1XL7A

Crystal structure of mouse carnitine octanoyltransferase
Total Genus 206
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
206
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
molecule keywords Peroxisomal carnitine O-octanoyltransferase
total genus 206
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xl7A01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xl7A03
2IHWA 2VSQA 3MAEA 4G0BA 3FP0A 4G22A 4KE4A 5DUAA 3L60A 1EACA 5KJVA 5KJUA 1DPCA 4JN3A 1EAFA 1EAAA 3B30A 1C4TA 1PD5A 2E1TA 5T3EA 3U9BA 1CLAA 1XL7A 5DU9A 2CLAA 3B2SA 5FALA 3FOTA 1EAEA 1NOCB 1SCZA 4HVMA 1Q23A 2II3A 2RKVA 4G2MA 3U9FA 4KECA 1XMDA 5FANA 3CLAA 2RKTA 2E1VA 4N72A 2I9DA 1DPBA 1Q9JA 5KJWA 2II5A 1XMCA 2XR7A 1L5AA 4CLAA 2BGHA 5KJTA 5KJSA 2II4A 2JGPA 1EADA 1EABA 4JN5A 2XHGA 1QCAA 1E2OA 2ZBAA 2E1UA 1CIAA 1XL8A 1DPDA
chains in the Genus database with same CATH superfamily
2IHWA 2VSQA 4G0BA 4ADLA 2PTQA 5KJVA 1DOFA 2FY5A 4JN3A 1EAAA 2FW3A 5T3EA 2VL7A 5DU9A 2O78A 1KQ7A 4APAA 3FOTA 4BABA 1EAEA 1SCZA 1Q23A 2RKVA 5F92A 2FUSA 1T6PA 1HY0A 2O7FA 4C5UA 5KJWA 2II5A 5KJTA 1U16A 2H3WA 2RJRA 3UNVA 1EABA 4JN5A 1YFMA 2VSFA 1NDBA 2E1UA 3CZOA 3NZ4A 1DCNA 1XL8A 4NLEA 5EYTA 4KE4A 3MAEA 2O7EA 4C6GA 2FY2A 2YIIA 1EAFA 1YISA 1YFEA 2H4TA 1T6JA 1U15A 1W27A 3R6QA 2PFMA 1TJ7A 5D6BA 2H3UA 4HGVA 5FALA 1NOCB 2FY3A 4EEIA 4HVMA 5F91A 1FURA 3U9FA 2O6YA 1XMDA 3CRVA 1DPBA 4BAAA 3OCFA 1Q9JA 1Y2MA 1AUWA 2DEBA 1TJVA 4NSLA 2BGHA 2JGPA 2RCUA 3C8TA 1GKJA 2XHGA 4EPHA 1CIAA 1S5OA 4V2QA 3GZHA 1RE5A 1DPDA 2FY4A 3QBPA 5H8WA 4G22A 5DUAA 3FP0A 5EYVA 1NM8A 2OHYA 3KDZA 4C5SA 1DPCA 1TJUA 3B30A 1PD5A 4V2RA 1CLAA 1T7OA 1XL7A 1GK2A 3OCEA 3B2SA 2PTSA 2FYOA 1GKMA 1T7NA 2QGAB 1I0AA 1K7WA 3TV2A 4A15A 4KECA 3E04A 1XWOA 3CLAA 2E1VA 4N72A 1C3UA 3KDYA 2VD6A 1L5AA 4CLAA 2X75A 5KJSA 1FUQA 2NYFA 1J3UA 4FFXA 4FLCA 1K62A 3BHGA 1E2OA 1B8FA 1NDFA 1JSWA 2QVEA 1T7QA 4CQ5A 3R6YA 3L60A 1T1UA 2E9FA 1EACA 5KJUA 2NYNA 2RJSA 2H3PA 4MX2A 1C4TA 2E1TA 3U9BA 3GTDA 4EYWA 1TJWA 1FUPA 2O7BA 2CLAA 3RRPA 3NO9A 4APBA 2HVGA 4ADMA 1C3CA 1VDKA 4C5RA 4EFCA 2II3A 5HW2A 4G2MA 1FUOA 5FANA 2RKTA 2I9DA 1Q5NA 3R6VA 1Q6XA 1XMCA 2XR7A 1HY1A 1EB4A 2II4A 1GK3A 1EADA 2O7DA 2J91A 3CRW1 1QCAA 3RD8A 2PTRA 4EP9A 1NDIA 2ZBAA
