5GAHN

Rnc in complex with srp with detached ng domain
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
136
structure length
136
Chain Sequence
MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of the E. coli translating ribosome with SRP and its receptor and with the translocon.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords SRP 4.5S RNA
total genus 27
structure length 136
sequence length 136
ec nomenclature
pdb deposition date 2015-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
N PF00252 Ribosomal_L16 Ribosomal protein L16p/L10e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 5gahN01
1S72H 3CF5J 1WKIA 1VQ6H 3PIOJ 1KC8J 4UY8M 1QVGH 1VQ9H 1VQNH 3CCEH 5AN9F 3CCLH 1YJ9H 5JVHJ 5JVGJ 3CD6H 1VQ5H 5MLCO 1M90J 5DM6J 1VQPH 1VQMH 1Q82J 1VQ4H 1K73J 5GAEN 5HL7J 1VQOH 3CCQH 3CCUH 3PIPJ 1YI2H 1YJWH 1K8AJ 3OW2H 3G4SH 3CCMH 3CC2H 3CC7H 3G6EH 1Q86J 4WF9J 1M1KJ 1VQLH 5GADN 1KD1J 1YHQH 1VQKH 4WCEJ 4IOAJ 1QVFH 2OTJH 3CC4H 1YITH 3J7ZM 3CMAH 5GAHN 2QEXH 3I55H 1Y69K 1Q7YJ 2ZJPJ 1YJNH 1JJ2H 3CCJH 2ZJQJ 3I56H 2OTLH 1N8RJ 1YIJH 5DM7J 2PA2A 1VQ7H 1W2BH 3CMEH 3CCVH 4WFNJ 2ZJRJ 4WFBJ 3CCSH 3G71H 3CXCH 3CCRH 3DLLJ 4IOCJ 5GAGN 1NJIJ 2QA4H 3CPWH 4U67J 1Q81J 4WFAJ 1VQ8H 1K9MJ 4IO9J 1KQSH 5H1SO
chains in the Genus database with same CATH superfamily
1V97A 1S72H 3VMMA 3NVYC 4C7YA 2Q5WE 1FIQC 1O4UA 4US9A 1FM0E 4AP8A 3CF5J 5AYXA 4USAA 3AM9A 1SB3A 1WKIA 1VQ6H 2WP4A 3PIOJ 4C7ZA 4XR5A 4GA4A 3AN1A 1KC8J 1N5WB 4UY8M 1QVGH 1VQ9H 3FAHA 1VQNH 1RM6A 3CCEH 5HUOA 5AN9F 3CCLH 4I9AA 1VDVA 3ETRC 1YJ9H 1UOUA 3BIIE 3C2RA 5HULA 5HUPA 1FMAE 5JVHJ 5JVGJ 3CD6H 1X1OA 1VQ5H 5MLCO 4YYYA 1M90J 5DM6J 5EP8A 1VQPH 1VQMH 1Q82J 1VQ4H 1QAPA 1K73J 4KWWA 4X46A 2I1OA 1WYGA 3SR6C 2WK5A 5GAEN 5HL7J 4GA5A 1VQOH 3CCQH 1DGJA 1NVJA 5EY3A 3WNZA 1N60B 4YEKA 3CCUH 4ZOHA 5MPOC 3PIPJ 1YI2H 1FFUB 1YJWH 1FO4A 3WO1A 1K8AJ 1YTKA 3L4PA 3OW2H 3EUB4 2OMDA 3NRZC 2DSJA 2B7PA 3TQVA 1ZXIB 3G4SH 3CC2H 3CCMH 3CC7H 1NVIE 3G6EH 1Q86J 4WF9J 1M1KJ 1VQLH 5GADN 3NVWC 1KD1J 3C2OA 1YTDA 2W55B 1YHQH 1N63B 1VQKH 1JROB 4WCEJ 4IOAJ 1OTPA 3H5QA 4KWVA 1QVFH 2OTJH 1SIJA 2B7QA 2I14A 2JBMA 3CC4H 1YITH 3J7ZM 1N5XA 3NVZC 4LHMA 5GAHN 2QEXH 3I55H 3CMAH 1Y69K 3FC4A 1Q7YJ 2W3RB 3B9JC 2ZJPJ 1YJNH 1JJ2H 3CCJH 2ZJQJ 3I56H 2OTLH 3C2EA 1N8RJ 1YIJH 3L0GA 3NS1C 5DM7J 2PA2A 1VQ7H 1FFVB 1W2BH 3CMEH 3NVVC 2W3SB 2W54B 1N61B 4US8A 1VLBA 3CCVH 1YTEA 4WFNJ 2TPTA 2ZJRJ 4WFBJ 4GA6A 5AYZA 3CCSH 3G71H 1QPRA 3GNNA 2B7NA 2E3TA 3CXCH 3C2VA 3RPFA 1QPNA 3WO0A 4C80A 1JRPB 3C2FA 4EAFA 3CCRH 3DLLJ 4IOCJ 5GAGN 3PAJA 2QA4H 1NJIJ 3CPWH 2QIEA 2WK6A 4U67J 1Q81J 1N62B 4WFAJ 1AZYA 1QPOA 2J0FA 1BRWA 4EADA 1K9MJ 5AYYA 1QPQA 3AMZA 1VQ8H 4IO9J 1KQSH 5H1SO
