1Q6XA

Crystal structure of rat choline acetyltransferase
Total Genus 215
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
215
sequence length
600
structure length
600
Chain Sequence
WEELDLPKLPVPPLQQTLATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGETLQEKLLERQEKTANWVSEYWLNDMYLNNRLALPVNSSPAVIFARQHFQDTNDQLRFAACLISGVLSYKTLLDSHSLPTDWAKGQLSGQPLCMKQYYRLFSSYRLPGHTQDTLVAQKSSIMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLDMIERCICLVCLDGPGTGELSDTHRALQLLHGGGCSLNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHLLKHMMTSNKKLVRADSVSELPAPRRLRWKCSPETQGHLASSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQKYSPDGFIQVALQLAYYRLYQRLVPTYESASIRRFQEGRVDNIRSATPEALAFVQAMTDHKAAMPASEKLQLLQTAMQAQTEYTVMAITGMAIDNHLLALRELARDLCKEPPEMFMDETYLMSNRFVLSTSQVPTTMEMFCCYGPVVPNGYGACYNPQPEAITFCISSFHSCKETSSVEFAEAVGASLVDMRDLCSSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords choline O-acetyltransferase
publication title Choline acetyltransferase structure reveals distribution of mutations that cause motor disorders.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 215
structure length 600
sequence length 600
chains with identical sequence B
ec nomenclature ec 2.3.1.6: Choline O-acetyltransferase.
pdb deposition date 2003-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1q6xA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1q6xA02
1T1UA 2H4TA 2FW3A 1T7QA 1NDFA 1Q6XA 2DEBA 2FY5A 4EP9A 2H3PA 1NDIA 2H3WA 2RCUA 1S5OA 4EPHA 1T7OA 2FYOA 1T7NA 2FY4A 1NDBA 4EYWA 1NM8A 2FY3A 2H3UA 2FY2A
chains in the Genus database with same CATH superfamily
1T1UA 1T7QA 1NDFA 5KJSA 2FY5A 1XL7A 2I9DA 4EP9A 1DPCA 1SCZA 2RKVA 1C4TA 1CIAA 1EADA 4EPHA 3B2SA 2RKTA 2XHGA 2II3A 2BGHA 1DPDA 4JN5A 1NM8A 2FY3A 5KJUA 2FY2A 2II5A 2XR7A 1NOCB 5KJTA 3FP0A 5DUAA 2H3PA 4N72A 4G0BA 4G2MA 2E1UA 4G22A 2RCUA 1S5OA 1DPBA 2CLAA 1Q23A 5T3EA 1E2OA 3B30A 5DU9A 2VSQA 1EACA 4KE4A 3MAEA 4KECA 4HVMA 2II4A 1PD5A 2ZBAA 1XMDA 3CLAA 1EAAA 1EABA 2IHWA 5FALA 1L5AA 2JGPA 1T7NA 3U9FA 2FY4A 2E1VA 4EYWA 1CLAA 5KJVA 2H4TA 1EAEA 2FW3A 4JN3A 1QCAA 1Q6XA 2DEBA 5KJWA 5FANA 1Q9JA 1XMCA 1NDIA 2H3WA 1XL8A 4CLAA 1EAFA 2E1TA 1T7OA 2FYOA 3L60A 3U9BA 1NDBA 3FOTA 2H3UA
chains in the Genus database with same CATH topology
1T1UA 2H4TA 2FW3A 1T7QA 2VSQA 1NDFA 4JN3A 1Q6XA 2DEBA 2FY5A 4HVMA 3FP0A 5DUAA 4EP9A 2H3PA 1Q9JA 1NDIA 2H3WA 2RCUA 1L5AA 1S5OA 4EPHA 1T7OA 2FYOA 1T7NA 2JGPA 2XHGA 2FY4A 1NDBA 5T3EA 3FOTA 5DU9A 4JN5A 4EYWA 1NM8A 2FY3A 2H3UA 2FY2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T1U A;  2H4T A;  2FW3 A;  1T7Q A;  1NDF A;  1Q6X A;  2DEB A;  2FY5 A;  4EP9 A;  2H3P A;  1NDI A;  2H3W A;  2RCU A;  1S5O A;  4EPH A;  1T7O A;  2FYO A;  1T7N A;  2FY4 A;  1NDB A;  4EYW A;  1NM8 A;  2FY3 A;  2H3U A;  2FY2 A; 
#chains in the Genus database with same CATH topology
 1T1U A;  1T7Q A;  1NDF A;  5KJS A;  2FY5 A;  1XL7 A;  2I9D A;  4EP9 A;  1DPC A;  1SCZ A;  2RKV A;  1C4T A;  1CIA A;  1EAD A;  4EPH A;  3B2S A;  2RKT A;  2XHG A;  2II3 A;  2BGH A;  1DPD A;  4JN5 A;  1NM8 A;  2FY3 A;  5KJU A;  2FY2 A;  2II5 A;  2XR7 A;  1NOC B;  5KJT A;  3FP0 A;  5DUA A;  2H3P A;  4N72 A;  4G0B A;  4G2M A;  2E1U A;  4G22 A;  2RCU A;  1S5O A;  1DPB A;  2CLA A;  1Q23 A;  5T3E A;  1E2O A;  3B30 A;  5DU9 A;  2VSQ A;  1EAC A;  4KE4 A;  3MAE A;  4KEC A;  4HVM A;  2II4 A;  1PD5 A;  2ZBA A;  1XMD A;  3CLA A;  1EAA A;  1EAB A;  2IHW A;  5FAL A;  1L5A A;  2JGP A;  1T7N A;  3U9F A;  2FY4 A;  2E1V A;  4EYW A;  1CLA A;  5KJV A;  2H4T A;  1EAE A;  2FW3 A;  4JN3 A;  1QCA A;  1Q6X A;  2DEB A;  5KJW A;  5FAN A;  1Q9J A;  1XMC A;  1NDI A;  2H3W A;  1XL8 A;  4CLA A;  1EAF A;  2E1T A;  1T7O A;  2FYO A;  3L60 A;  3U9B A;  1NDB A;  3FOT A;  2H3U A; 
#chains in the Genus database with same CATH homology
 1T1U A;  2H4T A;  2FW3 A;  1T7Q A;  2VSQ A;  1NDF A;  4JN3 A;  1Q6X A;  2DEB A;  2FY5 A;  4HVM A;  3FP0 A;  5DUA A;  4EP9 A;  2H3P A;  1Q9J A;  1NDI A;  2H3W A;  2RCU A;  1L5A A;  1S5O A;  4EPH A;  1T7O A;  2FYO A;  1T7N A;  2JGP A;  2XHG A;  2FY4 A;  1NDB A;  5T3E A;  3FOT A;  5DU9 A;  4JN5 A;  4EYW A;  1NM8 A;  2FY3 A;  2H3U A;  2FY2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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