chains in the Genus database with same CATH topology
2IHWA 5H8WA 2VSQA 3MAEA 3FP0A 4G0BA 4G22A 4KE4A 5DUAA 2E9FA 3L60A 1EACA 5KJVA 5KJUA 1DPCA 4JN3A 1EAFA 1EAAA 3B30A 1C4TA 1PD5A 2E1TA 5T3EA 3U9BA 1CLAA 2VL7A 1XL7A 5DU9A 2CLAA 3B2SA 5FALA 3FOTA 1EAEA 1NOCB 1SCZA 4HVMA 4A15A 1Q23A 2II3A 2RKVA 4G2MA 4KECA 1XMDA 3CRVA 5FANA 3CLAA 2RKTA 3U9FA 2E1VA 4N72A 2I9DA 1DPBA 1Q9JA 5KJWA 2II5A 1XMCA 2XR7A 1L5AA 4CLAA 2BGHA 5KJTA 5KJSA 2II4A 2JGPA 1EADA 1EABA 3CRW1 2VSFA 4JN5A 2XHGA 1QCAA 1E2OA 2ZBAA 2E1UA 1CIAA 1XL8A 4NLEA 1DPDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IHW A;  2VSQ A;  3MAE A;  4G0B A;  3FP0 A;  4G22 A;  4KE4 A;  5DUA A;  3L60 A;  1EAC A;  5KJV A;  5KJU A;  1DPC A;  4JN3 A;  1EAF A;  1EAA A;  3B30 A;  1C4T A;  1PD5 A;  2E1T A;  5T3E A;  3U9B A;  1CLA A;  1XL7 A;  5DU9 A;  2CLA A;  3B2S A;  5FAL A;  3FOT A;  1EAE A;  1NOC B;  1SCZ A;  4HVM A;  1Q23 A;  2II3 A;  2RKV A;  4G2M A;  3U9F A;  4KEC A;  1XMD A;  5FAN A;  3CLA A;  2RKT A;  2E1V A;  4N72 A;  2I9D A;  1DPB A;  1Q9J A;  5KJW A;  2II5 A;  1XMC A;  2XR7 A;  1L5A A;  4CLA A;  2BGH A;  5KJT A;  5KJS A;  2II4 A;  2JGP A;  1EAD A;  1EAB A;  4JN5 A;  2XHG A;  1QCA A;  1E2O A;  2ZBA A;  2E1U A;  1CIA A;  1XL8 A;  1DPD A; 
#chains in the Genus database with same CATH topology
 2IHW A;  2VSQ A;  4G0B A;  4ADL A;  2PTQ A;  5KJV A;  1DOF A;  2FY5 A;  4JN3 A;  1EAA A;  2FW3 A;  5T3E A;  2VL7 A;  5DU9 A;  2O78 A;  1KQ7 A;  4APA A;  3FOT A;  4BAB A;  1EAE A;  1SCZ A;  1Q23 A;  2RKV A;  5F92 A;  2FUS A;  1T6P A;  1HY0 A;  2O7F A;  4C5U A;  5KJW A;  2II5 A;  5KJT A;  1U16 A;  2H3W A;  2RJR A;  3UNV A;  1EAB A;  4JN5 A;  1YFM A;  2VSF A;  1NDB A;  2E1U A;  3CZO A;  3NZ4 A;  1DCN A;  1XL8 A;  4NLE A;  5EYT A;  4KE4 A;  3MAE A;  2O7E A;  4C6G A;  2FY2 A;  2YII A;  1EAF A;  1YIS A;  1YFE A;  2H4T A;  1T6J A;  1U15 A;  1W27 A;  3R6Q A;  2PFM A;  1TJ7 A;  5D6B A;  2H3U A;  4HGV A;  5FAL A;  1NOC B;  2FY3 A;  4EEI A;  4HVM A;  5F91 A;  1FUR A;  3U9F A;  2O6Y