chains in the Genus database with same CATH topology
1S72H 3CF5J 1WKIA 1VQ6H 3PIOJ 1KC8J 4UY8M 1QVGH 1VQ9H 1VQNH 3CCEH 5AN9F 3CCLH 1YJ9H 5JVHJ 5JVGJ 3CD6H 1VQ5H 5MLCO 1M90J 5DM6J 1VQPH 1VQMH 1Q82J 1VQ4H 1K73J 5GAEN 5HL7J 1VQOH 3CCQH 3CCUH 3PIPJ 1YI2H 1YJWH 1K8AJ 3OW2H 3G4SH 3CCMH 3CC2H 3CC7H 3G6EH 1Q86J 4WF9J 1M1KJ 1VQLH 5GADN 1KD1J 1YHQH 1VQKH 4WCEJ 4IOAJ 1QVFH 2OTJH 3CC4H 1YITH 3J7ZM 3CMAH 5GAHN 2QEXH 3I55H 1Y69K 1Q7YJ 2ZJPJ 1YJNH 1JJ2H 3CCJH 2ZJQJ 3I56H 2OTLH 1N8RJ 1YIJH 5DM7J 2PA2A 1VQ7H 1W2BH 3CMEH 3CCVH 4WFNJ 2ZJRJ 4WFBJ 3CCSH 3G71H 3CXCH 3CCRH 3DLLJ 4IOCJ 5GAGN 1NJIJ 2QA4H 3CPWH 4U67J 1Q81J 4WFAJ 1VQ8H 1K9MJ 4IO9J 1KQSH 5H1SO
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S72 H;  3CF5 J;  1WKI A;  1VQ6 H;  3PIO J;  1KC8 J;  4UY8 M;  1QVG H;  1VQ9 H;  1VQN H;  3CCE H;  5AN9 F;  3CCL H;  1YJ9 H;  5JVH J;  5JVG J;  3CD6 H;  1VQ5 H;  5MLC O;  1M90 J;  5DM6 J;  1VQP H;  1VQM H;  1Q82 J;  1VQ4 H;  1K73 J;  5GAE N;  5HL7 J;  1VQO H;  3CCQ H;  3CCU H;  3PIP J;  1YI2 H;  1YJW H;  1K8A J;  3OW2 H;  3G4S H;  3CCM H;  3CC2 H;  3CC7 H;  3G6E H;  1Q86 J;  4WF9 J;  1M1K J;  1VQL H;  5GAD N;  1KD1 J;  1YHQ H;  1VQK H;  4WCE J;  4IOA J;  1QVF H;  2OTJ H;  3CC4 H;  1YIT H;  3J7Z M;  3CMA H;  5GAH N;  2QEX H;  3I55 H;  1Y69 K;  1Q7Y J;  2ZJP J;  1YJN H;  1JJ2 H;  3CCJ H;  2ZJQ J;  3I56 H;  2OTL H;  1N8R J;  1YIJ H;  5DM7 J;  2PA2 A;  1VQ7 H;  1W2B H;  3CME H;  3CCV H;  4WFN J;  2ZJR J;  4WFB J;  3CCS H;  3G71 H;  3CXC H;  3CCR H;  3DLL J;  4IOC J;  5GAG N;  1NJI J;  2QA4 H;  3CPW H;  4U67 J;  1Q81 J;  4WFA J;  1VQ8 H;  1K9M J;  4IO9 J;  1KQS H;  5H1S O; 
#chains in the Genus database with same CATH topology
 1V97 A;  1S72 H;  3VMM A;  3NVY C;  4C7Y A;  2Q5W E;  1FIQ C;  1O4U A;  4US9 A;  1FM0 E;  4AP8 A;  3CF5 J;  5AYX A;  4USA A;  3AM9 A;  1SB3 A;  1WKI A;  1VQ6 H;  2WP4 A;  3PIO J;  4C7Z A;  4XR5 A;  4GA4 A;  3AN1 A;  1KC8 J;  1N5W B;  4UY8 M;  1QVG H;  1VQ9 H;  3FAH A;  1VQN H;  1RM6 A;  3CCE H;  5HUO A;  5AN9 F;  3CCL H;  4I9A A;  1VDV A;  3ETR C;  1YJ9 H;  1UOU A;  3BII E;  3C2R A;  5HUL A;  5HUP A;  1FMA E;  5JVH J;  5JVG J;  3CD6 H;  1X1O A;  1VQ5 H;  5MLC O;  4YYY A;  1M90 J;  5DM6 J;  5EP8 A;  1VQP H;  1VQM H;  1Q82 J;  1VQ4 H;  1QAP A;  1K73 J;  4KWW A;  4X46 A;  2I1O A;  1WYG A;  3SR6 C;  