1XMDA

M335v mutant structure of mouse carnitine octanoyltransferase
Total Genus 225
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
225
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVVVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
molecule keywords Peroxisomal carnitine O-octanoyltransferase
total genus 225
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xmdA01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xmdA03
3CLAA 2II3A 5T3EA 4KE4A 1CIAA 3MAEA 2I9DA 1EAFA 3B2SA 2IHWA 1XMDA 3B30A 1SCZA 2E1UA 2II4A 4JN3A 1Q23A 2VSQA 1EADA 3L60A 5KJVA 4G2MA 1NOCB 1DPBA 1C4TA 3U9FA 1DPDA 2CLAA 2II5A 1E2OA 4G0BA 2RKTA 1EACA 2E1VA 5KJWA 4HVMA 2XR7A 5FALA 3FP0A 4CLAA 5KJSA 4N72A 1EAEA 2ZBAA 1EABA 1EAAA 1XMCA 5FANA 4G22A 5DUAA 1XL8A 1DPCA 4KECA 3U9BA 2E1TA 5KJUA 4JN5A 5KJTA 1CLAA 1PD5A 2JGPA 2BGHA 1QCAA 2XHGA 2RKVA 1XL7A 5DU9A 1L5AA 3FOTA 1Q9JA
chains in the Genus database with same CATH superfamily
2NYFA 4FLCA 2PTSA 3MAEA 3KDZA 4HGVA 2FY2A 1TJUA 3B30A 2FW3A 3CZOA 2HVGA 2E1UA 4APAA 1EB4A 1GKJA 2VSFA 2H3PA 1EADA 2RCUA 3L60A 4G2MA 1NOCB 5D6BA 1DPBA 1C4TA 1NDFA 2FYOA 4C6GA 2H3WA 1YISA 2FY4A 1FUOA 2RJSA 1Q6XA 1T7NA 2II5A 5KJWA 2XR7A 5KJSA 2ZBAA 1YFMA 5FANA 1TJ7A 2J91A 5DUAA 1XL8A 1DPCA 1HY0A 2OHYA 4A15A 5KJUA 4JN5A 1U15A 4NSLA 1CLAA 1PD5A 1FUQA 2RKVA 3CLAA 2O6YA 4NLEA 2II3A 4KE4A 3OCEA 1HY1A 1EAFA 4FFXA 1XMDA 5F91A 2E9FA 2II4A 1GK3A 1XWOA 1Y2MA 1W27A 3KDYA 4APBA 1TJVA 4EP9A 2NYNA 1VDKA 1E2OA 3TV2A 2RKTA 2QVEA 3OCFA 1EABA 2VL7A 5H8WA 3NZ4A 1K7WA 2QGAB 1NDIA 2O78A 3R6YA 4V2QA 3FOTA 4C5UA 5DU9A 1L5AA 1NM8A 1XL7A 1C3UA 2H3UA 1Q9JA 2O7DA 1FUPA 1Q5NA 4V2RA 1CIAA 1K62A 4EEIA 2X75A 3E04A 1Q23A 3BHGA 2O7BA 3U9FA 1YFEA 2CLAA 4CQ5A 2FY5A 4G0BA 3QBPA 3GTDA 3C8TA 5EYVA 2FY3A 1TJWA 4EYWA 5FALA 4N72A 3RRPA 1B8FA 4ADMA 2RJRA 2H4TA 4G22A 5F92A 4KECA 1RE5A 5HW2A 3UNVA 1U16A 1T6PA 1I0AA 5EYTA 2JGPA 2BGHA 1SCZA 2XHGA 1T6JA 1AUWA 2FUSA 4C5SA 1DOFA 4MX2A 4EPHA 2I9DA 1NDBA 2O7FA 3B2SA 2VD6A 2O7EA 4BABA 2PTQA 2IHWA 1T7QA 4JN3A 1C3CA 2VSQA 1GK2A 3R6QA 5KJVA 4C5RA 1JSWA 1GKMA 1DCNA 1DPDA 4BAAA 3GZHA 1FURA 1T1UA 3RD8A 1J3UA 1EACA 1KQ7A 2E1VA 4HVMA 4ADLA 3FP0A 4CLAA 2PTRA 1EAEA 1EAAA 1XMCA 2YIIA 4EFCA 2DEBA 3U9BA 2E1TA 3CRVA 3NO9A 3R6VA 1S5OA 1T7OA 3CRW1 5KJTA 1QCAA 2PFMA 5T3EA
