1XL7A

Crystal structure of mouse carnitine octanoyltransferase
Total Genus 206
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
206
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
molecule keywords Peroxisomal carnitine O-octanoyltransferase
total genus 206
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xl7A01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xl7A03
2RKVA 5FANA 2BGHA 1E2OA 2E1TA 2II3A 2IHWA 1XL8A 2VSQA 4KECA 5KJWA 2RKTA 5DU9A 1QCAA 2JGPA 1DPCA 3L60A 4G22A 4JN3A 1XL7A 1EACA 1EAAA 1Q23A 1SCZA 1C4TA 5KJTA 3FP0A 5T3EA 1NOCB 1DPDA 5KJVA 4G2MA 5KJUA 1CIAA 3B30A 5KJSA 5DUAA 2E1UA 1L5AA 1CLAA 2XR7A 3CLAA 1XMDA 1DPBA 1EABA 1EADA 1EAEA 2XHGA 2ZBAA 4CLAA 4HVMA 4G0BA 1Q9JA 2I9DA 4KE4A 4N72A 3MAEA 4JN5A 2II5A 3U9FA 1XMCA 5FALA 3B2SA 3U9BA 1EAFA 2CLAA 1PD5A 3FOTA 2II4A 2E1VA
chains in the Genus database with same CATH superfamily
4ADMA 2E1TA 2II3A 2VSQA 3UNVA 2FY2A 5DU9A 4NLEA 3L60A 4JN3A 2QGAB 1XL7A 1EACA 5F92A 2O78A 2E9FA 1DPDA 2RJSA 5KJVA 2PFMA 2VSFA 2DEBA 1NM8A 1L5AA 1K7WA 1U16A 2XR7A 1DOFA 1DPBA 1EADA 1EAEA 2XHGA 2FY4A 2O7DA 2H4TA 4N72A 5FALA 3R6QA 3QBPA 1EAFA 1GKJA 4C5UA 4HGVA 1YISA 4EFCA 2E1VA 4EPHA 2NYNA 2FY5A 2BGHA 1T6JA 1T6PA 1XL8A 4KECA 3E04A 4FLCA 5KJWA 1NDBA 1FURA 1B8FA 2JGPA 1DCNA 1K62A 2NYFA 1DPCA 2FYOA 4G22A 1GK3A 1FUPA 4MX2A 1EAAA 1C4TA 5KJTA 2PTRA 5F91A 1CIAA 1AUWA 5KJSA 1TJWA 3R6VA 2E1UA 1GK2A 4EEIA 1YFMA 3TV2A 1KQ7A 2H3WA 3CLAA 4ADLA 1EABA 1GKMA 3CRW1 4C5RA 1S5OA 4APAA 2ZBAA 4HVMA 2FW3A 2I9DA 3U9FA 3KDZA 3BHGA 3U9BA 2O7EA 2VD6A 1PD5A 5HW2A 3RRPA 1C3UA 2RKVA 1HY0A 5FANA 4V2QA 3CZOA 1TJ7A 2VL7A 3GTDA 1TJVA 4APBA 2H3UA 1T7OA 2OHYA 3KDYA 2HVGA 4BAAA 2X75A 1Q5NA 5KJUA 1J3UA 2YIIA 5T3EA 1Q6XA 2PTSA 3B30A 5DUAA 1NDIA 3OCFA 1FUOA 4EYWA 3RD8A 3MAEA 2O7FA 4C6GA 2II5A 1XMCA 1TJUA 1VDKA 2CLAA 2O7BA 3FOTA 3CRVA 3OCEA 2FUSA 2II4A 1T1UA 3NO9A 2RJRA 3NZ4A 1E2OA 2FY3A 1EB4A 1FUQA 2IHWA 1HY1A 2RKTA 3R6YA 1QCAA 5D6BA 1U15A 4C5SA 4EP9A 1SCZA 1Q23A 3FP0A 1NOCB 4G2MA 4V2RA 1T7NA 4FFXA 5EYTA 2PTQA 1YFEA 1CLAA 3C8TA 1XWOA 1XMDA 2J91A 1Y2MA 4CLAA 4NSLA 4BABA 1Q9JA 4CQ5A 1RE5A 1W27A 4G0BA 4JN5A 4KE4A 2O6YA 5EYVA 4A15A 2QVEA 1NDFA 1T7QA 3B2SA 1I0AA 1JSWA 5H8WA 2RCUA 3GZHA 2H3PA 1C3CA
