5DU9A

First condensation domain of the calcium-dependent antibiotic synthetase in complex with substrate analogue 2a
Total Genus 142
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
sequence length
444
structure length
427
Chain Sequence
SVRHGLTSAQHCVWLAQQLDPRGAHYRTGSCLEIDGPLDHAVLSRALRLTVAGTETLCSRFLTDEEGRPYRAYCPPAPVPYTPVLLRHIDLSGHEDPEGEAQRWMDRDRATPLPLDRPGLSSHALFTLGGGRHLYYLGVHHIVIDGTSMALFYERLAEVYRALRDGRAVPAAAFGDTDRMVAGEEAYRASARYERDRAYWTGLFTDRPEPVSLRALAPTVRSLGLPPERTEVLGRAAEATGAHWARVVIAGVAAFLHRTTGARDVVVSVPVTGRYGANARITPGMVSNRLPLRLAVRPGESFARVVETVSEAMSGLLAHSRFRGEDLDRELGGAGVSGPTVNVMPYIRPVDFGGPVGLMRSISSGPTTDLNIVLTGTPESGLRVDFEGNPQVYGGQDLTVLQERFVRFLAELAADPAATVDEVALLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Phosphopantetheine binding protein
source organism Streptomyces coelicolor (strain atcc baa-471 / a3(2) / m145)
publication title Chemical Probes Allow Structural Insight into the Condensation Reaction of Nonribosomal Peptide Synthetases.
pubmed doi rcsb
molecule keywords CDA peptide synthetase I
total genus 142
structure length 427
sequence length 444
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-09-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 5du9A01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 5du9A02
5FANA 1EABA 4HVMA 2XR7A 4G22A 1Q23A 2ZBAA 2II3A 1EAAA 5DU9A 1CLAA 3B2SA 4G0BA 1NOCB 2RKTA 5KJSA 3CLAA 1EACA 2CLAA 2XHGA 3B30A 1EAEA 3L60A 1XMDA 2E1UA 2RKVA 1CIAA 4JN5A 4KECA 2BGHA 1DPCA 3MAEA 1L5AA 3FOTA 2JGPA 4JN3A 1XMCA 1DPDA 5T3EA 1QCAA 3U9BA 1Q9JA 2II5A 5DUAA 1E2OA 4CLAA 5KJVA 2I9DA 1XL7A 1XL8A 2VSQA 2E1VA 4KE4A 4N72A 2IHWA 1C4TA 1PD5A 1SCZA 2E1TA 4G2MA 3U9FA 2II4A 5KJWA 3FP0A 5KJUA 1EAFA 1DPBA 5KJTA 5FALA 1EADA
chains in the Genus database with same CATH superfamily
4EP9A 2XR7A 4G22A 1Q6XA 2H4TA 1CLAA 3B2SA 4G0BA 2FY3A 1S5OA 5KJSA 1EACA 2CLAA 4EPHA 1T7QA 2E1UA 4JN5A 1DPCA 3MAEA 3FOTA 1NDIA 1XMCA 1NDFA 5DUAA 2H3PA 4CLAA 1XL8A 2E1VA 1PD5A 2II4A 1DPBA 2DEBA 4HVMA 1T7NA 1Q23A 5DU9A 2FW3A 2RCUA 2RKVA 4KECA 2JGPA 1DPDA 5T3EA 1QCAA 1E2OA 5KJVA 2I9DA 1XL7A 4N72A 1SCZA 2E1TA 5KJTA 5FALA 1T7OA 1EADA 1EABA 4EYWA 2II3A 1EAAA 1NOCB 3CLAA 3L60A 1CIAA 2BGHA 1L5AA 3U9BA 1Q9JA 1NM8A 4KE4A 2FY5A 1C4TA 2IHWA 5KJWA 3FP0A 5KJUA 1EAFA 5FANA 2ZBAA 2RKTA 2XHGA 3B30A 1EAEA 1XMDA 2H3WA 1NDBA 4JN3A 2II5A 2FY4A 2VSQA 2H3UA 3U9FA 4G2MA 2FYOA 1T1UA 2FY2A
chains in the Genus database with same CATH topology
