5KJSA

Crystal structure of arabidopsis thaliana hct
Total Genus 109
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
433
structure length
429
Chain Sequence
MKINIRDSTMVRPATETPITNLWNSNVDLVIPRFHTPSVYFYRPTGASNFFDPQVMKEALSKALVPFYPMAGRLKRDDDGRIEIDCNGAGVLFVVADTPSVIDDFGDFAPTLNLRQLIPEVDHSTGIHSFPLLVLQVTFFKCGGASLGVGMQHHAADGFSGLHFINTWSDMARGLDLTIPPFIDRTLLRARDPPQPAFHHVEYQPAPSMKIPLDPSKSGPENTTVSIFKLTRDQKAKSKEDGNTVSYSSYEMLAGHVWRSVGKARGLPNDQETKLYIATDGRSRLRPQLPPGYFGNVIFTATPLAVAGDLLSKPTWYAAGQIHDFLVRMDDNYLRSALDYLEMQPDLSALVRGAHTYKCPNLGITSWVRLPIYDADFGWGRPIFMGPGGIPYEGLSFVLPSPTNDGSLSVAIALQSEHMKLFEKFLFEI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Shikimate O-hydroxycinnamoyltransferase
publication title Dynamic Conformational States Dictate Selectivity toward the Native Substrate in a Substrate-Permissive Acyltransferase.
pubmed doi rcsb
source organism Arabidopsis thaliana
total genus 109
structure length 429
sequence length 433
ec nomenclature ec 2.3.1.133: Shikimate O-hydroxycinnamoyltransferase.
pdb deposition date 2016-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 5kjsA02
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 5kjsA01
2II3A 5KJUA 1E2OA 5DU9A 1NOCB 5KJVA 1EABA 1XL8A 3U9FA 1SCZA 2IHWA 2ZBAA 2RKTA 2RKVA 3FP0A 5KJWA 3L60A 4JN3A 3U9BA 3B2SA 2II5A 2E1TA 4G2MA 4KECA 1EAFA 2XHGA 2II4A 1DPBA 1PD5A 2CLAA 4KE4A 1DPDA 5DUAA 4G0BA 4CLAA 1XMDA 5KJTA 1EADA 2VSQA 3CLAA 1DPCA 3MAEA 1CLAA 1Q9JA 5FALA 4G22A 1EAEA 4JN5A 5FANA 1XL7A 3B30A 1L5AA 5T3EA 2E1VA 2XR7A 1Q23A 1C4TA 1QCAA 3FOTA 1EAAA 1EACA 2I9DA 2JGPA 4HVMA 1XMCA 4N72A 5KJSA 2E1UA 2BGHA 1CIAA
chains in the Genus database with same CATH superfamily
5DU9A 1NOCB 1XL8A 2ZBAA 2RKTA 3L60A 3B2SA 2FY4A 2CLAA 4KE4A 5DUAA 1XMDA 2FY5A 2VSQA 3CLAA 1DPCA 2FYOA 2FW3A 1C4TA 2JGPA 1T7QA 2DEBA 2H3PA 1CIAA 2H3WA 1SCZA 2IHWA 2RKVA 3FP0A 4EYWA 5KJWA 3U9BA 4JN3A 2II5A 4KECA 1EAFA 1NM8A 2II4A 2XHGA 1T1UA 2H4TA 1PD5A 1CLAA 1Q9JA 4JN5A 5FANA 1L5AA 2FY2A 2XR7A 1QCAA 1EAAA 1NDBA 2I9DA 2BGHA 2II3A 1E2OA 5KJVA 1EABA 2RCUA 1T7NA 4G2MA 2E1TA 1DPDA 4CLAA 5KJTA 3MAEA 1EADA 1Q6XA 1T7OA 1S5OA 2FY3A 1XL7A 3B30A 1NDFA 3FOTA 4EPHA 1XMCA 4N72A 5KJSA 2E1UA 5KJUA 3U9FA 4EP9A 1DPBA 4G0BA 5FALA 4G22A 1EAEA 5T3EA 2E1VA 1NDIA 1Q23A 1EACA 4HVMA 2H3UA
chains in the Genus database with same CATH topology
