3U9BA

Structure of apo-cati
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
216
structure length
216
Chain Sequence
EKKITGYTTVDISQWHRKEHFEAFQSVAQCTYNQTVQLDITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Chloramphenicol acetyltransferase
publication title The structural basis for substrate versatility of chloramphenicol acetyltransferase CAT(I).
pubmed doi rcsb
source organism Escherichia coli
total genus 51
structure length 216
sequence length 216
chains with identical sequence B, C, D, E, F, G, H, I
ec nomenclature ec 2.3.1.28: Chloramphenicol O-acetyltransferase.
pdb deposition date 2011-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00302 CAT Chloramphenicol acetyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 3u9bA00
1Q23A 4G22A 2II5A 5DUAA 1EAAA 3FP0A 3B2SA 5FANA 4G0BA 1XL8A 1CLAA 2XR7A 3B30A 5DU9A 1E2OA 5T3EA 5KJVA 2RKVA 1XMDA 2II4A 4KE4A 3U9FA 2I9DA 2VSQA 3L60A 1CIAA 1SCZA 2CLAA 3U9BA 1EACA 1DPCA 1PD5A 1XL7A 1EAFA 2II3A 1EADA 4KECA 1DPBA 5KJTA 2E1UA 2E1TA 2JGPA 2IHWA 4G2MA 1QCAA 4N72A 1EAEA 1Q9JA 5KJUA 2E1VA 5KJWA 1C4TA 1L5AA 2BGHA 4JN5A 3MAEA 2XHGA 1XMCA 3FOTA 1NOCB 2ZBAA 3CLAA 1DPDA 2RKTA 5FALA 5KJSA 1EABA 4JN3A 4HVMA 4CLAA
chains in the Genus database with same CATH superfamily
2II5A 5DUAA 1EAAA 3FP0A 4EP9A 3B2SA 2II4A 4KE4A 2I9DA 1DPCA 2H3WA 2FY2A 1DPBA 4N72A 1EAEA 5KJUA 2E1VA 1L5AA 2ZBAA 1S5OA 2RKTA 2FYOA 4JN3A 1NDBA 4G22A 4G0BA 3B30A 5DU9A 1E2OA 5KJVA 1XMDA 2VSQA 3L60A 1T7QA 1CIAA 1PD5A 2DEBA 1NM8A 1EADA 4KECA 5KJTA 2FY3A 2IHWA 4G2MA 5KJWA 4EYWA 4JN5A 3MAEA 1DPDA 2FW3A 4HVMA 4CLAA 1T1UA 1Q6XA 1XL8A 1NDIA 2H3UA 2H3PA 5T3EA 2RKVA 3U9FA 1SCZA 1XL7A 1EAFA 2E1UA 2E1TA 2JGPA 1QCAA 1Q9JA 2BGHA 2RCUA 3FOTA 1NOCB 3CLAA 5KJSA 1EABA 1Q23A 5FANA 1T7OA 1CLAA 2H4TA 2XR7A 2FY5A 3U9BA 2CLAA 1EACA 1T7NA 2II3A 4EPHA 2FY4A 1C4TA 2XHGA 1XMCA 1NDFA 5FALA
chains in the Genus database with same CATH topology
1Q23A 4G22A 2II5A 5DUAA 1EAAA 3FP0A 3B2SA 5FANA 4G0BA 1XL8A 1CLAA 2XR7A 3B30A 5DU9A 1E2OA 5T3EA 5KJVA 2RKVA 1XMDA 2II4A 4KE4A 3U9FA 2I9DA 2VSQA 3L60A 1CIAA 1SCZA 2CLAA 3U9BA 1EACA 1DPCA 1PD5A 1XL7A 1EAFA 2II3A 1EADA 4KECA 1DPBA 5KJTA 2E1UA 2E1TA 2JGPA 2IHWA 4G2MA 1QCAA 4N72A 1EAEA 1Q9JA 5KJUA 2E1VA 5KJWA 1C4TA 1L5AA 2BGHA 4JN5A 3MAEA 2XHGA 1XMCA 3FOTA 1NOCB 2ZBAA 3CLAA 1DPDA 2RKTA 5FALA 5KJSA 1EABA 4JN3A 4HVMA 4CLAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q23 A;  4G22 A;  2II5 A;  5DUA