chains in the Genus database with same CATH topology
3CLAA 1L5AA 2II3A 5T3EA 4KE4A 1CIAA 3MAEA 2I9DA 1EAFA 3B2SA 2IHWA 1XMDA 3B30A 2E9FA 1SCZA 2E1UA 2II4A 4JN3A 2VSFA 1Q23A 2VSQA 1EADA 3L60A 5KJVA 4G2MA 1NOCB 1DPBA 1C4TA 3U9FA 1DPDA 2CLAA 2II5A 1E2OA 4G0BA 2RKTA 1EACA 2E1VA 5KJWA 4HVMA 2XR7A 5FALA 3FP0A 4CLAA 5KJSA 4N72A 1EAEA 2ZBAA 1EABA 1EAAA 1XMCA 5H8WA 2VL7A 5FANA 4G22A 5DUAA 1XL8A 1DPCA 4KECA 3U9BA 4A15A 2E1TA 5KJUA 4JN5A 3CRVA 5KJTA 3FOTA 1CLAA 3CRW1 1PD5A 2BGHA 1QCAA 2JGPA 2RKVA 1XL7A 2XHGA 5DU9A 4NLEA 1Q9JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CLA A;  2II3 A;  5T3E A;  4KE4 A;  1CIA A;  3MAE A;  2I9D A;  1EAF A;  3B2S A;  2IHW A;  1XMD A;  3B30 A;  1SCZ A;  2E1U A;  2II4 A;  4JN3 A;  1Q23 A;  2VSQ A;  1EAD A;  3L60 A;  5KJV A;  4G2M A;  1NOC B;  1DPB A;  1C4T A;  3U9F A;  1DPD A;  2CLA A;  2II5 A;  1E2O A;  4G0B A;  2RKT A;  1EAC A;  2E1V A;  5KJW A;  4HVM A;  2XR7 A;  5FAL A;  3FP0 A;  4CLA A;  5KJS A;  4N72 A;  1EAE A;  2ZBA A;  1EAB A;  1EAA A;  1XMC A;  5FAN A;  4G22 A;  5DUA A;  1XL8 A;  1DPC A;  4KEC A;  3U9B A;  2E1T A;  5KJU A;  4JN5 A;  5KJT A;  1CLA A;  1PD5 A;  2JGP A;  2BGH A;  1QCA A;  2XHG A;  2RKV A;  1XL7 A;  5DU9 A;  1L5A A;  3FOT A;  1Q9J A; 
#chains in the Genus database with same CATH topology
 2NYF A;  4FLC A;  2PTS A;  3MAE A;  3KDZ A;  4HGV A;  2FY2 A;  1TJU A;  3B30 A;  2FW3 A;  3CZO A;  2HVG A;  2E1U A;  4APA A;  1EB4 A;  1GKJ A;  2VSF A;  2H3P A;  1EAD A;  2RCU A;  3L60 A;  4G2M A;  1NOC B;  5D6B A;  1DPB A;  1C4T A;  1NDF A;  2FYO A;  4C6G A;  2H3W A;  1YIS A;  2FY4 A;  1FUO A;  2RJS A;  1Q6X A;  1T7N A;  2II5 A;  5KJW A;  2XR7 A;  5KJS A;  2ZBA A;  1YFM A;  5FAN A;  1TJ7 A;  2J91 A;  5DUA A;  1XL8 A;  1DPC A;  1HY0 A;  2OHY A;  4A15 A;  5KJU A;  4JN5 A;  1U15 A;  4NSL A;  1CLA A;  1PD5 A;  1FUQ A;  2RKV A;  3CLA A;  2O6Y A;  4NLE A;  2II3 A;  4KE4 A;  3OCE A;  1HY1 A;  1EAF A;  4FFX A;  1XMD A;  5F91 A;  2E9F A;  2II4 A;  1GK3 A;  1XWO