1XMDA

M335v mutant structure of mouse carnitine octanoyltransferase
Total Genus 225
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
225
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVVVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
molecule keywords Peroxisomal carnitine O-octanoyltransferase
total genus 225
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xmdA01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xmdA03
1DPDA 3FP0A 2CLAA 1XMDA 1C4TA 3B30A 1EAAA 1PD5A 5KJTA 1L5AA 2JGPA 4G0BA 1EADA 5KJUA 4JN5A 4HVMA 4G2MA 5FALA 1SCZA 2I9DA 4KE4A 2E1UA 5KJWA 3L60A 1Q9JA 2XHGA 5DUAA 4CLAA 2E1TA 3U9FA 4N72A 5KJVA 1EAEA 1CLAA 4JN3A 2XR7A 1EAFA 2IHWA 2ZBAA 1DPBA 5FANA 2VSQA 3U9BA 1XL7A 1XMCA 1XL8A 2BGHA 1E2OA 1Q23A 4KECA 2II5A 2RKVA 3FOTA 5T3EA 1EABA 2RKTA 1DPCA 1NOCB 1CIAA 3B2SA 5DU9A 2E1VA 5KJSA 1EACA 1QCAA 3CLAA 2II4A 2II3A 4G22A 3MAEA
chains in the Genus database with same CATH superfamily
5F91A 5HW2A 1YFMA 2CLAA 2HVGA 4ADMA 4APBA 1C4TA 2DEBA 1GK3A 1DOFA 2E9FA 2JGPA 1EADA 2O78A 1GKJA 1Y2MA 1FUQA 4JN5A 2FUSA 3KDYA 1VDKA 1SCZA 4EFCA 1T7NA 1Q5NA 1Q9JA 5KJVA 3NZ4A 1FURA 5D6BA 2H3WA 1HY1A 2ZBAA 1S5OA 5FANA 4C6GA 1XL7A 2O7BA 2FY5A 1XL8A 5EYTA 3R6YA 2O7EA 2QVEA 1EABA 2RKTA 1CIAA 2E1VA 1XWOA 4CQ5A 1W27A 1DPDA 3RRPA 3OCFA 1XMDA 3FP0A 1FUOA 3B30A 4BAAA 2H4TA 1L5AA 1TJUA 3NO9A 2NYNA 2O7FA 1HY0A 2FY2A 4HVMA 5KJWA 1T6JA 4EYWA 2FW3A 1K7WA 2XHGA 3CRVA 2RCUA 5DUAA 5F92A 4C5RA 2XR7A 1EAFA 3KDZA 4ADLA 1DPBA 1T1UA 2IHWA 2PTQA 1TJ7A 2VL7A 1I0AA 2H3UA 1Q23A 2RJRA 2QGAB 4FLCA 3FOTA 1Q6XA 2O6YA 1RE5A 2J91A 4NLEA 5DU9A 1TJWA 1DCNA 2O7DA 1U15A 1QCAA 3CLAA 1NM8A 1K62A 3GTDA 2VD6A 4EPHA 5KJTA 1T6PA 3CRW1 2RJSA 1NDBA 1B8FA 1FUPA 4A15A 1KQ7A 5FALA 1T7OA 2I9DA 3L60A 5H8WA 3OCEA 3R6QA 2FY4A 4CLAA 2VSFA 4N72A 3U9FA 1NDFA 2NYFA 4JN3A 4EEIA 2OHYA 3U9BA 2VSQA 2YIIA 1GKMA 1YISA 4MX2A 1AUWA 2X75A 4KECA 4APAA 1TJVA 5T3EA 1NOCB 3TV2A 3B2SA 4EP9A 1EACA 2II4A 1GK2A 4FFXA 2PTRA 4C5SA 2FYOA 2II3A 1T7QA 3MAEA 1EB4A 4G22A 5EYVA 2PTSA 2H3PA 2FY3A 1EAAA 1PD5A 4G0BA 1YFEA 5KJUA 3C8TA 1J3UA 1JSWA 3CZOA 4G2MA 4V2RA 4KE4A 2E1UA 3QBPA 2E1TA 4BABA 1EAEA 1CLAA 3R6VA 3UNVA 1C3CA 3E04A 1C3UA 4HGVA 1XMCA 3RD8A 2BGHA 1E2OA 4NSLA 2II5A 2RKVA 2PFMA 4V2QA 1DPCA 5KJSA 4C5UA 3BHGA 1NDIA 1U16A 3GZHA
