1XL7A

Crystal structure of mouse carnitine octanoyltransferase
Total Genus 206
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
206
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Peroxisomal carnitine O-octanoyltransferase
publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 206
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xl7A01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xl7A03
3B30A 3U9BA 1PD5A 2VSQA 4HVMA 4JN5A 1NOCB 2I9DA 1EAFA 2IHWA 2II5A 2ZBAA 3FOTA 3MAEA 3U9FA 5KJVA 2E1UA 3FP0A 4G22A 4KECA 4N72A 2II4A 1XMDA 1CLAA 1EACA 1XL8A 5FALA 2RKVA 1EABA 1DPBA 1DPCA 1SCZA 4G2MA 1EAEA 2BGHA 5DU9A 1L5AA 5KJSA 2XHGA 3B2SA 1EAAA 2E1TA 4JN3A 1C4TA 1EADA 2E1VA 1Q23A 4KE4A 2RKTA 4G0BA 1E2OA 1QCAA 1XL7A 2JGPA 5KJWA 3CLAA 5T3EA 1XMCA 5FANA 2XR7A 4CLAA 1CIAA 1DPDA 5KJUA 2II3A 2CLAA 5KJTA 5DUAA 1Q9JA 3L60A
chains in the Genus database with same CATH superfamily
3B30A 4HVMA 2NYNA 2O78A 4JN5A 1C3UA 1NOCB 2VL7A 1T7OA 3U9FA 2E1UA 1YFEA 4G22A 3R6QA 1NDFA 3R6YA 1EB4A 2NYFA 1XMDA 1CLAA 2FY5A 2RJSA 1HY0A 4G2MA 1NDIA 2PTRA 3UNVA 2E1VA 2PTQA 1FUQA 2RKTA 1FURA 4BAAA 4EFCA 1QCAA 2JGPA 1T6JA 5T3EA 3NZ4A 2J91A 3OCFA 1W27A 4CLAA 1RE5A 1Q9JA 1GK3A 1TJUA 1PD5A 3U9BA 1KQ7A 2YIIA 1Q5NA 3R6VA 2IHWA 2II5A 3MAEA 5KJVA 1Y2MA 3KDYA 1T1UA 5F92A 1Q6XA 1JSWA 3C8TA 2QVEA 3RD8A 1AUWA 2RKVA 2FYOA 1GKMA 5DU9A 4C6GA 1L5AA 2QGAB 2E1TA 2H3PA 1J3UA 1TJVA 3GTDA 1K7WA 2RJRA 4G0BA 4V2RA 1GKJA 2FY2A 4HGVA 1U16A 2FW3A 2H4TA 4EP9A 1K62A 5EYTA 1T7NA 5DUAA 4ADMA 2O7BA 4C5RA 3CZOA 4A15A 1XWOA 5EYVA 2I9DA 1EAFA 4EEIA 3FOTA 4KECA 3BHGA 3TV2A 3NO9A 2II4A 2O7EA 1XL8A 5FALA 1EABA 2O6YA 1EAEA 4FLCA 2XHGA 2X75A 1EADA 1FUOA 1NM8A 2OHYA 4C5SA 1E2OA 1DOFA 1XL7A 1YISA 4ADLA 4BABA 5KJWA 1B8FA 1XMCA 5FANA 2XR7A 1CIAA 2HVGA 1TJ7A 2CLAA 2H3WA 2II3A 5KJTA 5F91A 2RCUA 3L60A 5HW2A 2O7DA 2H3UA 3CRW1 2VSQA 1FUPA 2VSFA 2PTSA 2ZBAA 2PFMA 4EYWA 3E04A 3QBPA 3FP0A 3GZHA 2FY3A 4N72A 1C3CA 1EACA 2FUSA 4NLEA 1HY1A 1SCZA 1DPBA 3KDZA 3OCEA 1DPCA 5H8WA 1VDKA 2BGHA 1DCNA 1TJWA 1U15A 5KJSA 1GK2A 3B2SA 4FFXA 1EAAA 4JN3A 1I0AA 1T6PA 4V2QA 1C4TA 4MX2A 4EPHA 4APAA 1Q23A 2FY4A 2E9FA 4KE4A 2O7FA 3RRPA 2VD6A 4NSLA 1T7QA 3CLAA 3CRVA 1NDBA 4C5UA 4CQ5A 1DPDA 5KJUA 1YFMA 1S5OA 5D6BA 2DEBA 4APBA
