1XMDA

M335v mutant structure of mouse carnitine octanoyltransferase
Total Genus 225
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
225
sequence length
602
structure length
591
Chain Sequence
b'ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVVVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Peroxisomal carnitine O-octanoyltransferase
publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 225
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xmdA01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xmdA03
2XHGA 2E1VA 4G0BA 4CLAA 1DPCA 3FOTA 2IHWA 2II3A 5DUAA 3L60A 4JN3A 2II5A 2RKVA 1XL8A 2I9DA 1C4TA 4N72A 1Q23A 4G2MA 1E2OA 2XR7A 3CLAA 1L5AA 5KJVA 2CLAA 2ZBAA 1QCAA 1SCZA 3U9BA 1XMCA 1EABA 1CIAA 1NOCB 1DPBA 5KJTA 1Q9JA 5DU9A 2II4A 1CLAA 2BGHA 5FALA 1XL7A 1EAEA 2RKTA 2VSQA 1EADA 3U9FA 3MAEA 1EAFA 3B2SA 4KE4A 5T3EA 4KECA 5KJSA 4G22A 5KJUA 4HVMA 5KJWA 4JN5A 5FANA 3B30A 1EAAA 1XMDA 2E1TA 1DPDA 1EACA 3FP0A 1PD5A 2JGPA 2E1UA
chains in the Genus database with same CATH superfamily
2FUSA 1DPCA 2PTSA 3L60A 3KDZA 4APBA 1T6JA 5EYTA 1XL8A 5F91A 1C4TA 3R6QA 2VD6A 1Q23A 1E2OA 1YFEA 3UNVA 1EB4A 1XMCA 5EYVA 2FY2A 4HGVA 5KJTA 1T1UA 1TJUA 5FALA 1NDIA 1T7QA 2O7BA 2BGHA 4ADLA 3CRVA 2FW3A 2VSQA 1Q6XA 3U9FA 4C5UA 1JSWA 5T3EA 2VSFA 4NSLA 2H3PA 5KJUA 5FANA 4EP9A 2O6YA 2DEBA 1Y2MA 2HVGA 1DPDA 1EACA 1QCAA 2II4A 3CRW1 2JGPA 2NYFA 1W27A 2E1VA 4CLAA 4ADMA 2RKVA 4FLCA 1T6PA 2PTQA 2J91A 2XR7A 2QVEA 4MX2A 2CLAA 2ZBAA 5HW2A 1T7OA 1DPBA 5DU9A 1CLAA 2X75A 1FURA 1GK3A 2QGAB 3BHGA 1FUQA 4G22A 1B8FA 3GTDA 4JN5A 3RD8A 2E9FA 3NO9A 1AUWA 1NM8A 1K7WA 1PD5A 1FUOA 3GZHA 5H8WA 2OHYA 1HY0A 1YFMA 1Q5NA 2PTRA 2IHWA 1TJWA 2II3A 4JN3A 3R6VA 1YISA 4BAAA 4FFXA 1TJ7A 3RRPA 2I9DA 3C8TA 1NDBA 1I0AA 4N72A 1K62A 2O7DA 1L5AA 4EEIA 3OCFA 3QBPA 1SCZA 2FY5A 3U9BA 4NLEA 1CIAA 1NOCB 1DCNA 1Q9JA 2RJSA 1XL7A 2H3WA 1C3CA 1EADA 2YIIA 1EAFA 1S5OA 3CZOA 4EPHA 5KJSA 3OCEA 1C3UA 2O7EA 2O7FA 2E1TA 1U16A 1DOFA 2PFMA 1GK2A 4C6GA 3NZ4A 2E1UA 2FY3A 2XHGA 3FP0A 4G0BA 3FOTA 2RJRA 4V2QA 1J3UA 1FUPA 2FYOA 5DUAA 2VL7A 3R6YA 2II5A 1TJVA 1NDFA 3KDYA 2O78A 5D6BA 4EFCA 5KJVA 4C5SA 4APAA 3CLAA 4G2MA 1GKMA 4EYWA 3TV2A 1EABA 1XWOA 4A15A 1GKJA 5F92A 4C5RA 1EAEA 2H3UA 3E04A 1T7NA 3MAEA 3B2SA 4V2RA 1VDKA 4BABA 2NYNA 1KQ7A 4KE4A 2FY4A 4KECA 2H4TA 4HVMA 5KJWA 4CQ5A 3B30A 1EAAA 1XMDA 1HY1A 2RCUA 2RKTA 1U15A 1RE5A
