1XMDA

M335v mutant structure of mouse carnitine octanoyltransferase
Total Genus 225
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
225
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVVVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Peroxisomal carnitine O-octanoyltransferase
publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
total genus 225
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xmdA01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xmdA03
1EAFA 2RKVA 4JN5A 5FANA 1SCZA 2IHWA 1EAAA 2XR7A 4KE4A 2VSQA 1C4TA 2II5A 2XHGA 4G22A 5KJSA 2E1TA 1E2OA 3B2SA 3MAEA 5KJVA 2RKTA 1DPCA 1XL8A 1CIAA 1XMDA 4HVMA 4G2MA 1EADA 1EAEA 1QCAA 4JN3A 1CLAA 4KECA 2E1VA 1Q9JA 1PD5A 5FALA 5KJTA 5KJWA 1XMCA 2E1UA 4CLAA 1EABA 5KJUA 5DUAA 2I9DA 2II3A 3U9FA 1EACA 3FP0A 1XL7A 4G0BA 3CLAA 4N72A 2JGPA 3B30A 3U9BA 5DU9A 1NOCB 1DPDA 3FOTA 5T3EA 2CLAA 2II4A 1DPBA 1Q23A 2BGHA 3L60A 1L5AA 2ZBAA
chains in the Genus database with same CATH superfamily
2J91A 2H3PA 1HY1A 1SCZA 2VSFA 2XR7A 1T1UA 1DCNA 1KQ7A 1C4TA 1U16A 4G22A 3KDZA 5KJSA 5KJVA 3MAEA 3OCEA 2RKTA 3R6VA 1YFMA 1DPCA 1W27A 2H3WA 4HVMA 4HGVA 2RCUA 1Q5NA 1EAEA 1QCAA 4KECA 5FALA 5KJTA 2PTSA 2HVGA 1FUPA 1B8FA 4CLAA 1TJ7A 5KJUA 2O6YA 2I9DA 4V2RA 4EP9A 1EACA 2X75A 1XL7A 4EYWA 5H8WA 3NZ4A 4CQ5A 1S5OA 1T7OA 1I0AA 1T7QA 2FY4A 1T7NA 4C5UA 2O7FA 2ZBAA 2VD6A 3R6QA 5FANA 1FUOA 1EAAA 1GK3A 1Q6XA 2II5A 1GKJA 2NYNA 5EYTA 4FLCA 2QVEA 4G2MA 1RE5A 3TV2A 2FW3A 1K7WA 2O7EA 1TJUA 1CLAA 2E1VA 3R6YA 1TJWA 1EABA 2H4TA 4ADMA 4EFCA 2II3A 3FP0A 4G0BA 4N72A 4EPHA 1J3UA 2JGPA 2DEBA 2O78A 2FY2A 3C8TA 1GKMA 1NOCB 3QBPA 4APBA 3UNVA 4NLEA 1DPBA 2BGHA 2II4A 3L60A 4BABA 2FYOA 1FURA 1L5AA 1T6JA 2NYFA 2RKVA 4JN5A 2E9FA 2FY5A 1YFEA 2QGAB 2VSQA 2RJSA 4KE4A 3KDYA 2XHGA 2E1TA 1HY0A 1E2OA 3B2SA 1XL8A 2YIIA 1XMDA 1K62A 1T6PA 1EADA 1NDBA 1TJVA 1PD5A 1Q9JA 1FUQA 1EB4A 2PFMA 3NO9A 1XMCA 2E1UA 1C3CA 1YISA 5DUAA 2RJRA 3U9FA 3RRPA 3CLAA 2OHYA 4FFXA 3CZOA 1NDIA 3U9BA 1DPDA 5T3EA 2O7BA 4ADLA 2PTQA 3CRW1 4MX2A 1EAFA 2PTRA 3E04A 2O7DA 2IHWA 1U15A 4NSLA 3OCFA 4C6GA 1VDKA 1DOFA 2H3UA 1JSWA 5D6BA 5EYVA 1GK2A 1CIAA 2VL7A 4A15A 5F92A 4EEIA 1XWOA 5F91A 3CRVA 4JN3A 5KJWA 2FY3A 4V2QA 3BHGA 3RD8A 1C3UA 3GTDA 3GZHA 5HW2A 1NDFA 4BAAA 3B30A 1Y2MA 2FUSA 5DU9A 1AUWA 3FOTA 1NM8A 4C5RA 2CLAA 4APAA 1Q23A 4C5SA