A;  1XMD A;  3CRV A;  1DPB A;  4BAA A;  3OCF A;  1Q9J A;  1Y2M A;  1AUW A;  2DEB A;  1TJV A;  4NSL A;  2BGH A;  2JGP A;  2RCU A;  3C8T A;  1GKJ A;  2XHG A;  4EPH A;  1CIA A;  1S5O A;  4V2Q A;  3GZH A;  1RE5 A;  1DPD A;  2FY4 A;  3QBP A;  5H8W A;  4G22 A;  5DUA A;  3FP0 A;  5EYV A;  1NM8 A;  2OHY A;  3KDZ A;  4C5S A;  1DPC A;  1TJU A;  3B30 A;  1PD5 A;  4V2R A;  1CLA A;  1T7O A;  1XL7 A;  1GK2 A;  3OCE A;  3B2S A;  2PTS A;  2FYO A;  1GKM A;  1T7N A;  2QGA B;  1I0A A;  1K7W A;  3TV2 A;  4A15 A;  4KEC A;  3E04 A;  1XWO A;  3CLA A;  2E1V A;  4N72 A;  1C3U A;  3KDY A;  2VD6 A;  1L5A A;  4CLA A;  2X75 A;  5KJS A;  1FUQ A;  2NYF A;  1J3U A;  4FFX A;  4FLC A;  1K62 A;  3BHG A;  1E2O A;  1B8F A;  1NDF A;  1JSW A;  2QVE A;  1T7Q A;  4CQ5 A;  3R6Y A;  3L60 A;  1T1U A;  2E9F A;  1EAC A;  5KJU A;  2NYN A;  2RJS A;  2H3P A;  4MX2 A;  1C4T A;  2E1T A;  3U9B A;  3GTD A;  4EYW A;  1TJW A;  1FUP A;  2O7B A;  2CLA A;  3RRP A;  3NO9 A;  4APB A;  2HVG A;  4ADM A;  1C3C A;  1VDK A;  4C5R A;  4EFC A;  2II3 A;  5HW2 A;  4G2M A;  1FUO A;  5FAN A;  2RKT A;  2I9D A;  1Q5N A;  3R6V A;  1Q6X A;  1XMC A;  2XR7 A;  1HY1 A;  1EB4 A;  2II4 A;  1GK3 A;  1EAD A;  2O7D A;  2J91 A;  3CRW 1;  1QCA A;  3RD8 A;  2PTR A;  4EP9 A;  1NDI A;  2ZBA A; 
#chains in the Genus database with same CATH homology
 2IHW A;  5H8W A;  2VSQ A;  3MAE A;  3FP0 A;  4G0B A;  4G22 A;  4KE4 A;  5DUA A;  2E9F A;  3L60 A;  1EAC A;  5KJV A;  5KJU A;  1DPC A;  4JN3 A;  1EAF A;  1EAA A;  3B30 A;  1C4T A;  1PD5 A;  2E1T A;  5T3E A;  3U9B A;  1CLA A;  2VL7 A;  1XL7 A;  5DU9 A;  2CLA A;  3B2S A;  5FAL A;  3FOT A;  1EAE A;  1NOC B;  1SCZ A;  4HVM A;  4A15 A;  1Q23 A;  2II3 A;  2RKV A;  4G2M A;  4KEC A;  1XMD A;  3CRV A;  5FAN A;  3CLA A;  2RKT A;  3U9F A;  2E1V A;  4N72 A;  2I9D A;  1DPB A;  1Q9J A;  5KJW A;  2II5 A;  1XMC A;  2XR7 A;  1L5A A;  4CLA A;  2BGH A;  5KJT A;  5KJS A;  2II4 A;  2JGP A;  1EAD A;  1EAB A;  3CRW 1;  2VSF A;  4JN5 A;  2XHG A;  1QCA A;  1E2O A;  2ZBA A;  2E1U A;  1CIA A;  1XL8 A;  4NLE A;  1DPD A; 
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