1C4TA

Catalytic domain from trimeric dihydrolipoamide succinyltransferase
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
229
structure length
226
Chain Sequence
RSEKRVPMRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Expression, purification, and structural analysis of the trimeric form of the catalytic domain of the Escherichia coli dihydrolipoamide succinyltransferase.
pubmed rcsb
molecule tags Transferase
source organism Escherichia coli
molecule keywords PROTEIN (DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE)
total genus 64
structure length 226
sequence length 229
chains with identical sequence B, C
ec nomenclature ec 2.3.1.61: Dihydrolipoyllysine-residue succinyltransferase.
pdb deposition date 1999-09-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1c4tA00
2RKTA 3MAEA 3U9BA 5DUAA 1DPCA 1EACA 1XL8A 4CLAA 3U9FA 5FANA 1EABA 1Q23A 2I9DA 1XMDA 2E1VA 1Q9JA 5KJTA 3L60A 4G2MA 1XL7A 2E1TA 4KECA 4HVMA 2XHGA 2E1UA 5DU9A 1C4TA 1DPDA 1EAFA 3FOTA 4JN5A 4JN3A 2RKVA 1CLAA 3CLAA 2II3A 2II5A 1NOCB 1CIAA 5KJVA 2JGPA 1EAEA 5KJUA 1SCZA 4G0BA 2XR7A 1DPBA 2BGHA 5T3EA 5KJSA 2VSQA 2IHWA 2ZBAA 1L5AA 1PD5A 1EAAA 1EADA 2II4A 1E2OA 4N72A 5KJWA 4KE4A 2CLAA 3B30A 3FP0A 1XMCA 1QCAA 3B2SA 4G22A 5FALA
chains in the Genus database with same CATH superfamily
2DEBA 3U9BA 5DUAA 1EACA 3U9FA 1T7QA 3L60A 1NDIA 4KECA 4HVMA 4JN5A 3CLAA 2II3A 2II5A 5KJUA 2XR7A 1T7OA 2FY2A 2H3PA 1T7NA 1NM8A 3B30A 5FALA 4G22A 1S5OA 1NDFA 4EP9A 1EABA 1Q23A 5DU9A 2E1UA 2RKVA 2FY5A 2JGPA 1SCZA 2FW3A 1DPBA 4EPHA 2VSQA 2IHWA 2ZBAA 2II4A 1E2OA 4N72A 1XMCA 1QCAA 3MAEA 4CLAA 4EYWA 1XMDA 1NDBA 5KJTA 2H3UA 1EAFA 3FOTA 4JN3A 1CIAA 5KJVA 1EAEA 5KJSA 1EAAA 1T1UA 2FY4A 5KJWA 2H4TA 2H3WA 4KE4A 2RKTA 1DPCA 1XL8A 2RCUA 5FANA 2I9DA 2E1VA 1Q9JA 2FY3A 4G2MA 1XL7A 2E1TA 2XHGA 1C4TA 1DPDA 1CLAA 1NOCB 4G0BA 1Q6XA 2BGHA 5T3EA 1L5AA 1PD5A 1EADA 2FYOA 2CLAA 3FP0A 3B2SA
chains in the Genus database with same CATH topology
2RKTA 3MAEA 3U9BA 5DUAA 1DPCA 1EACA 1XL8A 4CLAA 3U9FA 5FANA 1EABA 1Q23A 2I9DA 1XMDA 2E1VA 1Q9JA 5KJTA 3L60A 4G2MA 1XL7A 2E1TA 4KECA 4HVMA 2XHGA 2E1UA 5DU9A 1C4TA 1DPDA 1EAFA 3FOTA 4JN5A 4JN3A 2RKVA 1CLAA 3CLAA 2II3A 2II5A 1NOCB 1CIAA 5KJVA 2JGPA 1EAEA 5KJUA 1SCZA 4G0BA 2XR7A 1DPBA 2BGHA 5T3EA 5KJSA 2VSQA 2IHWA 2ZBAA 1L5AA 1PD5A 1EAAA 1EADA 2II4A 1E2OA 4N72A 5KJWA 4KE4A 2CLAA 3B30A 3FP0A 1XMCA 1QCAA 3B2SA 4G22A 