A;  1EAA A;  3FP0 A;  3B2S A;  5FAN A;  4G0B A;  1XL8 A;  1CLA A;  2XR7 A;  3B30 A;  5DU9 A;  1E2O A;  5T3E A;  5KJV A;  2RKV A;  1XMD A;  2II4 A;  4KE4 A;  3U9F A;  2I9D A;  2VSQ A;  3L60 A;  1CIA A;  1SCZ A;  2CLA A;  3U9B A;  1EAC A;  1DPC A;  1PD5 A;  1XL7 A;  1EAF A;  2II3 A;  1EAD A;  4KEC A;  1DPB A;  5KJT A;  2E1U A;  2E1T A;  2JGP A;  2IHW A;  4G2M A;  1QCA A;  4N72 A;  1EAE A;  1Q9J A;  5KJU A;  2E1V A;  5KJW A;  1C4T A;  1L5A A;  2BGH A;  4JN5 A;  3MAE A;  2XHG A;  1XMC A;  3FOT A;  1NOC B;  2ZBA A;  3CLA A;  1DPD A;  2RKT A;  5FAL A;  5KJS A;  1EAB A;  4JN3 A;  4HVM A;  4CLA A; 
#chains in the Genus database with same CATH topology
 2II5 A;  5DUA A;  1EAA A;  3FP0 A;  4EP9 A;  3B2S A;  2II4 A;  4KE4 A;  2I9D A;  1DPC A;  2H3W A;  2FY2 A;  1DPB A;  4N72 A;  1EAE A;  5KJU A;  2E1V A;  1L5A A;  2ZBA A;  1S5O A;  2RKT A;  2FYO A;  4JN3 A;  1NDB A;  4G22 A;  4G0B A;  3B30 A;  5DU9 A;  1E2O A;  5KJV A;  1XMD A;  2VSQ A;  3L60 A;  1T7Q A;  1CIA A;  1PD5 A;  2DEB A;  1NM8 A;  1EAD A;  4KEC A;  5KJT A;  2FY3 A;  2IHW A;  4G2M A;  5KJW A;  4EYW A;  4JN5 A;  3MAE A;  1DPD A;  2FW3 A;  4HVM A;  4CLA A;  1T1U A;  1Q6X A;  1XL8 A;  1NDI A;  2H3U A;  2H3P A;  5T3E A;  2RKV A;  3U9F A;  1SCZ A;  1XL7 A;  1EAF A;  2E1U A;  2E1T A;  2JGP A;  1QCA A;  1Q9J A;  2BGH A;  2RCU A;  3FOT A;  1NOC B;  3CLA A;  5KJS A;  1EAB A;  1Q23 A;  5FAN A;  1T7O A;  1CLA A;  2H4T A;  2XR7 A;  2FY5 A;  3U9B A;  2CLA A;  1EAC A;  1T7N A;  2II3 A;  4EPH A;  2FY4 A;  1C4T A;  2XHG A;  1XMC A;  1NDF A;  5FAL A; 
#chains in the Genus database with same CATH homology
 1Q23 A;  4G22 A;  2II5 A;  5DUA A;  1EAA A;  3FP0 A;  3B2S A;  5FAN A;  4G0B A;  1XL8 A;  1CLA A;  2XR7 A;  3B30 A;  5DU9 A;  1E2O A;  5T3E A;  5KJV A;  2RKV A;  1XMD A;  2II4 A;  4KE4 A;  3U9F A;  2I9D A;  2VSQ A;  3L60 A;  1CIA A;  1SCZ A;  2CLA A;  3U9B A;  1EAC A;  1DPC A;  1PD5 A;  1XL7 A;  1EAF A;  2II3 A;  1EAD A;  4KEC A;  1DPB A;  5KJT A;  2E1U A;  2E1T A;  2JGP A;  2IHW A;  4G2M A;  1QCA A;  4N72 A;  1EAE A;  1Q9J A;  5KJU A;  2E1V A;  5KJW A;  1C4T A;  1L5A A;  2BGH A;  4JN5 A;  3MAE A;  2XHG A;  1XMC A;  3FOT A;  1NOC B;  2ZBA A;  3CLA A;  1DPD A;  2RKT A;  5FAL A;  5KJS A;  1EAB A;  4JN3 A;  4HVM A;  4CLA A; 
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similar chains in the Genus database (?% sequence similarity)
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