chains in the Genus database with same CATH topology
2RKVA 5FANA 2BGHA 1E2OA 2E1TA 2II3A 2IHWA 1XL8A 2VSQA 4KECA 5KJWA 2RKTA 5DU9A 1QCAA 2VL7A 4NLEA 2JGPA 1DPCA 3L60A 4G22A 4JN3A 1XL7A 1EACA 1EAAA 1Q23A 1SCZA 2E9FA 1C4TA 3FP0A 5T3EA 1NOCB 1DPDA 5KJVA 4G2MA 5KJTA 5KJUA 1CIAA 3B30A 2VSFA 5KJSA 5DUAA 2E1UA 1L5AA 1CLAA 2XR7A 3CLAA 1XMDA 1DPBA 1EABA 1EADA 1EAEA 3CRW1 2XHGA 2ZBAA 4CLAA 4G0BA 1Q9JA 2I9DA 4HVMA 4KE4A 4N72A 3MAEA 4JN5A 2II5A 3U9FA 1XMCA 4A15A 5FALA 3B2SA 3U9BA 5H8WA 1EAFA 2CLAA 1PD5A 3FOTA 3CRVA 2II4A 2E1VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RKV A;  5FAN A;  2BGH A;  1E2O A;  2E1T A;  2II3 A;  2IHW A;  1XL8 A;  2VSQ A;  4KEC A;  5KJW A;  2RKT A;  5DU9 A;  1QCA A;  2JGP A;  1DPC A;  3L60 A;  4G22 A;  4JN3 A;  1XL7 A;  1EAC A;  1EAA A;  1Q23 A;  1SCZ A;  1C4T A;  5KJT A;  3FP0 A;  5T3E A;  1NOC B;  1DPD A;  5KJV A;  4G2M A;  5KJU A;  1CIA A;  3B30 A;  5KJS A;  5DUA A;  2E1U A;  1L5A A;  1CLA A;  2XR7 A;  3CLA A;  1XMD A;  1DPB A;  1EAB A;  1EAD A;  1EAE A;  2XHG A;  2ZBA A;  4CLA A;  4HVM A;  4G0B A;  1Q9J A;  2I9D A;  4KE4 A;  4N72 A;  3MAE A;  4JN5 A;  2II5 A;  3U9F A;  1XMC A;  5FAL A;  3B2S A;  3U9B A;  1EAF A;  2CLA A;  1PD5 A;  3FOT A;  2II4 A;  2E1V A; 
#chains in the Genus database with same CATH topology
 4ADM A;  2E1T A;  2II3 A;  2VSQ A;  3UNV A;  2FY2 A;  5DU9 A;  4NLE A;  3L60 A;  4JN3 A;  2QGA B;  1XL7 A;  1EAC A;  5F92 A;  2O78 A;  2E9F A;  1DPD A;  2RJS A;  5KJV A;  2PFM A;  2VSF A;  2DEB A;  1NM8 A;  1L5A A;  1K7W A;  1U16 A;  2XR7 A;  1DOF A;  1DPB A;  1EAD A;  1EAE A;  2XHG A;  2FY4 A;  2O7D A;  2H4T A;  4N72 A;  5FAL A;  3R6Q A;  3QBP A;  1EAF A;  1GKJ A;  4C5U A;  4HGV A;  1YIS A;  4EFC A;  2E1V A;  4EPH A;  2NYN A;  2FY5 A;  2BGH A;  1T6J A;  1T6P A;  1XL8 A;  4KEC A;  3E04 A;  4FLC A;  5KJW A;  1NDB A;  1FUR A;  1B8F A;  2JGP A;  1DCN A;  1K62 A;  2NYF A;  1DPC A;  2FYO A;  4G22 A;  1GK3 A;  1FUP A;  4MX2 A;  1EAA A;  1C4T A;  5KJT A;  2PTR A;  5F91 A;  1CIA