5KJSA

Crystal structure of arabidopsis thaliana hct
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
433
structure length
429
Chain Sequence
MKINIRDSTMVRPATETPITNLWNSNVDLVIPRFHTPSVYFYRPTGASNFFDPQVMKEALSKALVPFYPMAGRLKRDDDGRIEIDCNGAGVLFVVADTPSVIDDFGDFAPTLNLRQLIPEVDHSTGIHSFPLLVLQVTFFKCGGASLGVGMQHHAADGFSGLHFINTWSDMARGLDLTIPPFIDRTLLRARDPPQPAFHHVEYQPAPSMKIPLDPSKSGPENTTVSIFKLTRDQKAKSKEDGNTVSYSSYEMLAGHVWRSVGKARGLPNDQETKLYIATDGRSRLRPQLPPGYFGNVIFTATPLAVAGDLLSKPTWYAAGQIHDFLVRMDDNYLRSALDYLEMQPDLSALVRGAHTYKCPNLGITSWVRLPIYDADFGWGRPIFMGPGGIPYEGLSFVLPSPTNDGSLSVAIALQSEHMKLFEKFLFEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Shikimate O-hydroxycinnamoyltransferase
publication title Dynamic Conformational States Dictate Selectivity toward the Native Substrate in a Substrate-Permissive Acyltransferase.
pubmed doi rcsb
source organism Arabidopsis thaliana
molecule tags Transferase
total genus 109
structure length 429
sequence length 433
ec nomenclature ec 2.3.1.133: Shikimate O-hydroxycinnamoyltransferase.
pdb deposition date 2016-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 5kjsA02
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 5kjsA01
4KECA 3U9FA 1EACA 2E1TA 1DPCA 1Q23A 2E1UA 1EABA 1PD5A 1XL8A 5KJUA 1XL7A 4CLAA 3B2SA 3FP0A 4HVMA 2II3A 3B30A 1SCZA 2BGHA 1EAAA 2CLAA 2II5A 2VSQA 1EAFA 2JGPA 4G0BA 5FANA 5KJWA 4N72A 4KE4A 1Q9JA 1CIAA 1CLAA 2XR7A 1EADA 1C4TA 1DPBA 2RKVA 1XMCA 5KJVA 5KJSA 1QCAA 4JN5A 5KJTA 2XHGA 3CLAA 3FOTA 5DUAA 5DU9A 1L5AA 3MAEA 1NOCB 2IHWA 1EAEA 3U9BA 2I9DA 1XMDA 2E1VA 5T3EA 2RKTA 1DPDA 2II4A 3L60A 4G2MA 5FALA 2ZBAA 4G22A 1E2OA 4JN3A
chains in the Genus database with same CATH superfamily
3U9FA 2E1TA 2FY5A 2E1UA 1T7NA 4HVMA 2II3A 1SCZA 1S5OA 4N72A 4KE4A 2XR7A 2DEBA 4EP9A 1DPBA 5KJVA 2H3UA 3FOTA 1NOCB 3U9BA 2E1VA 2ZBAA 4G22A 1Q23A 3FP0A 2II5A 1EAAA 2CLAA 1EADA 2RKVA 1QCAA 4JN5A 2XHGA 5DU9A 3MAEA 1EAEA 2RKTA 4EPHA 2II4A 5FALA 3L60A 4JN3A 2H3PA 4CLAA 1EACA 1DPCA 1T7OA 1EABA 2H3WA 1XL7A 2FY4A 3B30A 4G0BA 2BGHA 5FANA 5KJWA 2VSQA 1CIAA 1CLAA 1XMCA 3CLAA 1NM8A 1XMDA 2FY2A 1E2OA 1T7QA 5KJUA 4KECA 1NDIA 2FW3A 2RCUA 1NDBA 1PD5A 1XL8A 4EYWA 5KJTA 3B2SA 1EAFA 2H4TA 2JGPA 1Q9JA 1NDFA 2FYOA 1C4TA 1Q6XA 5KJSA 5DUAA 1L5AA 2IHWA 2FY3A 2I9DA 5T3EA 1T1UA 1DPDA 4G2MA
chains in the Genus database with same CATH topology
