5DU9A

First condensation domain of the calcium-dependent antibiotic synthetase in complex with substrate analogue 2a
Total Genus 142
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
sequence length
444
structure length
427
Chain Sequence
b'SVRHGLTSAQHCVWLAQQLDPRGAHYRTGSCLEIDGPLDHAVLSRALRLTVAGTETLCSRFLTDEEGRPYRAYCPPAPVPYTPVLLRHIDLSGHEDPEGEAQRWMDRDRATPLPLDRPGLSSHALFTLGGGRHLYYLGVHHIVIDGTSMALFYERLAEVYRALRDGRAVPAAAFGDTDRMVAGEEAYRASARYERDRAYWTGLFTDRPEPVSLRALAPTVRSLGLPPERTEVLGRAAEATGAHWARVVIAGVAAFLHRTTGARDVVVSVPVTGRYGANARITPGMVSNRLPLRLAVRPGESFARVVETVSEAMSGLLAHSRFRGEDLDRELGGAGVSGPTVNVMPYIRPVDFGGPVGLMRSISSGPTTDLNIVLTGTPESGLRVDFEGNPQVYGGQDLTVLQERFVRFLAELAADPAATVDEVALLT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Chemical Probes Allow Structural Insight into the Condensation Reaction of Nonribosomal Peptide Synthetases.
pubmed doi rcsb
molecule keywords CDA peptide synthetase I
source organism Streptomyces coelicolor (strain atcc baa-471 / a3(2) / m145)
molecule tags Phosphopantetheine binding protein
total genus 142
structure length 427
sequence length 444
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-09-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 5du9A01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 5du9A02
3MAEA 2E1UA 1EABA 2II5A 1XL8A 2II4A 1C4TA 1EAAA 2I9DA 2IHWA 3FP0A 4N72A 4CLAA 2E1TA 4JN3A 5T3EA 5KJWA 3B2SA 1QCAA 1XMDA 1EADA 1E2OA 2XHGA 3FOTA 5DUAA 5KJTA 3U9FA 1XL7A 3L60A 4G0BA 1L5AA 4G22A 3B30A 1PD5A 2RKTA 1EAFA 1SCZA 2BGHA 1EACA 5FANA 5KJSA 2II3A 2CLAA 1Q23A 4KE4A 4G2MA 1DPDA 2E1VA 1NOCB 4KECA 2JGPA 1DPBA 4HVMA 5KJUA 1Q9JA 5KJVA 1CLAA 4JN5A 1XMCA 2XR7A 5FALA 3CLAA 5DU9A 2ZBAA 1CIAA 1EAEA 1DPCA 2RKVA 3U9BA 2VSQA
chains in the Genus database with same CATH superfamily
3MAEA 2E1UA 1DPCA 2IHWA 1E2OA 3FOTA 1XL7A 4G0BA 1NM8A 2DEBA 1Q23A 4G2MA 2E1VA 1S5OA 1NOCB 2JGPA 4HVMA 1CLAA 2FYOA 1T1UA 1T7OA 2II5A 2I9DA 1EADA 5DUAA 2FW3A 5KJTA 2FY2A 3U9FA 1NDFA 1PD5A 2RKTA 1EAFA 1SCZA 2II3A 2H3WA 1Q6XA 4KE4A 1DPDA 4EP9A 4KECA 1NDIA 1T7NA 1Q9JA 1XMCA 2H3PA 5FALA 1EAEA 2RCUA 2FY5A 2RKVA 1EABA 1XL8A 2II4A 1C4TA 3FP0A 4JN3A 5T3EA 5KJWA 3B2SA 1QCAA 4G22A 1T7QA 5FANA 2CLAA 2H4TA 5KJUA 2XR7A 5DU9A 1CIAA 1NDBA 3U9BA 5KJVA 4EPHA 1EAAA 2FY4A 2FY3A 4CLAA 4N72A 2E1TA 1XMDA 3L60A 1L5AA 3B30A 2BGHA 1EACA 5KJSA 1DPBA 2H3UA 4JN5A 3CLAA 4EYWA 2ZBAA 2XHGA 2VSQA
chains in the Genus database with same CATH topology
