The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
71
|
sequence length |
233
|
structure length |
233
|
Chain Sequence |
MVKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structures of the CBS and DRTGG Domains of the Regulatory Region of Clostridiumperfringens Pyrophosphatase Complexed with the Inhibitor, AMP, and Activator, Diadenosine Tetraphosphate.
pubmed doi rcsb |
| molecule keywords |
Probable manganase-dependent inorganic pyrophosphatase
|
| molecule tags |
Hydrolase
|
| source organism |
Clostridium perfringens
|
| total genus |
71
|
| structure length |
233
|
| sequence length |
233
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
3.6.1.1: Inorganic diphosphatase. |
| pdb deposition date | 2009-12-15 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00571 | CBS | CBS domain |
| A | PF07085 | DRTGG | DRTGG domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | CBS-domain | CBS-domain | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 | HprK N-terminal domain-like |
#chains in the Genus database with same CATH superfamily 3KPD A; 2YZQ A; 3PC2 A; 2QR1 E; 4L0D A; 4FRY A; 3L31 A; 3KXR A; 4IY4 A; 2RC3 A; 2OUX A; 1Y5H A; 3KPC A; 4IYS A; 3LQN A; 4IY2 A; 3KPB A; 1PBJ A; 5K24 C; 1KNX A; 3SL7 A; 4IY0 A; 2YVX A; 2QRD E; 4L27 A; 3FHM A; 5K23 C; 3PC4 A; 4L3V A; 5K25 C; 2IOJ A; 3OI8 A; 5IIP A; 2PFI A; 3FWS A; 1YAV A; 4IY3 A; 3ORG A; 4O9K A; 4UUU A; 2QH1 A; 4ESY A; 1XKF A; 4P1G A; 4ESY B; 4HG0 A; 3GBY A; 3LV9 A; 2UV4 A; 2OOY E; 3L2B A; 2OOX E; 1O50 A; 2QRC E; 4COO A; 4GQV A; 2UV6 A; 2EMQ A; 1PVM A; 2QRE E; 3OCM A; 5K22 B; 3OCO A; 4PCU A; 3LFZ A; 4DQW A; 2UV5 A; 5LXQ A; 5MMZ A; 2YVY A; 3T4N C; 3HF7 A; 2UV7 A; 5KS7 A; 2P9M A; 2EF7 A; 3I8N A; 2RIF A; 4P1O A; 3K2V A; 2ZY9 A; 3LHH A; 3DDJ A; 3FV6 A; 4GQW A; 2YVZ A; 2QLV C; 2NYC A; 3TDH C; 3KH5 A; 4NOC A; 3PC3 A; 2YZI A; 2NYE A; 3FNA A; 4FXS A; 2RIH A; 3FWR A; 3K6E A; 3TE5 C; 2O16 A; 2D4Z A; 4L28 A; 1KO7 A; 4GQY A; #chains in the Genus database with same CATH topology 3EH0 A; 3KPD A; 2YZQ A; 3PC2 A; 2QR1 E; 4L0D A; 3PMO A; 2J9L A; 2AM1 A; 4FRY A; 1NMO A; 3L31 A; 3KXR A; 2IU8 A; 4IY4 A; 4QF5 A; 2RC3 A; 4BUB A; 3ZM5 A; 2OUX A; 4CVK A; 1Y5H A; 3KPC A; 4IYS A; 3LQN A; 4IY2 A; 3KPB A; 1PBJ A; 2FYW A; 5K24 C; 1KNX A; 3SL7 A; 4IY0 A; 3ZL8 A; 2YVX A; 4C13 A; 2QRD E; 2YYB A; 3FHM A; 4L27 A; 5K23 C; 4IHH A; 3PC4 A; 4L3V A; 4IHG A; 5K25 C; 2IOJ A; 3OI8 A; 5IIP A; 4CVL A; 2PFI A; 3FWS A; 2IUA A; 1YAV A; 4E75 A; 4IY3 A; 1NMP A; 3ORG A; 4O9K A; 4UUU A; 2XJA A; 2QH1 A; 2WTZ A; 4ESY A; 4ZIY A; 1XKF A; 4P1G A; 1E8C A; 4ESY B; 4HG0 A; 3GBY A; 3LV9 A; 2UV4 A; 2AM2 A; 4QDI A; 4E79 A; 2OOY E; 3L2B A; 4IWG A; 2OOX E; 3EEQ A; 1O50 A; 2QRC E; 4COO A; 4GQV A; 2UV6 A; 2EMQ A; 1PVM A; 2QRE E; 3OCM A; 2JA3 A; 5K22 B; 2IU9 A; 3OCO A; 4PCU A; 3LFZ A; 4DQW A; 2UV5 A; 4CVM A; 5LXQ A; 5MMZ A; 2YVY A; 3T4N C; 3HF7 A; 2UV7 A; 5KS7 A; 2P9M A; 3WSD A; 2EF7 A; 3I8N A; 1GG4 A; 2RIF A; 4P1O A; 3K2V A; 2ZY9 A; 3LHH A; 3DDJ A; 3FV6 A; 4GQW A; 3ZM6 A; 4IHF A; 2YVZ A; 2QLV C; 2NYC A; 3TDH C; 3KH5 A; 4NOC A; 3PC3 A; 2YZI A; 2NYE A; 3FNA A; 4FXS A; 3WSH A; 4C12 A; 3WSF A; 2RIH A; 3FWR A; 3K6E A; 3TE5 C; 3WSI A; 3WSG A; 4IWM A; 3WSE A; 2O16 A; 2D4Z A; 4L28 A; 1KO7 A; 4GQY A; #chains in the Genus database with same CATH homology 3KPD A; 2YZQ A; 3PC2 A; 2QR1 E; 4L0D A; 2J9L A; 4FRY A; 3L31 A; 3KXR A; 4IY4 A; 2RC3 A; 2OUX A; 1Y5H A; 3KPC A; 4IYS A; 3LQN A; 4IY2 A; 3KPB A; 1PBJ A; 5K24 C; 1KNX A; 3SL7 A; 4IY0 A; 2YVX A; 2QRD E; 3FHM A; 4L27 A; 5K23 C; 3PC4 A; 4L3V A; 5K25 C; 2IOJ A; 3OI8 A; 5IIP A; 2PFI A; 3FWS A; 1YAV A; 4IY3 A; 3ORG A; 4O9K A; 4UUU A; 2QH1 A; 4ESY A; 1XKF A; 4P1G A; 4ESY B; 4HG0 A; 3GBY A; 3LV9 A; 2UV4 A; 2OOY E; 3L2B A; 2OOX E; 1O50 A; 2QRC E; 4COO A; 4GQV A; 2UV6 A; 2EMQ A; 1PVM A; 2QRE E; 3OCM A; 2JA3 A; 5K22 B; 3OCO A; 4PCU A; 3LFZ A; 4DQW A; 2UV5 A; 5LXQ A; 5MMZ A; 2YVY A; 3T4N C; 3HF7 A; 2UV7 A; 5KS7 A; 2P9M A; 2EF7 A; 3I8N A; 2RIF A; 4P1O A; 3K2V A; 2ZY9 A; 3LHH A; 3DDJ A; 3FV6 A; 4GQW A; 2YVZ A; 2QLV C; 2NYC A; 3TDH C; 3KH5 A; 4NOC A; 3PC3 A; 2YZI A; 2NYE A; 3FNA A; 4FXS A; 2RIH A; 3FWR A; 3K6E A; 3TE5 C; 2O16 A; 2D4Z A; 4L28 A; 1KO7 A; 4GQY A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