chains in the Genus database with same CATH topology
1SCZA 2VSFA 2XR7A 1C4TA 4G22A 5KJSA 5KJVA 3MAEA 2RKTA 1DPCA 4HVMA 1EAEA 1QCAA 4KECA 5FALA 5KJTA 4CLAA 5KJUA 2I9DA 1EACA 1XL7A 5H8WA 2ZBAA 5FANA 1EAAA 2II5A 4G2MA 1CLAA 1EABA 2II3A 3FP0A 4G0BA 4N72A 2JGPA 1NOCB 2II4A 4NLEA 1DPBA 2BGHA 3L60A 1L5AA 2RKVA 4JN5A 2E9FA 4KE4A 2VSQA 2XHGA 2E1TA 1E2OA 3B2SA 1XL8A 1XMDA 1EADA 1Q9JA 1PD5A 1XMCA 2E1UA 2CLAA 5DUAA 3U9FA 3CLAA 3U9BA 1DPDA 5T3EA 3CRW1 1EAFA 2IHWA 1CIAA 2VL7A 4A15A 3CRVA 4JN3A 5KJWA 3B30A 5DU9A 3FOTA 2E1VA 1Q23A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EAF A;  2RKV A;  4JN5 A;  5FAN A;  1SCZ A;  2IHW A;  1EAA A;  2XR7 A;  4KE4 A;  2VSQ A;  1C4T A;  2II5 A;  2XHG A;  4G22 A;  5KJS A;  2E1T A;  1E2O A;  3B2S A;  3MAE A;  5KJV A;  2RKT A;  1DPC A;  1XL8 A;  1CIA A;  1XMD A;  4HVM A;  4G2M A;  1EAD A;  1EAE A;  1QCA A;  4JN3 A;  1CLA A;  4KEC A;  2E1V A;  1Q9J A;  1PD5 A;  5FAL A;  5KJT A;  5KJW A;  1XMC A;  2E1U A;  4CLA A;  1EAB A;  5KJU A;  5DUA A;  2I9D A;  2II3 A;  3U9F A;  1EAC A;  3FP0 A;  1XL7 A;  4G0B A;  3CLA A;  4N72 A;  2JGP A;  3B30 A;  3U9B A;  5DU9 A;  1NOC B;  1DPD A;  3FOT A;  5T3E A;  2CLA A;  2II4 A;  1DPB A;  1Q23 A;  2BGH A;  3L60 A;  1L5A A;  2ZBA A; 
#chains in the Genus database with same CATH topology
 2J91 A;  2H3P A;  1HY1 A;  1SCZ A;  2VSF A;  2XR7 A;  1T1U A;  1DCN A;  1KQ7 A;  1C4T A;  1U16 A;  4G22 A;  3KDZ A;  5KJS A;  5KJV A;  3MAE A;  3OCE A;  2RKT A;  3R6V A;  1YFM A;  1DPC A;  1W27 A;  2H3W A;  4HVM A;  4HGV A;  2RCU A;  1Q5N A;  1EAE A;  1QCA A;  4KEC A;  5FAL A;  5KJT A;  2PTS A;  2HVG A;  1FUP A;  1B8F A;  4CLA A;  1TJ7 A;  5KJU A;  2O6Y A;  2I9D A;  4V2R A;  4EP9 A;  1EAC A;  2X75 A;  1XL7 A;  4EYW A;  5H8W A;  3NZ4 A;  4CQ5 A;  1S5O A;  1T7O A;  1I0A A;  1T7Q A;  2FY4 A;  1T7N A;  4C5U A;  2O7F A;  2ZBA A;  2VD6 A;  3R6Q A;  5FAN A;  1FUO A;  1EAA A;  1GK3 A;  1Q6X A;  2II5 A;  1GKJ A;  2NYN A;  5EYT A;  4FLC A;  2QVE A;  