1XL7A

Crystal structure of mouse carnitine octanoyltransferase
Total Genus 206
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
206
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Peroxisomal carnitine O-octanoyltransferase
publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
total genus 206
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xl7A01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xl7A03
5FALA 5FANA 5T3EA 1XMDA 1XL8A 2BGHA 1PD5A 2VSQA 3FP0A 2I9DA 1NOCB 1EACA 1DPDA 1SCZA 2JGPA 1QCAA 4G22A 4KE4A 5DUAA 3U9BA 2XR7A 5KJUA 2ZBAA 3U9FA 1EADA 5KJTA 2E1UA 1Q23A 2XHGA 1DPBA 2II5A 1EAAA 1CIAA 1Q9JA 4CLAA 2RKVA 4HVMA 1L5AA 4JN5A 1C4TA 1EAEA 2RKTA 4G0BA 2CLAA 1E2OA 5KJVA 1CLAA 3B2SA 4KECA 3MAEA 5KJWA 4JN3A 1EABA 3L60A 4N72A 5KJSA 3B30A 2II4A 2E1TA 2IHWA 4G2MA 5DU9A 1XL7A 1XMCA 1DPCA 3FOTA 2E1VA 2II3A 3CLAA 1EAFA
chains in the Genus database with same CATH superfamily
1T7NA 1T7QA 1YISA 1XMDA 1YFMA 3R6YA 2RCUA 5T3EA 1U15A 1EACA 4G22A 3OCFA 2FY3A 2PTSA 4KE4A 2E1UA 5FALA 1DPBA 2II5A 2VD6A 4EFCA 1Q9JA 1EB4A 3GTDA 1W27A 4MX2A 1EAEA 1DCNA 2O6YA 2YIIA 4NSLA 1GKJA 1Q6XA 4C5UA 1CLAA 3B2SA 3RD8A 1EABA 4JN3A 1HY1A 2II4A 2FW3A 5FANA 1Y2MA 4C5RA 2FY5A 1EAFA 2O7FA 1TJWA 2VSQA 3CRVA 2X75A 1NOCB 1SCZA 1T1UA 3FP0A 5KJSA 1QCAA 4V2RA 3TV2A 2ZBAA 5KJTA 2XHGA 2O7EA 1FUPA 1CIAA 1NDIA 3RRPA 2PFMA 4A15A 4APAA 1KQ7A 3CZOA 1JSWA 1XWOA 2RJRA 5HW2A 2E9FA 1GKMA 1U16A 4FLCA 1E2OA 1AUWA 2DEBA 2VL7A 4KECA 5KJWA 1FUOA 2O78A 4N72A 1I0AA 3NZ4A 3B30A 2E1TA 1TJ7A 2O7DA 2QVEA 5DU9A 1C3CA 1XMCA 3FOTA 2II3A 2J91A 4BAAA 1PD5A 2I9DA 2JGPA 5DUAA 4ADLA 1C3UA 1TJUA 1TJVA 3U9FA 1EADA 5KJUA 5EYVA 3NO9A 2H3UA 1VDKA 4FFXA 2FY4A 3BHGA 4HVMA 1L5AA 1J3UA 4NLEA 5EYTA 1C4TA 2PTQA 3OCEA 3GZHA 2RKTA 4G0BA 3E04A 1NM8A 2FUSA 1HY0A 2HVGA 1YFEA 4C5SA 4EEIA 4V2QA 5F92A 4EYWA 4ADMA 1B8FA 4EPHA 3UNVA 3L60A 2NYNA 2IHWA 4G2MA 2FY2A 1Q5NA 1XL7A 5F91A 1DPCA 2E1VA 3CLAA 3R6VA 4C6GA 1XL8A 2BGHA 1K62A 3MAEA 4CLAA 3R6QA 3KDYA 1DPDA 2H4TA 3U9BA 5H8WA 2XR7A 2O7BA 2NYFA 1Q23A 3KDZA 1EAAA 4BABA 2RKVA 4CQ5A 4JN5A 3QBPA 1T6JA 2OHYA 2QGAB 3C8TA 5D6BA 4APBA 3CRW1 1S5OA 1GK2A 2CLAA 2H3PA 1FURA 1FUQA 2H3WA 5KJVA 1GK3A 1RE5A 2VSFA 1NDFA 1K7WA 1T7OA 1DOFA 1T6PA 2PTRA 2RJSA 2FYOA 1NDBA 4EP9A 4HGVA
