1T1UA

Structural insights and functional implications of choline acetyltransferase
Total Genus 221
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
221
sequence length
597
structure length
597
Chain Sequence
ELDLPKLPVPPLQQTLATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGETLQEKLLERQEKTANWVSEYWLNDMYLNNRLALPVNSSPAVIFARQHFQDTNDQLRFAACLISGVLSYKTLLDSHSLPTDWAKGQLSGQPLCMKQYYRLFSSYRLPGHTQDTLVAQKSSIMPEPEHVIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLDMIERCICLVCLDGPGTGELSDTHRALQLLHGGGCSLNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHLLKHMMTSNKKLVRADSVSELPAPRRLRWKCSPETQGHLASSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQKYSPDGFIQVALQLAYYRLYQRLVPTYESASIRRFQEGRVDNIRSATPEALAFVQAMTDHKAAMPASEKLQLLQTAMQAQTEYTVMAITGMAIDNHLLALRELARDLCKEPPEMFMDETYLMSNRFVLSTSQVPTTMEMFCCYGPVVPNGYGACYNPQPEAITFCISSFHSCKETSSVEFAEAVGASLVDMRDLCSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
source organism Rattus norvegicus
publication title Structural insights and functional implications of choline acetyltransferase
pubmed doi rcsb
molecule keywords Choline O-acetyltransferase
total genus 221
structure length 597
sequence length 597
ec nomenclature ec 2.3.1.6: Choline O-acetyltransferase.
pdb deposition date 2004-04-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1t1uA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1t1uA02
2FY4A 1T7NA 2RCUA 2FYOA 1T7QA 2FY5A 1NM8A 1Q6XA 4EPHA 4EP9A 1S5OA 1NDIA 1T7OA 1NDBA 2H3UA 2DEBA 1NDFA 2H4TA 2FY2A 2H3PA 2FY3A 2H3WA 2FW3A 1T1UA 4EYWA
chains in the Genus database with same CATH superfamily
2I9DA 1XMDA 1EAAA 2FYOA 2II4A 3FOTA 1Q23A 2II3A 4CLAA 2E1VA 5DUAA 4EP9A 4JN3A 1QCAA 2H3UA 1XL7A 3CLAA 2II5A 1NOCB 1EACA 1Q9JA 4G2MA 2FW3A 1XMCA 5KJWA 1T1UA 5KJTA 3MAEA 2FY4A 5FANA 1T7NA 5T3EA 2IHWA 2XR7A 1Q6XA 1EAFA 3FP0A 4EPHA 1CIAA 1XL8A 1NDBA 1L5AA 2E1UA 1NDFA 2FY2A 4JN5A 4N72A 1EADA 2VSQA 2JGPA 4EYWA 1PD5A 5KJVA 4HVMA 5FALA 1EAEA 2RCUA 1DPBA 2XHGA 1T7QA 5KJSA 2FY5A 1NM8A 1CLAA 2RKTA 3L60A 1E2OA 2E1TA 2H4TA 4G0BA 2CLAA 4KE4A 4G22A 3U9BA 3B30A 3U9FA 1EABA 1SCZA 4KECA 2RKVA 2ZBAA 2BGHA 1DPDA 1S5OA 1NDIA 5DU9A 1T7OA 2DEBA 5KJUA 3B2SA 2H3PA 2FY3A 2H3WA 1DPCA 1C4TA
chains in the Genus database with same CATH topology
2FY4A 1T7NA 4HVMA 5T3EA 2RCUA 2XHGA 2FYOA 1T7QA 2FY5A 1NM8A 3FOTA 1Q6XA 5DUAA 3FP0A 4EPHA 4EP9A 1S5OA 1NDIA 5DU9A 4JN3A 1T7OA 1NDBA 1L5AA 2H3UA 2DEBA 1NDFA 2H4TA 2FY2A 4JN5A 2H3PA 2FY3A 2H3WA 1Q9JA 2VSQA 2FW3A 2JGPA 1T1UA 4EYWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FY4 A;  1T7N A;  2RCU A;  2FYO A;  1T7Q A;  2FY5 A;  1NM8 A;  1Q6X A;  4EPH A;  4EP9 A;  1S5O A;  1NDI A;  1T7O A;  1NDB A;  2H3U A;  2DEB A;  1NDF A;  2H4T A;  2FY2 A;  2H3P A;  2FY3 A;  2H3W A;  2FW3 A;  1T1U A;  4EYW A; 
#chains in the Genus database with same CATH topology
 2I9D A;  1XMD A;  1EAA A;  2FYO A;  2II4 A;  3FOT A;  1Q23 A;  2II3 A;  4CLA A;  2E1V A;  5DUA A;  4EP9 A;  4JN3 A;  1QCA A;  2H3U A;  1XL7 A;  3CLA A;  2II5 A;  1NOC B;  1EAC A;  1Q9J A;  4G2M A;  2FW3 A;  1XMC A;  5KJW A;  1T1U A;  5KJT A;  3MAE A;  2FY4 A;  5FAN A;  1T7N A;  5T3E A;  2IHW A;  2XR7 A;  1Q6X A;  1EAF A;  3FP0 A;  4EPH A;  1CIA A;  1XL8 A;  1NDB A;  1L5A A;  2E1U A;  1NDF A;  2FY2 A;  4JN5 A;  4N72 A;  1EAD A;  2VSQ A;  2JGP A;  4EYW A;  1PD5 A;  5KJV A;  4HVM A;  5FAL A;  1EAE A;  2RCU A;  1DPB A;  2XHG A;  1T7Q A;  5KJS A;  2FY5 A;  1NM8 A;  1CLA A;  2RKT A;  3L60 A;  1E2O A;  2E1T A;  2H4T A;  4G0B A;  2CLA A;  4KE4 A;  4G22 A;  3U9B A;  3B30 A;  3U9F A;  1EAB A;  1SCZ A;  4KEC A;  2RKV A;  2ZBA A;  2BGH A;  1DPD A;  1S5O A;  1NDI A;  5DU9 A;  1T7O A;  2DEB A;  5KJU A;  3B2S A;  2H3P A;  2FY3 A;  2H3W A;  1DPC A;  1C4T A; 
#chains in the Genus database with same CATH homology
 2FY4 A;  1T7N A;  4HVM A;  5T3E A;  2RCU A;  2XHG A;  2FYO A;  1T7Q A;  2FY5 A;  1NM8 A;  3FOT A;  1Q6X A;  5DUA A;  3FP0 A;  4EPH A;  4EP9 A;  1S5O A;  1NDI A;  5DU9 A;  4JN3 A;  1T7O A;  1NDB A;  1L5A A;  2H3U A;  2DEB A;  1NDF A;  2H4T A;  2FY2 A;  4JN5 A;  2H3P A;  2FY3 A;  2H3W A;  1Q9J A;  2VSQ A;  2FW3 A;  2JGP A;  1T1U A;  4EYW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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