2II3A 5KJUA 1E2OA 5DU9A 1NOCB 5KJVA 1EABA 1XL8A 3U9FA 1SCZA 2IHWA 2ZBAA 2RKTA 2RKVA 3FP0A 5KJWA 3L60A 4JN3A 3U9BA 3B2SA 2II5A 2E1TA 4G2MA 4KECA 1EAFA 2XHGA 2II4A 1DPBA 1PD5A 2CLAA 4KE4A 1DPDA 5DUAA 4G0BA 4CLAA 1XMDA 5KJTA 1EADA 2VSQA 3CLAA 1DPCA 3MAEA 1CLAA 1Q9JA 5FALA 4G22A 1EAEA 4JN5A 5FANA 1XL7A 3B30A 1L5AA 5T3EA 2E1VA 2XR7A 1Q23A 1C4TA 1QCAA 3FOTA 1EAAA 1EACA 2I9DA 2JGPA 4HVMA 1XMCA 4N72A 5KJSA 2E1UA 2BGHA 1CIAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2II3 A;  5KJU A;  1E2O A;  5DU9 A;  1NOC B;  5KJV A;  1EAB A;  1XL8 A;  3U9F A;  1SCZ A;  2IHW A;  2ZBA A;  2RKT A;  2RKV A;  3FP0 A;  5KJW A;  3L60 A;  4JN3 A;  3U9B A;  3B2S A;  2II5 A;  2E1T A;  4G2M A;  4KEC A;  1EAF A;  2XHG A;  2II4 A;  1DPB A;  1PD5 A;  2CLA A;  4KE4 A;  1DPD A;  5DUA A;  4G0B A;  4CLA A;  1XMD A;  5KJT A;  1EAD A;  2VSQ A;  3CLA A;  1DPC A;  3MAE A;  1CLA A;  1Q9J A;  5FAL A;  4G22 A;  1EAE A;  4JN5 A;  5FAN A;  1XL7 A;  3B30 A;  1L5A A;  5T3E A;  2E1V A;  2XR7 A;  1Q23 A;  1C4T A;  1QCA A;  3FOT A;  1EAA A;  1EAC A;  2I9D A;  2JGP A;  4HVM A;  1XMC A;  4N72 A;  5KJS A;  2E1U A;  2BGH A;  1CIA A; 
#chains in the Genus database with same CATH topology
 5DU9 A;  1NOC B;  1XL8 A;  2ZBA A;  2RKT A;  3L60 A;  3B2S A;  2FY4 A;  2CLA A;  4KE4 A;  5DUA A;  1XMD A;  2FY5 A;  2VSQ A;  3CLA A;  1DPC A;  2FYO A;  2FW3 A;  1C4T A;  2JGP A;  1T7Q A;  2DEB A;  2H3P A;  1CIA A;  2H3W A;  1SCZ A;  2IHW A;  2RKV A;  3FP0 A;  4EYW A;  5KJW A;  3U9B A;  4JN3 A;  2II5 A;  4KEC A;  1EAF A;  1NM8 A;  2II4 A;  2XHG A;  1T1U A;  2H4T A;  1PD5 A;  1CLA A;  1Q9J A;  4JN5 A;  5FAN A;  1L5A A;  2FY2 A;  2XR7 A;  1QCA A;  1EAA A;  1NDB A;  2I9D A;  2BGH A;  2II3 A;  1E2O A;  5KJV A;  1EAB A;  2RCU A;  1T7N A;  4G2M A;  2E1T A;  1DPD A;  4CLA A;  5KJT A;  3MAE A;  1EAD A;  1Q6X A;  1T7O A;  1S5O A;  2FY3 A;  1XL7 A;  3B30 A;  1NDF A;  3FOT A;  4EPH A;  1XMC A;  4N72 A;  5KJS A;  2E1U A;  5KJU A;  3U9F A;  4EP9 A;  1DPB A;  4G0B A;  5FAL A;  4G22 A;  1EAE A;  5T3E A;  2E1V A;  1NDI A;  1Q23 A;  1EAC A;  4HVM A;  2H3U A; 
#chains in the Genus database with same CATH homology
 2II3 A;  5KJU A;  1E2O A;  5DU9 A;  1NOC B;  5KJV A;  1EAB A;  1XL8 A;  3U9F A;  1SCZ A;  2IHW A;  2ZBA A;  2RKT A;  2RKV A;  3FP0 A;  5KJW A;  3L60 A;  4JN3 A;  3U9B A;  3B2S A;  2II5 A;  2E1T A;  4G2M A;  4KEC A;  1EAF A;  2XHG A;  2II4 A;  1DPB A;  1PD5 A;  2CLA A;  4KE4 A;  1DPD A;  5DUA A;  4G0B A;  4CLA A;  1XMD A;  5KJT A;  1EAD A;  2VSQ A;  3CLA A;  1DPC A;  3MAE A;  1CLA A;  1Q9J A;  5FAL A;  4G22 A;  1EAE A;  4JN5 A;  5FAN A;  1XL7 A;  3B30 A;  1L5A A;  5T3E A;  2E1V A;  2XR7 A;  1Q23 A;  1C4T A;  1QCA A;  3FOT A;  1EAA A;  1EAC A;  2I9D A;  2JGP A;  4HVM A;  1XMC A;  4N72 A;  5KJS A;  2E1U A;  2BGH A;  1CIA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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