chains in the Genus database with same CATH topology
1XMDA 5T3EA 1EACA 4G22A 4KE4A 5FALA 2E1UA 1DPBA 2II5A 1Q9JA 1EAEA 1CLAA 3B2SA 4JN3A 1EABA 2II4A 5FANA 1EAFA 2VSQA 3CRVA 3FP0A 1NOCB 1SCZA 5KJSA 1QCAA 2ZBAA 5KJTA 2XHGA 1CIAA 4A15A 2E9FA 1E2OA 2VL7A 4KECA 5KJWA 4N72A 3B30A 2E1TA 5DU9A 1XMCA 3FOTA 2II3A 1PD5A 2I9DA 2JGPA 5DUAA 5KJUA 3U9FA 1EADA 4HVMA 1L5AA 4NLEA 1C4TA 2RKTA 4G0BA 3L60A 2IHWA 4G2MA 1XL7A 1DPCA 2E1VA 3CLAA 1XL8A 2BGHA 3MAEA 4CLAA 1DPDA 3U9BA 5H8WA 2XR7A 1Q23A 1EAAA 2RKVA 4JN5A 3CRW1 2CLAA 5KJVA 2VSFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FAL A;  5FAN A;  5T3E A;  1XMD A;  1XL8 A;  2BGH A;  1PD5 A;  2VSQ A;  3FP0 A;  2I9D A;  1NOC B;  1EAC A;  1DPD A;  1SCZ A;  2JGP A;  1QCA A;  4G22 A;  4KE4 A;  5DUA A;  3U9B A;  2XR7 A;  5KJU A;  2ZBA A;  3U9F A;  1EAD A;  5KJT A;  2E1U A;  1Q23 A;  2XHG A;  1DPB A;  2II5 A;  1EAA A;  1CIA A;  1Q9J A;  4CLA A;  2RKV A;  4HVM A;  1L5A A;  4JN5 A;  1C4T A;  1EAE A;  2RKT A;  4G0B A;  2CLA A;  1E2O A;  5KJV A;  1CLA A;  3B2S A;  4KEC A;  3MAE A;  5KJW A;  4JN3 A;  1EAB A;  3L60 A;  4N72 A;  5KJS A;  3B30 A;  2II4 A;  2E1T A;  2IHW A;  4G2M A;  5DU9 A;  1XL7 A;  1XMC A;  1DPC A;  3FOT A;  2E1V A;  2II3 A;  3CLA A;  1EAF A; 
#chains in the Genus database with same CATH topology
 1T7N A;  1T7Q A;  1YIS A;  1XMD A;  1YFM A;  3R6Y A;  2RCU A;  5T3E A;  1U15 A;  1EAC A;  4G22 A;  3OCF A;  2FY3 A;  2PTS A;  4KE4 A;  2E1U A;  5FAL A;  1DPB A;  2II5 A;  2VD6 A;  4EFC A;  1Q9J A;  1EB4 A;  3GTD A;  1W27 A;  4MX2 A;  1EAE A;  1DCN A;  2O6Y A;  2YII A;  4NSL A;  1GKJ A;  1Q6X A;  4C5U A;  1CLA A;  3B2S A;  3RD8 A;  1EAB A;  4JN3 A;  1HY1 A;  2II4 A;  2FW3 A;  5FAN A;  1Y2M A;  4C5R A;  2FY5 A;  1EAF A;  2O7F A;  1TJW A;  2VSQ A;  3CRV A;  2X75 A;  1NOC B;  1SCZ A;  1T1U A;  3FP0 A;  5KJS A;  1QCA A;  4V2R A;  3TV2 A;  2ZBA A;  5KJT A;  2XHG A;  2O7E A;  1FUP A;  1CIA A;  1NDI A;  3RRP A;  2PFM A;  4A15 A;  4APA A;  1KQ7 A;  3CZO A;  1JSW A;  