1XL7A

Crystal structure of mouse carnitine octanoyltransferase
Total Genus 206
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
206
sequence length
602
structure length
591
Chain Sequence
b'ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Peroxisomal carnitine O-octanoyltransferase
publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 206
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xl7A01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xl7A03
1C4TA 2RKTA 1DPCA 3FP0A 2II3A 3CLAA 4KE4A 5FANA 2E1VA 1XL7A 1CLAA 3B2SA 1EACA 2BGHA 3B30A 3FOTA 1E2OA 1SCZA 2E1TA 4G0BA 1DPDA 4KECA 4N72A 3U9FA 3U9BA 2ZBAA 5KJTA 4JN3A 5T3EA 2IHWA 2RKVA 1EABA 2I9DA 4G22A 5DU9A 5DUAA 5KJUA 1EAFA 5KJWA 1EAEA 1Q9JA 3L60A 2VSQA 4CLAA 2II4A 1DPBA 1QCAA 1XMCA 2CLAA 3MAEA 1L5AA 2XR7A 5FALA 1XL8A 1XMDA 4JN5A 1NOCB 1EAAA 1EADA 2JGPA 2II5A 2XHGA 4G2MA 5KJVA 5KJSA 1Q23A 1CIAA 4HVMA 2E1UA 1PD5A
chains in the Genus database with same CATH superfamily
2PTQA 3FP0A 4KE4A 5FANA 3OCFA 3QBPA 4MX2A 3B2SA 3B30A 2O6YA 1SCZA 4G0BA 1KQ7A 3C8TA 4NSLA 5EYTA 4V2QA 5T3EA 1EABA 1RE5A 1C3UA 5DU9A 2FY5A 5KJWA 2FY2A 4CLAA 1T7QA 1DPBA 1XMCA 4CQ5A 3MAEA 1K7WA 4ADLA 1NOCB 2H4TA 1W27A 4HGVA 4NLEA 2JGPA 1YISA 5KJVA 5KJSA 1FUOA 3R6QA 2H3UA 1CIAA 4BABA 4APAA 3CZOA 1VDKA 1C4TA 1PD5A 1DPCA 2RKTA 2II3A 3CLAA 2FUSA 1DCNA 1XL7A 2PTRA 4ADMA 2E1TA 2FW3A 4N72A 3U9FA 5F92A 3U9BA 4JN3A 2VL7A 1J3UA 3CRVA 1EAFA 3E04A 3L60A 1K62A 2VSQA 4FLCA 1L5AA 2XR7A 5FALA 3R6VA 2FYOA 2H3WA 1C3CA 2FY4A 1Q6XA 1EAAA 1I0AA 4G2MA 3CRW1 4EEIA 3UNVA 4HVMA 1T6JA 1T6PA 2QVEA 2PFMA 4BAAA 1TJWA 1CLAA 1T7OA 2RCUA 2BGHA 3FOTA 4EFCA 1GK3A 4A15A 1DPDA 3GZHA 4C5SA 1JSWA 3KDYA 3R6YA 2IHWA 2H3PA 3OCEA 4C5RA 1EB4A 2FY3A 1S5OA 2RKVA 4V2RA 3BHGA 2DEBA 1FUQA 5H8WA 5DUAA 1U15A 1HY1A 3RRPA 1Q9JA 2II4A 1YFEA 2PTSA 2RJRA 2CLAA 5EYVA 2QGAB 1XL8A 1XWOA 2OHYA 2RJSA 4APBA 1NDFA 2E9FA 3RD8A 1HY0A 3TV2A 1Y2MA 5D6BA 5HW2A 2II5A 1FUPA 3NZ4A 4EYWA 2NYFA 3NO9A 2E1UA 2O78A 2E1VA 1TJ7A 2VSFA 1NM8A 1EACA 1TJVA 1B8FA 1E2OA 4FFXA 4KECA 2ZBAA 5KJTA 4C5UA 1YFMA 2O7DA 2I9DA 1GKJA 4G22A 1NDIA 1DOFA 3KDZA 5KJUA 1EAEA 1GKMA 3GTDA 1QCAA 1U16A 1T1UA 1T7NA 4EPHA 1NDBA 1XMDA 2NYNA 4JN5A 2O7FA 2O7EA 2YIIA 1AUWA 1FURA 2O7BA 2X75A 1EADA 5F91A 2XHGA 1GK2A 2J91A 2VD6A 1Q23A 2HVGA 4C6GA 1Q5NA 1TJUA 4EP9A