chains in the Genus database with same CATH topology
1DPDA 3FP0A 2CLAA 1XMDA 1C4TA 3B30A 1EAAA 1PD5A 5KJTA 1L5AA 3CRW1 2E9FA 2JGPA 4G0BA 1EADA 4A15A 5KJUA 4JN5A 4HVMA 4G2MA 5FALA 1SCZA 2I9DA 4KE4A 2E1UA 5KJWA 3L60A 5H8WA 1Q9JA 2XHGA 5DUAA 3CRVA 2E1TA 2VSFA 4N72A 3U9FA 4CLAA 1EAEA 1CLAA 4JN3A 5KJVA 2XR7A 1EAFA 2IHWA 2ZBAA 1DPBA 5FANA 2VSQA 3U9BA 1XL7A 2VL7A 1XMCA 1XL8A 2BGHA 1E2OA 1Q23A 4KECA 2II5A 2RKVA 3FOTA 5T3EA 1EABA 2RKTA 1DPCA 1NOCB 4NLEA 1CIAA 3B2SA 5DU9A 2E1VA 5KJSA 1EACA 1QCAA 3CLAA 2II4A 2II3A 4G22A 3MAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DPD A;  3FP0 A;  2CLA A;  1XMD A;  1C4T A;  3B30 A;  1EAA A;  1PD5 A;  5KJT A;  1L5A A;  2JGP A;  4G0B A;  1EAD A;  5KJU A;  4JN5 A;  4HVM A;  4G2M A;  5FAL A;  1SCZ A;  2I9D A;  4KE4 A;  2E1U A;  5KJW A;  3L60 A;  1Q9J A;  2XHG A;  5DUA A;  4CLA A;  2E1T A;  3U9F A;  4N72 A;  5KJV A;  1EAE A;  1CLA A;  4JN3 A;  2XR7 A;  1EAF A;  2IHW A;  2ZBA A;  1DPB A;  5FAN A;  2VSQ A;  3U9B A;  1XL7 A;  1XMC A;  1XL8 A;  2BGH A;  1E2O A;  1Q23 A;  4KEC A;  2II5 A;  2RKV A;  3FOT A;  5T3E A;  1EAB A;  2RKT A;  1DPC A;  1NOC B;  1CIA A;  3B2S A;  5DU9 A;  2E1V A;  5KJS A;  1EAC A;  1QCA A;  3CLA A;  2II4 A;  2II3 A;  4G22 A;  3MAE A; 
#chains in the Genus database with same CATH topology
 5F91 A;  5HW2 A;  1YFM A;  2CLA A;  2HVG A;  4ADM A;  4APB A;  1C4T A;  2DEB A;  1GK3 A;  1DOF A;  2E9F A;  2JGP A;  1EAD A;  2O78 A;  1GKJ A;  1Y2M A;  1FUQ A;  4JN5 A;  2FUS A;  3KDY A;  1VDK A;  1SCZ A;  4EFC A;  1T7N A;  1Q5N A;  1Q9J A;  5KJV A;  3NZ4 A;  1FUR A;  5D6B A;  2H3W A;  1HY1 A;  2ZBA A;  1S5O A;  5FAN A;  4C6G A;  1XL7 A;  2O7B A;  2FY5 A;  1XL8 A;  5EYT A;  3R6Y A;  2O7E A;  2QVE A;  1EAB A;  2RKT A;  1CIA A;  2E1V A;  1XWO A;  4CQ5 A;  1W27 A;  1DPD A;  3RRP A;  3OCF A;  1XMD A;  3FP0 A;  1FUO A;  3B30 A;  4BAA A;  2H4T A;  1L5A A;  1TJU A;  3NO9 A;  2NYN A;  2O7F A;  1HY0 A;  2FY2 A;  4HVM A;  5KJW A;  1T6J A;  4EYW A;  2FW3 A;  1K7W