1XWO A;  2RJR A;  5HW2 A;  2E9F A;  1GKM A;  1U16 A;  4FLC A;  1E2O A;  1AUW A;  2DEB A;  2VL7 A;  4KEC A;  5KJW A;  1FUO A;  2O78 A;  4N72 A;  1I0A A;  3NZ4 A;  3B30 A;  2E1T A;  1TJ7 A;  2O7D A;  2QVE A;  5DU9 A;  1C3C A;  1XMC A;  3FOT A;  2II3 A;  2J91 A;  4BAA A;  1PD5 A;  2I9D A;  2JGP A;  5DUA A;  4ADL A;  1C3U A;  1TJU A;  1TJV A;  3U9F A;  1EAD A;  5KJU A;  5EYV A;  3NO9 A;  2H3U A;  1VDK A;  4FFX A;  2FY4 A;  3BHG A;  4HVM A;  1L5A A;  1J3U A;  4NLE A;  5EYT A;  1C4T A;  2PTQ A;  3OCE A;  3GZH A;  2RKT A;  4G0B A;  3E04 A;  1NM8 A;  2FUS A;  1HY0 A;  2HVG A;  1YFE A;  4C5S A;  4EEI A;  4V2Q A;  5F92 A;  4EYW A;  4ADM A;  1B8F A;  4EPH A;  3UNV A;  3L60 A;  2NYN A;  2IHW A;  4G2M A;  2FY2 A;  1Q5N A;  1XL7 A;  5F91 A;  1DPC A;  2E1V A;  3CLA A;  3R6V A;  4C6G A;  1XL8 A;  2BGH A;  1K62 A;  3MAE A;  4CLA A;  3R6Q A;  3KDY A;  1DPD A;  2H4T A;  3U9B A;  5H8W A;  2XR7 A;  2O7B A;  2NYF A;  1Q23 A;  3KDZ A;  1EAA A;  4BAB A;  2RKV A;  4CQ5 A;  4JN5 A;  3QBP A;  1T6J A;  2OHY A;  2QGA B;  3C8T A;  5D6B A;  4APB A;  3CRW 1;  1S5O A;  1GK2 A;  2CLA A;  2H3P A;  1FUR A;  1FUQ A;  2H3W A;  5KJV A;  1GK3 A;  1RE5 A;  2VSF A;  1NDF A;  1K7W A;  1T7O A;  1DOF A;  1T6P A;  2PTR A;  2RJS A;  2FYO A;  1NDB A;  4EP9 A;  4HGV A; 
#chains in the Genus database with same CATH homology
 1XMD A;  5T3E A;  1EAC A;  4G22 A;  4KE4 A;  5FAL A;  2E1U A;  1DPB A;  2II5 A;  1Q9J A;  1EAE A;  1CLA A;  3B2S A;  4JN3 A;  1EAB A;  2II4 A;  5FAN A;  1EAF A;  2VSQ A;  3CRV A;  3FP0 A;  1NOC B;  1SCZ A;  5KJS A;  1QCA A;  2ZBA A;  5KJT A;  2XHG A;  1CIA A;  4A15 A;  2E9F A;  1E2O A;  2VL7 A;  4KEC A;  5KJW A;  4N72 A;  3B30 A;  2E1T A;  5DU9 A;  1XMC A;  3FOT A;  2II3 A;  1PD5 A;  2I9D A;  2JGP A;  5DUA A;  5KJU A;  3U9F A;  1EAD A;  4HVM A;  1L5A A;  4NLE A;  1C4T A;  2RKT A;  4G0B A;  3L60 A;  2IHW A;  4G2M A;  1XL7 A;  1DPC A;  2E1V A;  3CLA A;  1XL8 A;  2BGH A;  3MAE A;  4CLA A;  1DPD A;  3U9B A;  5H8W A;  2XR7 A;  1Q23 A;  1EAA A;  2RKV A;  4JN5 A;  3CRW 1;  2CLA A;  5KJV A;  2VSF A; 
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