chains in the Genus database with same CATH topology
3FP0A 4KE4A 5FANA 3B2SA 3B30A 1SCZA 4G0BA 5T3EA 1EABA 5DU9A 5KJWA 4CLAA 1DPBA 1XMCA 3MAEA 1NOCB 4NLEA 2JGPA 5KJVA 5KJSA 1CIAA 1PD5A 1C4TA 2RKTA 1DPCA 2II3A 3CLAA 1XL7A 2E1TA 4N72A 3U9FA 3U9BA 4JN3A 2VL7A 3CRVA 1EAFA 3L60A 2VSQA 1L5AA 2XR7A 5FALA 1EAAA 4G2MA 3CRW1 4HVMA 1CLAA 3FOTA 2BGHA 4A15A 1DPDA 2IHWA 2RKVA 5DUAA 5H8WA 1Q9JA 2II4A 2CLAA 1XL8A 2E9FA 2II5A 2E1UA 2E1VA 2VSFA 1EACA 1E2OA 4KECA 2ZBAA 5KJTA 2I9DA 4G22A 5KJUA 1EAEA 1QCAA 1XMDA 4JN5A 1EADA 2XHGA 1Q23A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1C4T A;  2RKT A;  1DPC A;  3FP0 A;  2II3 A;  3CLA A;  4KE4 A;  5FAN A;  2E1V A;  1XL7 A;  1CLA A;  3B2S A;  1EAC A;  2BGH A;  3B30 A;  3FOT A;  1E2O A;  1SCZ A;  2E1T A;  4G0B A;  1DPD A;  4KEC A;  4N72 A;  3U9F A;  3U9B A;  2ZBA A;  5KJT A;  4JN3 A;  5T3E A;  2IHW A;  2RKV A;  1EAB A;  2I9D A;  4G22 A;  5DU9 A;  5DUA A;  5KJU A;  1EAF A;  5KJW A;  1EAE A;  1Q9J A;  3L60 A;  2VSQ A;  4CLA A;  2II4 A;  1DPB A;  1QCA A;  1XMC A;  2CLA A;  3MAE A;  1L5A A;  2XR7 A;  5FAL A;  1XL8 A;  1XMD A;  4JN5 A;  1NOC B;  1EAA A;  1EAD A;  2JGP A;  2II5 A;  2XHG A;  4G2M A;  5KJV A;  5KJS A;  1Q23 A;  1CIA A;  4HVM A;  2E1U A;  1PD5 A; 
#chains in the Genus database with same CATH topology
 2PTQ A;  3FP0 A;  4KE4 A;  5FAN A;  3OCF A;  3QBP A;  4MX2 A;  3B2S A;  3B30 A;  2O6Y A;  1SCZ A;  4G0B A;  1KQ7 A;  3C8T A;  4NSL A;  5EYT A;  4V2Q A;  5T3E A;  1EAB A;  1RE5 A;  1C3U A;  5DU9 A;  2FY5 A;  5KJW A;  2FY2 A;  4CLA A;  1T7Q A;  1DPB A;  1XMC A;  4CQ5 A;  3MAE A;  1K7W A;  4ADL A;  1NOC B;  2H4T A;  1W27 A;  4HGV A;  4NLE A;  2JGP A;  1YIS A;  5KJV A;  5KJS A;  1FUO A;  3R6Q A;  2H3U A;  1CIA A;  4BAB A;  4APA A;  3CZO A;  1VDK A;  1C4T A;  1PD5 A;  1DPC A;  2RKT A;  2II3 A;  3CLA A;  2FUS A;  1DCN A;  1XL7 A;  2PTR A;  4ADM A;  2E1T A;  2FW3 A;  4N72 A;  3U9F A;  5F92 A;  3U9B A;  4JN3 A;  2VL7 A;  1J3U A;  3CRV A;  1EAF A;  3E04 