A;  2XHG A;  3CRV A;  2RCU A;  5DUA A;  5F92 A;  4C5R A;  2XR7 A;  1EAF A;  3KDZ A;  4ADL A;  1DPB A;  1T1U A;  2IHW A;  2PTQ A;  1TJ7 A;  2VL7 A;  1I0A A;  2H3U A;  1Q23 A;  2RJR A;  2QGA B;  4FLC A;  3FOT A;  1Q6X A;  2O6Y A;  1RE5 A;  2J91 A;  4NLE A;  5DU9 A;  1TJW A;  1DCN A;  2O7D A;  1U15 A;  1QCA A;  3CLA A;  1NM8 A;  1K62 A;  3GTD A;  2VD6 A;  4EPH A;  5KJT A;  1T6P A;  3CRW 1;  2RJS A;  1NDB A;  1B8F A;  1FUP A;  4A15 A;  1KQ7 A;  5FAL A;  1T7O A;  2I9D A;  3L60 A;  5H8W A;  3OCE A;  3R6Q A;  2FY4 A;  4CLA A;  2VSF A;  4N72 A;  3U9F A;  1NDF A;  2NYF A;  4JN3 A;  4EEI A;  2OHY A;  3U9B A;  2VSQ A;  2YII A;  1GKM A;  1YIS A;  4MX2 A;  1AUW A;  2X75 A;  4KEC A;  4APA A;  1TJV A;  5T3E A;  1NOC B;  3TV2 A;  3B2S A;  4EP9 A;  1EAC A;  2II4 A;  1GK2 A;  4FFX A;  2PTR A;  4C5S A;  2FYO A;  2II3 A;  1T7Q A;  3MAE A;  1EB4 A;  4G22 A;  5EYV A;  2PTS A;  2H3P A;  2FY3 A;  1EAA A;  1PD5 A;  4G0B A;  1YFE A;  5KJU A;  3C8T A;  1J3U A;  1JSW A;  3CZO A;  4G2M A;  4V2R A;  4KE4 A;  2E1U A;  3QBP A;  2E1T A;  4BAB A;  1EAE A;  1CLA A;  3R6V A;  3UNV A;  1C3C A;  3E04 A;  1C3U A;  4HGV A;  1XMC A;  3RD8 A;  2BGH A;  1E2O A;  4NSL A;  2II5 A;  2RKV A;  2PFM A;  4V2Q A;  1DPC A;  5KJS A;  4C5U A;  3BHG A;  1NDI A;  1U16 A;  3GZH A; 
#chains in the Genus database with same CATH homology
 1DPD A;  3FP0 A;  2CLA A;  1XMD A;  1C4T A;  3B30 A;  1EAA A;  1PD5 A;  5KJT A;  1L5A A;  3CRW 1;  2E9F A;  2JGP A;  4G0B A;  1EAD A;  4A15 A;  5KJU A;  4JN5 A;  4HVM A;  4G2M A;  5FAL A;  1SCZ A;  2I9D A;  4KE4 A;  2E1U A;  5KJW A;  3L60 A;  5H8W A;  1Q9J A;  2XHG A;  5DUA A;  3CRV A;  2E1T A;  2VSF A;  4N72 A;  3U9F A;  4CLA A;  1EAE A;  1CLA A;  4JN3 A;  5KJV A;  2XR7 A;  1EAF A;  2IHW A;  2ZBA A;  1DPB A;  5FAN A;  2VSQ A;  3U9B A;  1XL7 A;  2VL7 A;  1XMC A;  1XL8 A;  2BGH A;  1E2O A;  1Q23 A;  4KEC A;  2II5 A;  2RKV A;  3FOT A;  5T3E A;  1EAB A;  2RKT A;  1DPC A;  1NOC B;  4NLE A;  1CIA A;  3B2S A;  5DU9 A;  2E1V A;  5KJS A;  1EAC A;  1QCA A;  3CLA A;  2II4 A;  2II3 A;  4G22 A;  3MAE A; 
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