chains in the Genus database with same CATH topology
1DPCA 3L60A 1XL8A 1C4TA 1Q23A 1E2OA 1XMCA 5KJTA 5FALA 2BGHA 3CRVA 2VSQA 3U9FA 5T3EA 2VSFA 5KJUA 5FANA 1QCAA 2II4A 1DPDA 1EACA 3CRW1 2JGPA 2E1VA 4CLAA 2RKVA 2XR7A 2CLAA 2ZBAA 1DPBA 5DU9A 1CLAA 4G22A 4JN5A 2E9FA 1PD5A 5H8WA 2IHWA 2II3A 4JN3A 2I9DA 4N72A 1L5AA 1SCZA 3U9BA 4NLEA 1CIAA 1NOCB 1Q9JA 1XL7A 1EADA 1EAFA 5KJSA 2E1TA 3FP0A 2E1UA 2XHGA 4G0BA 3FOTA 5DUAA 2VL7A 2II5A 5KJVA 4G2MA 3CLAA 1EABA 4A15A 1EAEA 3MAEA 3B2SA 4KE4A 4KECA 4HVMA 5KJWA 3B30A 1EAAA 1XMDA 2RKTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XHG A;  2E1V A;  4G0B A;  4CLA A;  1DPC A;  3FOT A;  2IHW A;  2II3 A;  5DUA A;  3L60 A;  4JN3 A;  2II5 A;  2RKV A;  1XL8 A;  2I9D A;  1C4T A;  4N72 A;  1Q23 A;  4G2M A;  1E2O A;  2XR7 A;  3CLA A;  1L5A A;  5KJV A;  2CLA A;  2ZBA A;  1QCA A;  1SCZ A;  3U9B A;  1XMC A;  1EAB A;  1CIA A;  1NOC B;  1DPB A;  5KJT A;  1Q9J A;  5DU9 A;  2II4 A;  1CLA A;  2BGH A;  5FAL A;  1XL7 A;  1EAE A;  2RKT A;  2VSQ A;  1EAD A;  3U9F A;  3MAE A;  1EAF A;  3B2S A;  4KE4 A;  5T3E A;  4KEC A;  5KJS A;  4G22 A;  5KJU A;  4HVM A;  5KJW A;  4JN5 A;  5FAN A;  3B30 A;  1EAA A;  1XMD A;  2E1T A;  1DPD A;  1EAC A;  3FP0 A;  1PD5 A;  2JGP A;  2E1U A; 
#chains in the Genus database with same CATH topology
 2FUS A;  1DPC A;  2PTS A;  3L60 A;  3KDZ A;  4APB A;  1T6J A;  5EYT A;  1XL8 A;  5F91 A;  1C4T A;  3R6Q A;  2VD6 A;  1Q23 A;  1E2O A;  1YFE A;  3UNV A;  1EB4 A;  1XMC A;  5EYV A;  2FY2 A;  4HGV A;  5KJT A;  1T1U A;  1TJU A;  5FAL A;  1NDI A;  1T7Q A;  2O7B A;  2BGH A;  4ADL A;  3CRV A;  2FW3 A;  2VSQ A;  1Q6X A;  3U9F A;  4C5U A;  1JSW A;  5T3E A;  2VSF A;  4NSL A;  2H3P A;  5KJU A;  5FAN A;  4EP9 A;  2O6Y A;  2DEB A;  1Y2M A;  2HVG A;  1DPD A;  1EAC A;  1QCA A;  2II4 A;  3CRW 1;  2JGP A;  2NYF A;  1W27 A;  2E1V A;  4CLA A;  4ADM A;  2RKV A;  4FLC A;  1T6P A;  2PTQ A;  2J91 A;  2XR7 A;  2QVE A;  4MX2 A;  2CLA A;  2ZBA A;  