chains in the Genus database with same CATH topology
3B30A 4HVMA 4JN5A 1NOCB 2VL7A 3U9FA 2E1UA 4G22A 1XMDA 1CLAA 4G2MA 2E1VA 2RKTA 1QCAA 2JGPA 5T3EA 4CLAA 1Q9JA 3U9BA 1PD5A 2IHWA 2II5A 3MAEA 5KJVA 2RKVA 5DU9A 1L5AA 2E1TA 4G0BA 5DUAA 2I9DA 1EAFA 3FOTA 4KECA 2II4A 1XL8A 5FALA 1EABA 1EAEA 2XHGA 1EADA 1E2OA 1XL7A 5KJWA 1XMCA 5FANA 2XR7A 1CIAA 2II3A 2CLAA 5KJTA 3L60A 3CRW1 2VSQA 2VSFA 2ZBAA 3FP0A 4N72A 1EACA 4NLEA 1SCZA 1DPBA 1DPCA 5KJSA 5H8WA 2BGHA 3B2SA 1EAAA 4JN3A 1C4TA 1Q23A 2E9FA 4KE4A 3CLAA 3CRVA 1DPDA 5KJUA 4A15A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B30 A;  3U9B A;  1PD5 A;  2VSQ A;  4HVM A;  4JN5 A;  1NOC B;  2I9D A;  1EAF A;  2IHW A;  2II5 A;  2ZBA A;  3FOT A;  3MAE A;  3U9F A;  5KJV A;  2E1U A;  3FP0 A;  4G22 A;  4KEC A;  4N72 A;  2II4 A;  1XMD A;  1CLA A;  1EAC A;  1XL8 A;  5FAL A;  2RKV A;  1EAB A;  1DPB A;  1DPC A;  1SCZ A;  4G2M A;  1EAE A;  2BGH A;  5DU9 A;  1L5A A;  5KJS A;  2XHG A;  3B2S A;  1EAA A;  2E1T A;  4JN3 A;  1C4T A;  1EAD A;  2E1V A;  1Q23 A;  4KE4 A;  2RKT A;  4G0B A;  1E2O A;  1QCA A;  1XL7 A;  2JGP A;  5KJW A;  3CLA A;  5T3E A;  1XMC A;  5FAN A;  2XR7 A;  4CLA A;  1CIA A;  1DPD A;  5KJU A;  2II3 A;  2CLA A;  5KJT A;  5DUA A;  1Q9J A;  3L60 A; 
#chains in the Genus database with same CATH topology
 3B30 A;  4HVM A;  2NYN A;  2O78 A;  4JN5 A;  1C3U A;  1NOC B;  2VL7 A;  1T7O A;  3U9F A;  2E1U A;  1YFE A;  4G22 A;  3R6Q A;  1NDF A;  3R6Y A;  1EB4 A;  2NYF A;  1XMD A;  1CLA A;  2FY5 A;  2RJS A;  1HY0 A;  4G2M A;  1NDI A;  2PTR A;  3UNV A;  2E1V A;  2PTQ A;  1FUQ A;  2RKT A;  1FUR A;  4BAA A;  4EFC A;  1QCA A;  2JGP A;  1T6J A;  5T3E A;  3NZ4 A;  2J91 A;  3OCF A;  1W27 A;  4CLA A;  1RE5 A;  1Q9J A;  1GK3 A;  1TJU A;  1PD5 A;  3U9B A;  1KQ7 A;  2YII A;  1Q5N A;  3R6V A;  2IHW A;  2II5 A;  3MAE A;  5KJV A;  1Y2M A;  3KDY A;  1T1U A;  5F92 A;  1Q6X A;  1JSW A;  3C8T A;  2QVE A;  3RD8 A;  1AUW A;  2RKV A;  2FYO A;  1GKM A;  5DU9 A;  4C6G A;  1L5A A;  2QGA B;  2E1T