A;  3L60 A;  1K62 A;  2VSQ A;  4FLC A;  1L5A A;  2XR7 A;  5FAL A;  3R6V A;  2FYO A;  2H3W A;  1C3C A;  2FY4 A;  1Q6X A;  1EAA A;  1I0A A;  4G2M A;  3CRW 1;  4EEI A;  3UNV A;  4HVM A;  1T6J A;  1T6P A;  2QVE A;  2PFM A;  4BAA A;  1TJW A;  1CLA A;  1T7O A;  2RCU A;  2BGH A;  3FOT A;  4EFC A;  1GK3 A;  4A15 A;  1DPD A;  3GZH A;  4C5S A;  1JSW A;  3KDY A;  3R6Y A;  2IHW A;  2H3P A;  3OCE A;  4C5R A;  1EB4 A;  2FY3 A;  1S5O A;  2RKV A;  4V2R A;  3BHG A;  2DEB A;  1FUQ A;  5H8W A;  5DUA A;  1U15 A;  1HY1 A;  3RRP A;  1Q9J A;  2II4 A;  1YFE A;  2PTS A;  2RJR A;  2CLA A;  5EYV A;  2QGA B;  1XL8 A;  1XWO A;  2OHY A;  2RJS A;  4APB A;  1NDF A;  2E9F A;  3RD8 A;  1HY0 A;  3TV2 A;  1Y2M A;  5D6B A;  5HW2 A;  2II5 A;  1FUP A;  3NZ4 A;  4EYW A;  2NYF A;  3NO9 A;  2E1U A;  2O78 A;  2E1V A;  1TJ7 A;  2VSF A;  1NM8 A;  1EAC A;  1TJV A;  1B8F A;  1E2O A;  4FFX A;  4KEC A;  2ZBA A;  5KJT A;  4C5U A;  1YFM A;  2O7D A;  2I9D A;  1GKJ A;  4G22 A;  1NDI A;  1DOF A;  3KDZ A;  5KJU A;  1EAE A;  1GKM A;  3GTD A;  1QCA A;  1U16 A;  1T1U A;  1T7N A;  4EPH A;  1NDB A;  1XMD A;  2NYN A;  4JN5 A;  2O7F A;  2O7E A;  2YII A;  1AUW A;  1FUR A;  2O7B A;  2X75 A;  1EAD A;  5F91 A;  2XHG A;  1GK2 A;  2J91 A;  2VD6 A;  1Q23 A;  2HVG A;  4C6G A;  1Q5N A;  1TJU A;  4EP9 A; 
#chains in the Genus database with same CATH homology
 3FP0 A;  4KE4 A;  5FAN A;  3B2S A;  3B30 A;  1SCZ A;  4G0B A;  5T3E A;  1EAB A;  5DU9 A;  5KJW A;  4CLA A;  1DPB A;  1XMC A;  3MAE A;  1NOC B;  4NLE A;  2JGP A;  5KJV A;  5KJS A;  1CIA A;  1PD5 A;  1C4T A;  2RKT A;  1DPC A;  2II3 A;  3CLA A;  1XL7 A;  2E1T A;  4N72 A;  3U9F A;  3U9B A;  4JN3 A;  2VL7 A;  3CRV A;  1EAF A;  3L60 A;  2VSQ A;  1L5A A;  2XR7 A;  5FAL A;  1EAA A;  4G2M A;  3CRW 1;  4HVM A;  1CLA A;  3FOT A;  2BGH A;  4A15 A;  1DPD A;  2IHW A;  2RKV A;  5DUA A;  5H8W A;  1Q9J A;  2II4 A;  2CLA A;  1XL8 A;  2E9F A;  2II5 A;  2E1U A;  2E1V A;  2VSF A;  1EAC A;  1E2O A;  4KEC A;  2ZBA A;  5KJT A;  2I9D A;  4G22 A;  5KJU A;  1EAE A;  1QCA A;  1XMD A;  4JN5 A;  1EAD A;  2XHG A;  1Q23 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...