A;  1AUW A;  5KJS A;  1TJW A;  3R6V A;  2E1U A;  1GK2 A;  4EEI A;  1YFM A;  3TV2 A;  1KQ7 A;  2H3W A;  3CLA A;  4ADL A;  1EAB A;  1GKM A;  3CRW 1;  4C5R A;  1S5O A;  4APA A;  2ZBA A;  4HVM A;  2FW3 A;  2I9D A;  3U9F A;  3KDZ A;  3BHG A;  3U9B A;  2O7E A;  2VD6 A;  1PD5 A;  5HW2 A;  3RRP A;  1C3U A;  2RKV A;  1HY0 A;  5FAN A;  4V2Q A;  3CZO A;  1TJ7 A;  2VL7 A;  3GTD A;  1TJV A;  4APB A;  2H3U A;  1T7O A;  2OHY A;  3KDY A;  2HVG A;  4BAA A;  2X75 A;  1Q5N A;  5KJU A;  1J3U A;  2YII A;  5T3E A;  1Q6X A;  2PTS A;  3B30 A;  5DUA A;  1NDI A;  3OCF A;  1FUO A;  4EYW A;  3RD8 A;  3MAE A;  2O7F A;  4C6G A;  2II5 A;  1XMC A;  1TJU A;  1VDK A;  2CLA A;  2O7B A;  3FOT A;  3CRV A;  3OCE A;  2FUS A;  2II4 A;  1T1U A;  3NO9 A;  2RJR A;  3NZ4 A;  1E2O A;  2FY3 A;  1EB4 A;  1FUQ A;  2IHW A;  1HY1 A;  2RKT A;  3R6Y A;  1QCA A;  5D6B A;  1U15 A;  4C5S A;  4EP9 A;  1SCZ A;  1Q23 A;  3FP0 A;  1NOC B;  4G2M A;  4V2R A;  1T7N A;  4FFX A;  5EYT A;  2PTQ A;  1YFE A;  1CLA A;  3C8T A;  1XWO A;  1XMD A;  2J91 A;  1Y2M A;  4CLA A;  4NSL A;  4BAB A;  1Q9J A;  4CQ5 A;  1RE5 A;  1W27 A;  4G0B A;  4JN5 A;  4KE4 A;  2O6Y A;  5EYV A;  4A15 A;  2QVE A;  1NDF A;  1T7Q A;  3B2S A;  1I0A A;  1JSW A;  5H8W A;  2RCU A;  3GZH A;  2H3P A;  1C3C A; 
#chains in the Genus database with same CATH homology
 2RKV A;  5FAN A;  2BGH A;  1E2O A;  2E1T A;  2II3 A;  2IHW A;  1XL8 A;  2VSQ A;  4KEC A;  5KJW A;  2RKT A;  5DU9 A;  1QCA A;  2VL7 A;  4NLE A;  2JGP A;  1DPC A;  3L60 A;  4G22 A;  4JN3 A;  1XL7 A;  1EAC A;  1EAA A;  1Q23 A;  1SCZ A;  2E9F A;  1C4T A;  3FP0 A;  5T3E A;  1NOC B;  1DPD A;  5KJV A;  4G2M A;  5KJT A;  5KJU A;  1CIA A;  3B30 A;  2VSF A;  5KJS A;  5DUA A;  2E1U A;  1L5A A;  1CLA A;  2XR7 A;  3CLA A;  1XMD A;  1DPB A;  1EAB A;  1EAD A;  1EAE A;  3CRW 1;  2XHG A;  2ZBA A;  4CLA A;  4G0B A;  1Q9J A;  2I9D A;  4HVM A;  4KE4 A;  4N72 A;  3MAE A;  4JN5 A;  2II5 A;  3U9F A;  1XMC A;  4A15 A;  5FAL A;  3B2S A;  3U9B A;  5H8W A;  1EAF A;  2CLA A;  1PD5 A;  3FOT A;  3CRV A;  2II4 A;  2E1V A; 
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