1XMDA

M335v mutant structure of mouse carnitine octanoyltransferase
Total Genus 225
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
225
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGCCCDHAPYDAMVVVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Peroxisomal carnitine O-octanoyltransferase
publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 225
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xmdA01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xmdA03
5KJUA 4N72A 2VSQA 1Q9JA 1SCZA 2I9DA 1XL7A 1EABA 1EAEA 1XL8A 2II5A 5KJVA 2E1TA 2RKVA 4KE4A 2JGPA 1XMCA 1Q23A 2ZBAA 3L60A 4G0BA 1CLAA 1E2OA 2BGHA 4KECA 1EAFA 1CIAA 1DPBA 1DPCA 1EACA 1QCAA 3B2SA 3U9BA 2XR7A 1EAAA 4CLAA 5KJSA 2RKTA 3CLAA 4JN3A 1C4TA 2II3A 1L5AA 1XMDA 3MAEA 5KJTA 5FANA 2IHWA 5DU9A 2E1VA 3FP0A 1NOCB 2XHGA 2CLAA 4JN5A 1DPDA 5KJWA 5DUAA 4G2MA 5T3EA 4HVMA 2II4A 3B30A 3U9FA 1PD5A 3FOTA 4G22A 1EADA 5FALA 2E1UA
chains in the Genus database with same CATH superfamily
1DOFA 4N72A 1C3UA 3GZHA 1SCZA 1XL7A 1EABA 1EAEA 3R6QA 3OCEA 2H3PA 2E9FA 4KE4A 1T7OA 1XMCA 3KDYA 4A15A 3QBPA 1HY1A 1RE5A 4BABA 1T1UA 5HW2A 2FUSA 1XWOA 4FLCA 1T7QA 1L5AA 1C4TA 2II3A 1XMDA 4V2RA 1Q5NA 1W27A 1Q6XA 4V2QA 2FY4A 2H4TA 5DU9A 1AUWA 1TJVA 4JN5A 4MX2A 1Y2MA 2VD6A 2FY3A 2FY2A 1PD5A 3FOTA 2VL7A 5KJUA 1T7NA 1Q9JA 2O78A 2PTQA 2I9DA 3RRPA 3CZOA 1K7WA 2PTRA 2OHYA 2X75A 3CRW1 3RD8A 1NDIA 2E1TA 2RKVA 1YFMA 4APAA 2JGPA 1Q23A 4G0BA 1E2OA 4KECA 3TV2A 4NSLA 3UNVA 4ADMA 1DPBA 1QCAA 2NYNA 1FUQA 3R6VA 5KJSA 2RKTA 4EFCA 1B8FA 2J91A 1K62A 4NLEA 4C5RA 3MAEA 4APBA 1NDFA 2O6YA 1KQ7A 1YISA 2QGAB 2E1VA 1FUPA 2CLAA 1DPDA 1DCNA 4C5SA 1NDBA 5DUAA 3R6YA 2II4A 3B30A 3U9FA 4G22A 2YIIA 1GK3A 2RJSA 4FFXA 5EYTA 2FY5A 3CRVA 2VSQA 3NO9A 1T6JA 4C6GA 4EP9A 1XL8A 1GKJA 5F92A 4ADLA 2O7EA 2NYFA 2PFMA 1CLAA 2BGHA 1CIAA 3U9BA 1U15A 1EACA 1J3UA 3CLAA 4JN3A 4HGVA 1U16A 2PTSA 5D6BA 2QVEA 2IHWA 1GK2A 3FP0A 1NOCB 3C8TA 1HY0A 2HVGA 2FW3A 4CQ5A 3E04A 2O7DA 5T3EA 1JSWA 5F91A 2VSFA 1EB4A 1VDKA 2O7FA 1I0AA 2H3WA 3KDZA 2RJRA 2FYOA 2II5A 5KJVA 1TJWA 2DEBA 1S5OA 1TJ7A 4BAAA 2ZBAA 1NM8A 3L60A 4C5UA 2RCUA 1EAFA 1DPCA 4CLAA 3B2SA 3OCFA 2H3UA 5H8WA 2XR7A 1EAAA 3BHGA 4EPHA 5EYVA 5KJTA 3GTDA 2O7BA 5FANA 1FUOA 1T6PA 4EEIA 2XHGA 1YFEA 1FURA 5KJWA 1C3CA 4G2MA 4HVMA 1TJUA 3NZ4A 4EYWA 1GKMA 1EADA 5FALA 2E1UA
