4N72A

Catalytic domain from dihydrolipoamide acetyltransferase of pyruvate dehydrogenase from escherichia coli
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
246
structure length
246
Chain Sequence
PGMLPWPKVDFSKFGEIEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITELEAFRKQQNEEAAKRKLDVKITPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVVPVFKDVNKKGIIELSRELMTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSKSAMEPVWNGKEFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSDIRRLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Pyruvate dehydrogenase (Dihydrolipoyltransacetylase componen
publication title Structure and Function of the Catalytic Domain of the Dihydrolipoyl Acetyltransferase Component in Escherichia coli Pyruvate Dehydrogenase Complex.
pubmed doi rcsb
source organism Escherichia coli
total genus 71
structure length 246
sequence length 246
chains with identical sequence B, C
ec nomenclature ec 2.3.1.12: Dihydrolipoyllysine-residue acetyltransferase.
pdb deposition date 2013-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 4n72A00
2I9DA 4N72A 1XMDA 1CLAA 5T3EA 2E1TA 4G0BA 3U9BA 5KJWA 2II4A 2JGPA 1XMCA 1EAFA 5KJSA 2II3A 2RKVA 4CLAA 2BGHA 1QCAA 5DU9A 4JN5A 1XL8A 4HVMA 1EAEA 1CIAA 4JN3A 5KJUA 5FALA 1Q23A 1Q9JA 3B2SA 2E1UA 1NOCB 1DPBA 1PD5A 1DPCA 3FOTA 1SCZA 1EAAA 5FANA 2RKTA 1E2OA 3FP0A 2II5A 2E1VA 5DUAA 2IHWA 4G22A 2XR7A 3U9FA 5KJTA 2ZBAA 1XL7A 3B30A 1DPDA 1C4TA 1L5AA 5KJVA 1EABA 3L60A 3MAEA 4KECA 2VSQA 4KE4A 2CLAA 3CLAA 4G2MA 1EACA 2XHGA 1EADA
chains in the Genus database with same CATH superfamily
5KJWA 5T3EA 2E1TA 2RCUA 4G0BA 2H3PA 2II3A 1NDIA 2H3WA 1XL8A 4JN3A 1NDFA 2FW3A 2FY5A 1NDBA 1PD5A 2RKTA 2IHWA 4G22A 2XR7A 5KJTA 1C4TA 1L5AA 1EABA 2XHGA 2E1VA 1CLAA 2DEBA 4EYWA 4JN5A 1EAEA 1Q23A 3B2SA 4EPHA 1DPBA 1T1UA 5DUAA 3U9FA 2ZBAA 3B30A 1T7QA 3CLAA 1T7NA 1XMDA 1NM8A 1EAFA 5KJSA 2RKVA 4CLAA 1QCAA 1CIAA 1Q9JA 2E1UA 2FY4A 2FYOA 2FY2A 4EP9A 3FOTA 1SCZA 1EAAA 5FANA 2II5A 1DPDA 3L60A 4KECA 2VSQA 2CLAA 1Q6XA 1EADA 2I9DA 4N72A 3U9BA 1T7OA 2II4A 2JGPA 1XMCA 2BGHA 5DU9A 4HVMA 5KJUA 5FALA 2H3UA 1NOCB 1DPCA 1E2OA 3FP0A 2H4TA 1S5OA 1XL7A 5KJVA 3MAEA 2FY3A 4KE4A 4G2MA 1EACA
chains in the Genus database with same CATH topology