4EP9A 2XR7A 4G22A 1Q6XA 2H4TA 1CLAA 3B2SA 4G0BA 2FY3A 1S5OA 5KJSA 1EACA 2CLAA 4EPHA 1T7QA 2E1UA 4JN5A 1DPCA 3MAEA 3FOTA 1NDIA 1XMCA 1NDFA 5DUAA 2H3PA 4CLAA 1XL8A 2E1VA 1PD5A 2II4A 1DPBA 2DEBA 4HVMA 1T7NA 1Q23A 5DU9A 2FW3A 2RCUA 2RKVA 4KECA 2JGPA 1DPDA 5T3EA 1QCAA 1E2OA 5KJVA 2I9DA 1XL7A 4N72A 1SCZA 2E1TA 5KJTA 5FALA 1T7OA 1EADA 1EABA 4EYWA 2II3A 1EAAA 1NOCB 3CLAA 3L60A 1CIAA 2BGHA 1L5AA 3U9BA 1Q9JA 1NM8A 4KE4A 2IHWA 1C4TA 2FY5A 5KJWA 3FP0A 5KJUA 1EAFA 5FANA 2ZBAA 2RKTA 2XHGA 3B30A 1EAEA 1XMDA 2H3WA 4JN3A 1NDBA 2II5A 2FY4A 2VSQA 2H3UA 3U9FA 4G2MA 2FYOA 1T1UA 2FY2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FAN A;  1EAB A;  4HVM A;  2XR7 A;  4G22 A;  1Q23 A;  2ZBA A;  2II3 A;  1EAA A;  5DU9 A;  1CLA A;  3B2S A;  4G0B A;  1NOC B;  2RKT A;  5KJS A;  3CLA A;  1EAC A;  2CLA A;  2XHG A;  3B30 A;  1EAE A;  3L60 A;  1XMD A;  2E1U A;  2RKV A;  1CIA A;  4JN5 A;  4KEC A;  2BGH A;  1DPC A;  3MAE A;  1L5A A;  3FOT A;  2JGP A;  4JN3 A;  1XMC A;  1DPD A;  5T3E A;  1QCA A;  3U9B A;  1Q9J A;  2II5 A;  5DUA A;  1E2O A;  4CLA A;  5KJV A;  2I9D A;  1XL7 A;  1XL8 A;  2VSQ A;  2E1V A;  4KE4 A;  4N72 A;  2IHW A;  1C4T A;  1PD5 A;  1SCZ A;  2E1T A;  4G2M A;  3U9F A;  2II4 A;  5KJW A;  3FP0 A;  5KJU A;  1EAF A;  1DPB A;  5KJT A;  5FAL A;  1EAD A; 
#chains in the Genus database with same CATH topology
 4EP9 A;  2XR7 A;  4G22 A;  1Q6X A;  2H4T A;  1CLA A;  3B2S A;  4G0B A;  2FY3 A;  1S5O A;  5KJS A;  1EAC A;  2CLA A;  4EPH A;  1T7Q A;  2E1U A;  4JN5 A;  1DPC A;  3MAE A;  3FOT A;  1NDI A;  1XMC A;  1NDF A;  5DUA A;  2H3P A;  4CLA A;  1XL8 A;  2E1V A;  1PD5 A;  2II4 A;  1DPB A;  2DEB A;  4HVM A;  1T7N A;  1Q23 A;  5DU9 A;  2FW3 A;  2RCU A;  2RKV A;  4KEC A;  2JGP A;  1DPD A;  5T3E A;  1QCA A;  1E2O A;  5KJV A;  2I9D A;  1XL7 A;  4N72 A;  1SCZ A;  2E1T A;  5KJT A;  5FAL A;  1T7O A;  1EAD A;  1EAB A;  4EYW A;  2II3 A;  1EAA A;  1NOC B;  3CLA A;  3L60 A;  1CIA A;  2BGH A;  1L5A A;  3U9B A;  1Q9J A;  1NM8 A;  4KE4 A;  2FY5 A;  1C4T A;  2IHW A;  5KJW A;  3FP0 A;  5KJU A;  1EAF A;  5FAN A;  2ZBA A;  2RKT A;  2XHG A;  3B30 A;  1EAE A;  1XMD A;  2H3W A;  1NDB A;  4JN3 A;  2II5 A;  2FY4 A;  2VSQ A;  2H3U A;  3U9F A;  4G2M A;  2FYO A;  1T1U A;  2FY2 A; 
#chains in the Genus database with same CATH homology
 4EP9 A;  2XR7 A;  4G22 A;  1Q6X A;  2H4T A;  1CLA A;  3B2S A;  4G0B A;  2FY3 A;  1S5O A;  5KJS A;  1EAC A;  2CLA A;  4EPH A;  1T7Q A;  2E1U A;  4JN5 A;  1DPC A;  3MAE A;  3FOT A;  1NDI A;  1XMC A;  1NDF A;  5DUA A;  2H3P A;  4CLA A;  1XL8 A;  2E1V A;  1PD5 A;  2II4 A;  1DPB A;  2DEB A;  4HVM A;  1T7N A;  1Q23 A;  5DU9 A;  2FW3 A;  2RCU A;  2RKV A;  4KEC A;  2JGP A;  1DPD A;  5T3E A;  1QCA A;  1E2O A;  5KJV A;  2I9D A;  1XL7 A;  4N72 A;  1SCZ A;  2E1T A;  5KJT A;  5FAL A;  1T7O A;  1EAD A;  1EAB A;  4EYW A;  2II3 A;  1EAA A;  1NOC B;  3CLA A;  3L60 A;  1CIA A;  2BGH A;  1L5A A;  3U9B A;  1Q9J A;  1NM8 A;  4KE4 A;  2IHW A;  1C4T A;  2FY5 A;  5KJW A;  3FP0 A;  5KJU A;  1EAF A;  5FAN A;  2ZBA A;  2RKT A;  2XHG A;  3B30 A;  1EAE A;  1XMD A;  2H3W A;  4JN3 A;  1NDB A;  2II5 A;  2FY4 A;  2VSQ A;  2H3U A;  3U9F A;  4G2M A;  2FYO A;  1T1U A;  2FY2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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