5HW2 A;  1T7O A;  1DPB A;  5DU9 A;  1CLA A;  2X75 A;  1FUR A;  1GK3 A;  2QGA B;  3BHG A;  1FUQ A;  4G22 A;  1B8F A;  3GTD A;  4JN5 A;  3RD8 A;  2E9F A;  3NO9 A;  1AUW A;  1NM8 A;  1K7W A;  1PD5 A;  1FUO A;  3GZH A;  5H8W A;  2OHY A;  1HY0 A;  1YFM A;  1Q5N A;  2PTR A;  2IHW A;  1TJW A;  2II3 A;  4JN3 A;  3R6V A;  1YIS A;  4BAA A;  4FFX A;  1TJ7 A;  3RRP A;  2I9D A;  3C8T A;  1NDB A;  1I0A A;  4N72 A;  1K62 A;  2O7D A;  1L5A A;  4EEI A;  3OCF A;  3QBP A;  1SCZ A;  2FY5 A;  3U9B A;  4NLE A;  1CIA A;  1NOC B;  1DCN A;  1Q9J A;  2RJS A;  1XL7 A;  2H3W A;  1C3C A;  1EAD A;  2YII A;  1EAF A;  1S5O A;  3CZO A;  4EPH A;  5KJS A;  3OCE A;  1C3U A;  2O7E A;  2O7F A;  2E1T A;  1U16 A;  1DOF A;  2PFM A;  1GK2 A;  4C6G A;  3NZ4 A;  2E1U A;  2FY3 A;  2XHG A;  3FP0 A;  4G0B A;  3FOT A;  2RJR A;  4V2Q A;  1J3U A;  1FUP A;  2FYO A;  5DUA A;  2VL7 A;  3R6Y A;  2II5 A;  1TJV A;  1NDF A;  3KDY A;  2O78 A;  5D6B A;  4EFC A;  5KJV A;  4C5S A;  4APA A;  3CLA A;  4G2M A;  1GKM A;  4EYW A;  3TV2 A;  1EAB A;  1XWO A;  4A15 A;  1GKJ A;  5F92 A;  4C5R A;  1EAE A;  2H3U A;  3E04 A;  1T7N A;  3MAE A;  3B2S A;  4V2R A;  1VDK A;  4BAB A;  2NYN A;  1KQ7 A;  4KE4 A;  2FY4 A;  4KEC A;  2H4T A;  4HVM A;  5KJW A;  4CQ5 A;  3B30 A;  1EAA A;  1XMD A;  1HY1 A;  2RCU A;  2RKT A;  1U15 A;  1RE5 A; 
#chains in the Genus database with same CATH homology
 1DPC A;  3L60 A;  1XL8 A;  1C4T A;  1Q23 A;  1E2O A;  1XMC A;  5KJT A;  5FAL A;  2BGH A;  3CRV A;  2VSQ A;  3U9F A;  5T3E A;  2VSF A;  5KJU A;  5FAN A;  1QCA A;  2II4 A;  1DPD A;  1EAC A;  3CRW 1;  2JGP A;  2E1V A;  4CLA A;  2RKV A;  2XR7 A;  2CLA A;  2ZBA A;  1DPB A;  5DU9 A;  1CLA A;  4G22 A;  4JN5 A;  2E9F A;  1PD5 A;  5H8W A;  2IHW A;  2II3 A;  4JN3 A;  2I9D A;  4N72 A;  1L5A A;  1SCZ A;  3U9B A;  4NLE A;  1CIA A;  1NOC B;  1Q9J A;  1XL7 A;  1EAD A;  1EAF A;  5KJS A;  2E1T A;  3FP0 A;  2E1U A;  2XHG A;  4G0B A;  3FOT A;  5DUA A;  2VL7 A;  2II5 A;  5KJV A;  4G2M A;  3CLA A;  1EAB A;  4A15 A;  1EAE A;  3MAE A;  3B2S A;  4KE4 A;  4KEC A;  4HVM A;  5KJW A;  3B30 A;  1EAA A;  1XMD A;  2RKT A; 
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