4G2M A;  1RE5 A;  3TV2 A;  2FW3 A;  1K7W A;  2O7E A;  1TJU A;  1CLA A;  2E1V A;  3R6Y A;  1TJW A;  1EAB A;  2H4T A;  4ADM A;  4EFC A;  2II3 A;  3FP0 A;  4G0B A;  4N72 A;  4EPH A;  1J3U A;  2JGP A;  2DEB A;  2O78 A;  2FY2 A;  3C8T A;  1GKM A;  1NOC B;  3QBP A;  4APB A;  3UNV A;  4NLE A;  1DPB A;  2BGH A;  2II4 A;  3L60 A;  4BAB A;  2FYO A;  1FUR A;  1L5A A;  1T6J A;  2NYF A;  2RKV A;  4JN5 A;  2E9F A;  2FY5 A;  1YFE A;  2QGA B;  2VSQ A;  2RJS A;  4KE4 A;  3KDY A;  2XHG A;  2E1T A;  1HY0 A;  1E2O A;  3B2S A;  1XL8 A;  2YII A;  1XMD A;  1K62 A;  1T6P A;  1EAD A;  1NDB A;  1TJV A;  1PD5 A;  1Q9J A;  1FUQ A;  1EB4 A;  2PFM A;  3NO9 A;  1XMC A;  2E1U A;  1C3C A;  1YIS A;  5DUA A;  2RJR A;  3U9F A;  3RRP A;  3CLA A;  2OHY A;  4FFX A;  3CZO A;  1NDI A;  3U9B A;  1DPD A;  5T3E A;  2O7B A;  4ADL A;  2PTQ A;  3CRW 1;  4MX2 A;  1EAF A;  2PTR A;  3E04 A;  2O7D A;  2IHW A;  1U15 A;  4NSL A;  3OCF A;  4C6G A;  1VDK A;  1DOF A;  2H3U A;  1JSW A;  5D6B A;  5EYV A;  1GK2 A;  1CIA A;  2VL7 A;  4A15 A;  5F92 A;  4EEI A;  1XWO A;  5F91 A;  3CRV A;  4JN3 A;  5KJW A;  2FY3 A;  4V2Q A;  3BHG A;  3RD8 A;  1C3U A;  3GTD A;  3GZH A;  5HW2 A;  1NDF A;  4BAA A;  3B30 A;  1Y2M A;  2FUS A;  5DU9 A;  1AUW A;  3FOT A;  1NM8 A;  4C5R A;  2CLA A;  4APA A;  1Q23 A;  4C5S A; 
#chains in the Genus database with same CATH homology
 1SCZ A;  2VSF A;  2XR7 A;  1C4T A;  4G22 A;  5KJS A;  5KJV A;  3MAE A;  2RKT A;  1DPC A;  4HVM A;  1EAE A;  1QCA A;  4KEC A;  5FAL A;  5KJT A;  4CLA A;  5KJU A;  2I9D A;  1EAC A;  1XL7 A;  5H8W A;  2ZBA A;  5FAN A;  1EAA A;  2II5 A;  4G2M A;  1CLA A;  1EAB A;  2II3 A;  3FP0 A;  4G0B A;  4N72 A;  2JGP A;  1NOC B;  2II4 A;  4NLE A;  1DPB A;  2BGH A;  3L60 A;  1L5A A;  2RKV A;  4JN5 A;  2E9F A;  4KE4 A;  2VSQ A;  2XHG A;  2E1T A;  1E2O A;  3B2S A;  1XL8 A;  1XMD A;  1EAD A;  1Q9J A;  1PD5 A;  1XMC A;  2E1U A;  2CLA A;  5DUA A;  3U9F A;  3CLA A;  3U9B A;  1DPD A;  5T3E A;  3CRW 1;  1EAF A;  2IHW A;  1CIA A;  2VL7 A;  4A15 A;  3CRV A;  4JN3 A;  5KJW A;  3B30 A;  5DU9 A;  3FOT A;  2E1V A;  1Q23 A; 
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