2WK5 A;  5GAE N;  5HL7 J;  4GA5 A;  1VQO H;  3CCQ H;  1DGJ A;  1NVJ A;  5EY3 A;  3WNZ A;  1N60 B;  4YEK A;  3CCU H;  4ZOH A;  5MPO C;  3PIP J;  1YI2 H;  1FFU B;  1YJW H;  1FO4 A;  3WO1 A;  1K8A J;  1YTK A;  3L4P A;  3OW2 H;  3EUB 4;  2OMD A;  3NRZ C;  2DSJ A;  2B7P A;  3TQV A;  1ZXI B;  3G4S H;  3CC2 H;  3CCM H;  3CC7 H;  1NVI E;  3G6E H;  1Q86 J;  4WF9 J;  1M1K J;  1VQL H;  5GAD N;  3NVW C;  1KD1 J;  3C2O A;  1YTD A;  2W55 B;  1YHQ H;  1N63 B;  1VQK H;  1JRO B;  4WCE J;  4IOA J;  1OTP A;  3H5Q A;  4KWV A;  1QVF H;  2OTJ H;  1SIJ A;  2B7Q A;  2I14 A;  2JBM A;  3CC4 H;  1YIT H;  3J7Z M;  1N5X A;  3NVZ C;  4LHM A;  5GAH N;  2QEX H;  3I55 H;  3CMA H;  1Y69 K;  3FC4 A;  1Q7Y J;  2W3R B;  3B9J C;  2ZJP J;  1YJN H;  1JJ2 H;  3CCJ H;  2ZJQ J;  3I56 H;  2OTL H;  3C2E A;  1N8R J;  1YIJ H;  3L0G A;  3NS1 C;  5DM7 J;  2PA2 A;  1VQ7 H;  1FFV B;  1W2B H;  3CME H;  3NVV C;  2W3S B;  2W54 B;  1N61 B;  4US8 A;  1VLB A;  3CCV H;  1YTE A;  4WFN J;  2TPT A;  2ZJR J;  4WFB J;  4GA6 A;  5AYZ A;  3CCS H;  3G71 H;  1QPR A;  3GNN A;  2B7N A;  2E3T A;  3CXC H;  3C2V A;  3RPF A;  1QPN A;  3WO0 A;  4C80 A;  1JRP B;  3C2F A;  4EAF A;  3CCR H;  3DLL J;  4IOC J;  5GAG N;  3PAJ A;  2QA4 H;  1NJI J;  3CPW H;  2QIE A;  2WK6 A;  4U67 J;  1Q81 J;  1N62 B;  4WFA J;  1AZY A;  1QPO A;  2J0F A;  1BRW A;  4EAD A;  1K9M J;  5AYY A;  1QPQ A;  3AMZ A;  1VQ8 H;  4IO9 J;  1KQS H;  5H1S O; 
#chains in the Genus database with same CATH homology
 1S72 H;  3CF5 J;  1WKI A;  1VQ6 H;  3PIO J;  1KC8 J;  4UY8 M;  1QVG H;  1VQ9 H;  1VQN H;  3CCE H;  5AN9 F;  3CCL H;  1YJ9 H;  5JVH J;  5JVG J;  3CD6 H;  1VQ5 H;  5MLC O;  1M90 J;  5DM6 J;  1VQP H;  1VQM H;  1Q82 J;  1VQ4 H;  1K73 J;  5GAE N;  5HL7 J;  1VQO H;  3CCQ H;  3CCU H;  3PIP J;  1YI2 H;  1YJW H;  1K8A J;  3OW2 H;  3G4S H;  3CCM H;  3CC2 H;  3CC7 H;  3G6E H;  1Q86 J;  4WF9 J;  1M1K J;  1VQL H;  5GAD N;  1KD1 J;  1YHQ H;  1VQK H;  4WCE J;  4IOA J;  1QVF H;  2OTJ H;  3CC4 H;  1YIT H;  3J7Z M;  3CMA H;  5GAH N;  2QEX H;  3I55 H;  1Y69 K;  1Q7Y J;  2ZJP J;  1YJN H;  1JJ2 H;  3CCJ H;  2ZJQ J;  3I56 H;  2OTL H;  1N8R J;  1YIJ H;  5DM7 J;  2PA2 A;  1VQ7 H;  1W2B H;  3CME H;  3CCV H;  4WFN J;  2ZJR J;  4WFB J;  3CCS H;  3G71 H;  3CXC H;  3CCR H;  3DLL J;  4IOC J;  5GAG N;  1NJI J;  2QA4 H;  3CPW H;  4U67 J;  1Q81 J;  4WFA J;  1VQ8 H;  1K9M J;  4IO9 J;  1KQS H;  5H1S O; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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