A;  2H3P A;  1J3U A;  1TJV A;  3GTD A;  1K7W A;  2RJR A;  4G0B A;  4V2R A;  1GKJ A;  2FY2 A;  4HGV A;  1U16 A;  2FW3 A;  2H4T A;  4EP9 A;  1K62 A;  5EYT A;  1T7N A;  5DUA A;  4ADM A;  2O7B A;  4C5R A;  3CZO A;  4A15 A;  1XWO A;  5EYV A;  2I9D A;  1EAF A;  4EEI A;  3FOT A;  4KEC A;  3BHG A;  3TV2 A;  3NO9 A;  2II4 A;  2O7E A;  1XL8 A;  5FAL A;  1EAB A;  2O6Y A;  1EAE A;  4FLC A;  2XHG A;  2X75 A;  1EAD A;  1FUO A;  1NM8 A;  2OHY A;  4C5S A;  1E2O A;  1DOF A;  1XL7 A;  1YIS A;  4ADL A;  4BAB A;  5KJW A;  1B8F A;  1XMC A;  5FAN A;  2XR7 A;  1CIA A;  2HVG A;  1TJ7 A;  2CLA A;  2H3W A;  2II3 A;  5KJT A;  5F91 A;  2RCU A;  3L60 A;  5HW2 A;  2O7D A;  2H3U A;  3CRW 1;  2VSQ A;  1FUP A;  2VSF A;  2PTS A;  2ZBA A;  2PFM A;  4EYW A;  3E04 A;  3QBP A;  3FP0 A;  3GZH A;  2FY3 A;  4N72 A;  1C3C A;  1EAC A;  2FUS A;  4NLE A;  1HY1 A;  1SCZ A;  1DPB A;  3KDZ A;  3OCE A;  1DPC A;  5H8W A;  1VDK A;  2BGH A;  1DCN A;  1TJW A;  1U15 A;  5KJS A;  1GK2 A;  3B2S A;  4FFX A;  1EAA A;  4JN3 A;  1I0A A;  1T6P A;  4V2Q A;  1C4T A;  4MX2 A;  4EPH A;  4APA A;  1Q23 A;  2FY4 A;  2E9F A;  4KE4 A;  2O7F A;  3RRP A;  2VD6 A;  4NSL A;  1T7Q A;  3CLA A;  3CRV A;  1NDB A;  4C5U A;  4CQ5 A;  1DPD A;  5KJU A;  1YFM A;  1S5O A;  5D6B A;  2DEB A;  4APB A; 
#chains in the Genus database with same CATH homology
 3B30 A;  4HVM A;  4JN5 A;  1NOC B;  2VL7 A;  3U9F A;  2E1U A;  4G22 A;  1XMD A;  1CLA A;  4G2M A;  2E1V A;  2RKT A;  1QCA A;  2JGP A;  5T3E A;  4CLA A;  1Q9J A;  3U9B A;  1PD5 A;  2IHW A;  2II5 A;  3MAE A;  5KJV A;  2RKV A;  5DU9 A;  1L5A A;  2E1T A;  4G0B A;  5DUA A;  2I9D A;  1EAF A;  3FOT A;  4KEC A;  2II4 A;  1XL8 A;  5FAL A;  1EAB A;  1EAE A;  2XHG A;  1EAD A;  1E2O A;  1XL7 A;  5KJW A;  1XMC A;  5FAN A;  2XR7 A;  1CIA A;  2II3 A;  2CLA A;  5KJT A;  3L60 A;  3CRW 1;  2VSQ A;  2VSF A;  2ZBA A;  3FP0 A;  4N72 A;  1EAC A;  4NLE A;  1SCZ A;  1DPB A;  1DPC A;  5KJS A;  5H8W A;  2BGH A;  3B2S A;  1EAA A;  4JN3 A;  1C4T A;  1Q23 A;  2E9F A;  4KE4 A;  3CLA A;  3CRV A;  1DPD A;  5KJU A;  4A15 A; 
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