  3CF5 J;  1VQ7 H;  1K8A J;  4WFB J;  3CCE H;  1VQK H;  1VQN H;  5AN9 F;  1S72 H;  5JVH J;  1VQL H;  1VQ8 H;  3CD6 H;  3CCV H;  1Y69 K;  1Q82 J;  1YHQ H;  3G71 H;  1K73 J;  5JVG J;  3CCM H;  1Q7Y J;  1YJW H;  1VQP H;  5MLC O;  1M1K J;  3G4S H;  3CCJ H;  3OW2 H;  5GAE N;  3CMA H; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.