5FALA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RKT A;  3MAE A;  3U9B A;  5DUA A;  1DPC A;  1EAC A;  1XL8 A;  4CLA A;  3U9F A;  5FAN A;  1EAB A;  1Q23 A;  2I9D A;  1XMD A;  2E1V A;  1Q9J A;  5KJT A;  3L60 A;  4G2M A;  1XL7 A;  2E1T A;  4KEC A;  4HVM A;  2XHG A;  2E1U A;  5DU9 A;  1C4T A;  1DPD A;  1EAF A;  3FOT A;  4JN5 A;  4JN3 A;  2RKV A;  1CLA A;  3CLA A;  2II3 A;  2II5 A;  1NOC B;  1CIA A;  5KJV A;  2JGP A;  1EAE A;  5KJU A;  1SCZ A;  4G0B A;  2XR7 A;  1DPB A;  2BGH A;  5T3E A;  5KJS A;  2VSQ A;  2IHW A;  2ZBA A;  1L5A A;  1PD5 A;  1EAA A;  1EAD A;  2II4 A;  1E2O A;  4N72 A;  5KJW A;  4KE4 A;  2CLA A;  3B30 A;  3FP0 A;  1XMC A;  1QCA A;  3B2S A;  4G22 A;  5FAL A; 
#chains in the Genus database with same CATH topology
 2DEB A;  3U9B A;  5DUA A;  1EAC A;  3U9F A;  1T7Q A;  3L60 A;  1NDI A;  4KEC A;  4HVM A;  4JN5 A;  3CLA A;  2II3 A;  2II5 A;  5KJU A;  2XR7 A;  1T7O A;  2FY2 A;  2H3P A;  1T7N A;  1NM8 A;  3B30 A;  5FAL A;  4G22 A;  1S5O A;  1NDF A;  4EP9 A;  1EAB A;  1Q23 A;  5DU9 A;  2E1U A;  2RKV A;  2FY5 A;  2JGP A;  1SCZ A;  2FW3 A;  1DPB A;  4EPH A;  2VSQ A;  2IHW A;  2ZBA A;  2II4 A;  1E2O A;  4N72 A;  1XMC A;  1QCA A;  3MAE A;  4CLA A;  4EYW A;  1XMD A;  1NDB A;  5KJT A;  2H3U A;  1EAF A;  3FOT A;  4JN3 A;  1CIA A;  5KJV A;  1EAE A;  5KJS A;  1EAA A;  1T1U A;  2FY4 A;  5KJW A;  2H4T A;  2H3W A;  4KE4 A;  2RKT A;  1DPC A;  1XL8 A;  2RCU A;  5FAN A;  2I9D A;  2E1V A;  1Q9J A;  2FY3 A;  4G2M A;  1XL7 A;  2E1T A;  2XHG A;  1C4T A;  1DPD A;  1CLA A;  1NOC B;  4G0B A;  1Q6X A;  2BGH A;  5T3E A;  1L5A A;  1PD5 A;  1EAD A;  2FYO A;  2CLA A;  3FP0 A;  3B2S A; 
#chains in the Genus database with same CATH homology
 2RKT A;  3MAE A;  3U9B A;  5DUA A;  1DPC A;  1EAC A;  1XL8 A;  4CLA A;  3U9F A;  5FAN A;  1EAB A;  1Q23 A;  2I9D A;  1XMD A;  2E1V A;  1Q9J A;  5KJT A;  3L60 A;  4G2M A;  1XL7 A;  2E1T A;  4KEC A;  4HVM A;  2XHG A;  2E1U A;  5DU9 A;  1C4T A;  1DPD A;  1EAF A;  3FOT A;  4JN5 A;  4JN3 A;  2RKV A;  1CLA A;  3CLA A;  2II3 A;  2II5 A;  1NOC B;  1CIA A;  5KJV A;  2JGP A;  1EAE A;  5KJU A;  1SCZ A;  4G0B A;  2XR7 A;  1DPB A;  2BGH A;  5T3E A;  5KJS A;  2VSQ A;  2IHW A;  2ZBA A;  1L5A A;  1PD5 A;  1EAA A;  1EAD A;  2II4 A;  1E2O A;  4N72 A;  5KJW A;  4KE4 A;  2CLA A;  3B30 A;  3FP0 A;  1XMC A;  1QCA A;  3B2S A;  4G22 A;  5FAL A; 
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