3MAEA 2E1UA 1DPCA 2IHWA 1E2OA 3FOTA 1XL7A 4G0BA 1NM8A 2DEBA 1Q23A 4G2MA 2E1VA 1S5OA 1NOCB 2JGPA 4HVMA 1CLAA 1T1UA 2FYOA 1T7OA 2II5A 2I9DA 1EADA 5DUAA 2FW3A 5KJTA 2FY2A 3U9FA 1NDFA 1PD5A 2RKTA 1EAFA 1SCZA 2II3A 2H3WA 4KE4A 1Q6XA 1DPDA 4EP9A 4KECA 1NDIA 1T7NA 1Q9JA 1XMCA 2H3PA 5FALA 1EAEA 2RCUA 2FY5A 2RKVA 1EABA 1XL8A 2II4A 1C4TA 3FP0A 4JN3A 5T3EA 5KJWA 3B2SA 1QCAA 4G22A 1T7QA 5FANA 2CLAA 2H4TA 5KJUA 2XR7A 5DU9A 1CIAA 1NDBA 3U9BA 5KJVA 4EPHA 1EAAA 2FY4A 4CLAA 2FY3A 4N72A 2E1TA 1XMDA 3L60A 1L5AA 3B30A 2BGHA 1EACA 5KJSA 1DPBA 2H3UA 4JN5A 3CLAA 4EYWA 2ZBAA 2XHGA 2VSQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MAE A;  2E1U A;  1EAB A;  2II5 A;  1XL8 A;  2II4 A;  1C4T A;  1EAA A;  2I9D A;  2IHW A;  3FP0 A;  4N72 A;  4CLA A;  2E1T A;  4JN3 A;  5T3E A;  5KJW A;  3B2S A;  1QCA A;  1XMD A;  1EAD A;  1E2O A;  2XHG A;  3FOT A;  5DUA A;  5KJT A;  3U9F A;  1XL7 A;  3L60 A;  4G0B A;  1L5A A;  4G22 A;  3B30 A;  1PD5 A;  2RKT A;  1EAF A;  1SCZ A;  2BGH A;  1EAC A;  5FAN A;  5KJS A;  2II3 A;  2CLA A;  1Q23 A;  4KE4 A;  4G2M A;  1DPD A;  2E1V A;  1NOC B;  4KEC A;  2JGP A;  1DPB A;  4HVM A;  5KJU A;  1Q9J A;  5KJV A;  1CLA A;  4JN5 A;  1XMC A;  2XR7 A;  5FAL A;  3CLA A;  5DU9 A;  2ZBA A;  1CIA A;  1EAE A;  1DPC A;  2RKV A;  3U9B A;  2VSQ A; 
#chains in the Genus database with same CATH topology
 3MAE A;  2E1U A;  1DPC A;  2IHW A;  1E2O A;  3FOT A;  1XL7 A;  4G0B A;  1NM8 A;  2DEB A;  1Q23 A;  4G2M A;  2E1V A;  1S5O A;  1NOC B;  2JGP A;  4HVM A;  1CLA A;  2FYO A;  1T1U A;  1T7O A;  2II5 A;  2I9D A;  1EAD A;  5DUA A;  2FW3 A;  5KJT A;  2FY2 A;  3U9F A;  1NDF A;  1PD5 A;  2RKT A;  1EAF A;  1SCZ A;  2II3 A;  2H3W A;  1Q6X A;  4KE4 A;  1DPD A;  4EP9 A;  4KEC A;  1NDI A;  1T7N A;  1Q9J A;  1XMC A;  2H3P A;  5FAL A;  1EAE A;  2RCU A;  2FY5 A;  2RKV A;  1EAB A;  1XL8 A;  2II4 A;  1C4T A;  3FP0 A;  4JN3 A;  5T3E A;  5KJW A;  3B2S A;  1QCA A;  4G22 A;  1T7Q A;  5FAN A;  2CLA A;  2H4T A;  5KJU A;  2XR7 A;  5DU9 A;  1CIA A;  1NDB A;  3U9B A;  5KJV A;  4EPH A;  1EAA A;  2FY4 A;  2FY3 A;  4CLA A;  4N72 A;  2E1T A;  1XMD A;  3L60 A;  1L5A A;  3B30 A;  2BGH A;  1EAC A;  5KJS A;  1DPB A;  2H3U A;  4JN5 A;  3CLA A;  4EYW A;  2ZBA A;  2XHG A;  2VSQ A; 
#chains in the Genus database with same CATH homology
 3MAE A;  2E1U A;  1DPC A;  2IHW A;  1E2O A;  3FOT A;  1XL7 A;  4G0B A;  1NM8 A;  2DEB A;  1Q23 A;  4G2M A;  2E1V A;  1S5O A;  1NOC B;  2JGP A;  4HVM A;  1CLA A;  1T1U A;  2FYO A;  1T7O A;  2II5 A;  2I9D A;  1EAD A;  5DUA A;  2FW3 A;  5KJT A;  2FY2 A;  3U9F A;  1NDF A;  1PD5 A;  2RKT A;  1EAF A;  1SCZ A;  2II3 A;  2H3W A;  4KE4 A;  1Q6X A;  1DPD A;  4EP9 A;  4KEC A;  1NDI A;  1T7N A;  1Q9J A;  1XMC A;  2H3P A;  5FAL A;  1EAE A;  2RCU A;  2FY5 A;  2RKV A;  1EAB A;  1XL8 A;  2II4 A;  1C4T A;  3FP0 A;  4JN3 A;  5T3E A;  5KJW A;  3B2S A;  1QCA A;  4G22 A;  1T7Q A;  5FAN A;  2CLA A;  2H4T A;  5KJU A;  2XR7 A;  5DU9 A;  1CIA A;  1NDB A;  3U9B A;  5KJV A;  4EPH A;  1EAA A;  2FY4 A;  4CLA A;  2FY3 A;  4N72 A;  2E1T A;  1XMD A;  3L60 A;  1L5A A;  3B30 A;  2BGH A;  1EAC A;  5KJS A;  1DPB A;  2H3U A;  4JN5 A;  3CLA A;  4EYW A;  2ZBA A;  2XHG A;  2VSQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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