A;  1Y2M A;  1W27 A;  3KDY A;  4APB A;  1TJV A;  4EP9 A;  2NYN A;  1VDK A;  1E2O A;  3TV2 A;  2RKT A;  2QVE A;  3OCF A;  1EAB A;  2VL7 A;  5H8W A;  3NZ4 A;  1K7W A;  2QGA B;  1NDI A;  2O78 A;  3R6Y A;  4V2Q A;  3FOT A;  4C5U A;  5DU9 A;  1L5A A;  1NM8 A;  1XL7 A;  1C3U A;  2H3U A;  1Q9J A;  2O7D A;  1FUP A;  1Q5N A;  4V2R A;  1CIA A;  1K62 A;  4EEI A;  2X75 A;  3E04 A;  1Q23 A;  3BHG A;  2O7B A;  3U9F A;  1YFE A;  2CLA A;  4CQ5 A;  2FY5 A;  4G0B A;  3QBP A;  3GTD A;  3C8T A;  5EYV A;  2FY3 A;  1TJW A;  4EYW A;  5FAL A;  4N72 A;  3RRP A;  1B8F A;  4ADM A;  2RJR A;  2H4T A;  4G22 A;  5F92 A;  4KEC A;  1RE5 A;  5HW2 A;  3UNV A;  1U16 A;  1T6P A;  1I0A A;  5EYT A;  2JGP A;  2BGH A;  1SCZ A;  2XHG A;  1T6J A;  1AUW A;  2FUS A;  4C5S A;  1DOF A;  4MX2 A;  4EPH A;  2I9D A;  1NDB A;  2O7F A;  3B2S A;  2VD6 A;  2O7E A;  4BAB A;  2PTQ A;  2IHW A;  1T7Q A;  4JN3 A;  1C3C A;  2VSQ A;  1GK2 A;  3R6Q A;  5KJV A;  4C5R A;  1JSW A;  1GKM A;  1DCN A;  1DPD A;  4BAA A;  3GZH A;  1FUR A;  1T1U A;  3RD8 A;  1J3U A;  1EAC A;  1KQ7 A;  2E1V A;  4HVM A;  4ADL A;  3FP0 A;  4CLA A;  2PTR A;  1EAE A;  1EAA A;  1XMC A;  2YII A;  4EFC A;  2DEB A;  3U9B A;  2E1T A;  3CRV A;  3NO9 A;  3R6V A;  1S5O A;  1T7O A;  3CRW 1;  5KJT A;  1QCA A;  2PFM A;  5T3E A; 
#chains in the Genus database with same CATH homology
 3CLA A;  1L5A A;  2II3 A;  5T3E A;  4KE4 A;  1CIA A;  3MAE A;  2I9D A;  1EAF A;  3B2S A;  2IHW A;  1XMD A;  3B30 A;  2E9F A;  1SCZ A;  2E1U A;  2II4 A;  4JN3 A;  2VSF A;  1Q23 A;  2VSQ A;  1EAD A;  3L60 A;  5KJV A;  4G2M A;  1NOC B;  1DPB A;  1C4T A;  3U9F A;  1DPD A;  2CLA A;  2II5 A;  1E2O A;  4G0B A;  2RKT A;  1EAC A;  2E1V A;  5KJW A;  4HVM A;  2XR7 A;  5FAL A;  3FP0 A;  4CLA A;  5KJS A;  4N72 A;  1EAE A;  2ZBA A;  1EAB A;  1EAA A;  1XMC A;  5H8W A;  2VL7 A;  5FAN A;  4G22 A;  5DUA A;  1XL8 A;  1DPC A;  4KEC A;  3U9B A;  4A15 A;  2E1T A;  5KJU A;  4JN5 A;  3CRV A;  5KJT A;  3FOT A;  1CLA A;  3CRW 1;  1PD5 A;  2BGH A;  1QCA A;  2JGP A;  2RKV A;  1XL7 A;  2XHG A;  5DU9 A;  4NLE A;  1Q9J A; 
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