4KECA 3U9FA 1EACA 2E1TA 1DPCA 1Q23A 2E1UA 1EABA 1PD5A 1XL8A 5KJUA 1XL7A 4CLAA 3B2SA 3FP0A 4HVMA 2II3A 3B30A 1SCZA 2BGHA 1EAAA 2CLAA 2II5A 2VSQA 1EAFA 2JGPA 4G0BA 5FANA 5KJWA 4N72A 4KE4A 1Q9JA 1CIAA 1CLAA 2XR7A 1EADA 1C4TA 1DPBA 2RKVA 1XMCA 5KJVA 5KJSA 1QCAA 4JN5A 5KJTA 2XHGA 3CLAA 3FOTA 5DUAA 5DU9A 1L5AA 3MAEA 1NOCB 2IHWA 1EAEA 3U9BA 2I9DA 1XMDA 2E1VA 5T3EA 2RKTA 1DPDA 2II4A 3L60A 4G2MA 5FALA 2ZBAA 4G22A 1E2OA 4JN3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KEC A;  3U9F A;  1EAC A;  2E1T A;  1DPC A;  1Q23 A;  2E1U A;  1EAB A;  1PD5 A;  1XL8 A;  5KJU A;  1XL7 A;  4CLA A;  3B2S A;  3FP0 A;  4HVM A;  2II3 A;  3B30 A;  1SCZ A;  2BGH A;  1EAA A;  2CLA A;  2II5 A;  2VSQ A;  1EAF A;  2JGP A;  4G0B A;  5FAN A;  5KJW A;  4N72 A;  4KE4 A;  1Q9J A;  1CIA A;  1CLA A;  2XR7 A;  1EAD A;  1C4T A;  1DPB A;  2RKV A;  1XMC A;  5KJV A;  5KJS A;  1QCA A;  4JN5 A;  5KJT A;  2XHG A;  3CLA A;  3FOT A;  5DUA A;  5DU9 A;  1L5A A;  3MAE A;  1NOC B;  2IHW A;  1EAE A;  3U9B A;  2I9D A;  1XMD A;  2E1V A;  5T3E A;  2RKT A;  1DPD A;  2II4 A;  3L60 A;  4G2M A;  5FAL A;  2ZBA A;  4G22 A;  1E2O A;  4JN3 A; 
#chains in the Genus database with same CATH topology
 3U9F A;  2E1T A;  2FY5 A;  2E1U A;  1T7N A;  4HVM A;  2II3 A;  1SCZ A;  1S5O A;  4N72 A;  4KE4 A;  2XR7 A;  2DEB A;  4EP9 A;  1DPB A;  5KJV A;  2H3U A;  3FOT A;  1NOC B;  3U9B A;  2E1V A;  2ZBA A;  4G22 A;  1Q23 A;  3FP0 A;  2II5 A;  1EAA A;  2CLA A;  1EAD A;  2RKV A;  1QCA A;  4JN5 A;  2XHG A;  5DU9 A;  3MAE A;  1EAE A;  2RKT A;  4EPH A;  2II4 A;  5FAL A;  3L60 A;  4JN3 A;  2H3P A;  4CLA A;  1EAC A;  1DPC A;  1T7O A;  1EAB A;  2H3W A;  1XL7 A;  2FY4 A;  3B30 A;  4G0B A;  2BGH A;  5FAN A;  5KJW A;  2VSQ A;  1CIA A;  1CLA A;  1XMC A;  3CLA A;  1NM8 A;  1XMD A;  2FY2 A;  1E2O A;  1T7Q A;  5KJU A;  4KEC A;  1NDI A;  2FW3 A;  2RCU A;  1NDB A;  1PD5 A;  1XL8 A;  4EYW A;  5KJT A;  3B2S A;  1EAF A;  2H4T A;  2JGP A;  1Q9J A;  1NDF A;  2FYO A;  1C4T A;  1Q6X A;  5KJS A;  5DUA A;  1L5A A;  2IHW A;  2FY3 A;  2I9D A;  5T3E A;  1T1U A;  1DPD A;  4G2M A; 
#chains in the Genus database with same CATH homology
 4KEC A;  3U9F A;  1EAC A;  2E1T A;  1DPC A;  1Q23 A;  2E1U A;  1EAB A;  1PD5 A;  1XL8 A;  5KJU A;  1XL7 A;  4CLA A;  3B2S A;  3FP0 A;  4HVM A;  2II3 A;  3B30 A;  1SCZ A;  2BGH A;  1EAA A;  2CLA A;  2II5 A;  2VSQ A;  1EAF A;  2JGP A;  4G0B A;  5FAN A;  5KJW A;  4N72 A;  4KE4 A;  1Q9J A;  1CIA A;  1CLA A;  2XR7 A;  1EAD A;  1C4T A;  1DPB A;  2RKV A;  1XMC A;  5KJV A;  5KJS A;  1QCA A;  4JN5 A;  5KJT A;  2XHG A;  3CLA A;  3FOT A;  5DUA A;  5DU9 A;  1L5A A;  3MAE A;  1NOC B;  2IHW A;  1EAE A;  3U9B A;  2I9D A;  1XMD A;  2E1V A;  5T3E A;  2RKT A;  1DPD A;  2II4 A;  3L60 A;  4G2M A;  5FAL A;  2ZBA A;  4G22 A;  1E2O A;  4JN3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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