2I9DA 4N72A 1XMDA 1CLAA 5T3EA 2E1TA 4G0BA 3U9BA 5KJWA 2II4A 2JGPA 1XMCA 1EAFA 5KJSA 2II3A 2RKVA 4CLAA 2BGHA 1QCAA 5DU9A 4JN5A 1XL8A 4HVMA 1EAEA 1CIAA 4JN3A 5KJUA 5FALA 1Q23A 1Q9JA 3B2SA 2E1UA 1NOCB 1DPBA 1PD5A 1DPCA 3FOTA 1SCZA 1EAAA 5FANA 2RKTA 1E2OA 3FP0A 2II5A 2E1VA 5DUAA 2IHWA 4G22A 2XR7A 3U9FA 5KJTA 2ZBAA 1XL7A 3B30A 1DPDA 1C4TA 1L5AA 5KJVA 1EABA 3L60A 3MAEA 4KECA 2VSQA 4KE4A 2CLAA 3CLAA 4G2MA 1EACA 2XHGA 1EADA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I9D A;  4N72 A;  1XMD A;  1CLA A;  5T3E A;  2E1T A;  4G0B A;  3U9B A;  5KJW A;  2II4 A;  2JGP A;  1XMC A;  1EAF A;  5KJS A;  2II3 A;  2RKV A;  4CLA A;  2BGH A;  1QCA A;  5DU9 A;  4JN5 A;  1XL8 A;  4HVM A;  1EAE A;  1CIA A;  4JN3 A;  5KJU A;  5FAL A;  1Q23 A;  1Q9J A;  3B2S A;  2E1U A;  1NOC B;  1DPB A;  1PD5 A;  1DPC A;  3FOT A;  1SCZ A;  1EAA A;  5FAN A;  2RKT A;  1E2O A;  3FP0 A;  2II5 A;  2E1V A;  5DUA A;  2IHW A;  4G22 A;  2XR7 A;  3U9F A;  5KJT A;  2ZBA A;  1XL7 A;  3B30 A;  1DPD A;  1C4T A;  1L5A A;  5KJV A;  1EAB A;  3L60 A;  3MAE A;  4KEC A;  2VSQ A;  4KE4 A;  2CLA A;  3CLA A;  4G2M A;  1EAC A;  2XHG A;  1EAD A; 
#chains in the Genus database with same CATH topology
 5KJW A;  5T3E A;  2E1T A;  2RCU A;  4G0B A;  2H3P A;  2II3 A;  1NDI A;  2H3W A;  1XL8 A;  4JN3 A;  1NDF A;  2FW3 A;  2FY5 A;  1NDB A;  1PD5 A;  2RKT A;  2IHW A;  4G22 A;  2XR7 A;  5KJT A;  1C4T A;  1L5A A;  1EAB A;  2XHG A;  2E1V A;  1CLA A;  2DEB A;  4EYW A;  4JN5 A;  1EAE A;  1Q23 A;  3B2S A;  4EPH A;  1DPB A;  1T1U A;  5DUA A;  3U9F A;  2ZBA A;  3B30 A;  1T7Q A;  3CLA A;  1T7N A;  1XMD A;  1NM8 A;  1EAF A;  5KJS A;  2RKV A;  4CLA A;  1QCA A;  1CIA A;  1Q9J A;  2E1U A;  2FY4 A;  2FYO A;  2FY2 A;  4EP9 A;  3FOT A;  1SCZ A;  1EAA A;  5FAN A;  2II5 A;  1DPD A;  3L60 A;  4KEC A;  2VSQ A;  2CLA A;  1Q6X A;  1EAD A;  2I9D A;  4N72 A;  3U9B A;  1T7O A;  2II4 A;  2JGP A;  1XMC A;  2BGH A;  5DU9 A;  4HVM A;  5KJU A;  5FAL A;  2H3U A;  1NOC B;  1DPC A;  1E2O A;  3FP0 A;  2H4T A;  1S5O A;  1XL7 A;  5KJV A;  3MAE A;  2FY3 A;  4KE4 A;  4G2M A;  1EAC A; 
#chains in the Genus database with same CATH homology
 2I9D A;  4N72 A;  1XMD A;  1CLA A;  5T3E A;  2E1T A;  4G0B A;  3U9B A;  5KJW A;  2II4 A;  2JGP A;  1XMC A;  1EAF A;  5KJS A;  2II3 A;  2RKV A;  4CLA A;  2BGH A;  1QCA A;  5DU9 A;  4JN5 A;  1XL8 A;  4HVM A;  1EAE A;  1CIA A;  4JN3 A;  5KJU A;  5FAL A;  1Q23 A;  1Q9J A;  3B2S A;  2E1U A;  1NOC B;  1DPB A;  1PD5 A;  1DPC A;  3FOT A;  1SCZ A;  1EAA A;  5FAN A;  2RKT A;  1E2O A;  3FP0 A;  2II5 A;  2E1V A;  5DUA A;  2IHW A;  4G22 A;  2XR7 A;  3U9F A;  5KJT A;  2ZBA A;  1XL7 A;  3B30 A;  1DPD A;  1C4T A;  1L5A A;  5KJV A;  1EAB A;  3L60 A;  3MAE A;  4KEC A;  2VSQ A;  4KE4 A;  2CLA A;  3CLA A;  4G2M A;  1EAC A;  2XHG A;  1EAD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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