chains in the Genus database with same CATH topology
4N72A 1SCZA 1XL7A 1EABA 1EAEA 2E9FA 4KE4A 1XMCA 4A15A 1L5AA 1C4TA 2II3A 1XMDA 5DU9A 4JN5A 1PD5A 3FOTA 2VL7A 5KJUA 1Q9JA 2I9DA 2E1TA 3CRW1 2RKVA 2JGPA 1Q23A 4G0BA 1E2OA 4KECA 1DPBA 1QCAA 5KJSA 2RKTA 4NLEA 3MAEA 2E1VA 2CLAA 1DPDA 5DUAA 2II4A 3B30A 3U9FA 4G22A 3CRVA 2VSQA 1XL8A 1CLAA 2BGHA 1CIAA 3U9BA 1EACA 3CLAA 4JN3A 2IHWA 3FP0A 1NOCB 5T3EA 2VSFA 2II5A 5KJVA 2ZBAA 3L60A 1EAFA 1DPCA 4CLAA 3B2SA 5H8WA 2XR7A 1EAAA 5KJTA 5FANA 2XHGA 5KJWA 4G2MA 4HVMA 1EADA 5FALA 2E1UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KJU A;  4N72 A;  2VSQ A;  1Q9J A;  1SCZ A;  2I9D A;  1XL7 A;  1EAB A;  1EAE A;  1XL8 A;  2II5 A;  5KJV A;  2E1T A;  2RKV A;  4KE4 A;  2JGP A;  1XMC A;  1Q23 A;  2ZBA A;  3L60 A;  4G0B A;  1CLA A;  1E2O A;  2BGH A;  4KEC A;  1EAF A;  1CIA A;  1DPB A;  1DPC A;  1EAC A;  1QCA A;  3B2S A;  3U9B A;  2XR7 A;  1EAA A;  4CLA A;  5KJS A;  2RKT A;  3CLA A;  4JN3 A;  1C4T A;  2II3 A;  1L5A A;  1XMD A;  3MAE A;  5KJT A;  5FAN A;  2IHW A;  5DU9 A;  2E1V A;  3FP0 A;  1NOC B;  2XHG A;  2CLA A;  4JN5 A;  1DPD A;  5KJW A;  5DUA A;  4G2M A;  5T3E A;  4HVM A;  2II4 A;  3B30 A;  3U9F A;  1PD5 A;  3FOT A;  4G22 A;  1EAD A;  5FAL A;  2E1U A; 
#chains in the Genus database with same CATH topology
 1DOF A;  4N72 A;  1C3U A;  3GZH A;  1SCZ A;  1XL7 A;  1EAB A;  1EAE A;  3R6Q A;  3OCE A;  2H3P A;  2E9F A;  4KE4 A;  1T7O A;  1XMC A;  3KDY A;  4A15 A;  3QBP A;  1HY1 A;  1RE5 A;  4BAB A;  1T1U A;  5HW2 A;  2FUS A;  1XWO A;  4FLC A;  1T7Q A;  1L5A A;  1C4T A;  2II3 A;  1XMD A;  4V2R A;  1Q5N A;  1W27 A;  1Q6X A;  4V2Q A;  2FY4 A;  2H4T A;  5DU9 A;  1AUW A;  1TJV A;  4JN5 A;  4MX2 A;  1Y2M A;  2VD6 A;  2FY3 A;  2FY2 A;  1PD5 A;  3FOT A;  2VL7 A;  5KJU A;  1T7N A;  1Q9J A;  2O78 A;  2PTQ A;  2I9D A;  3RRP A;  3CZO A;  1K7W A;  2PTR A;  2OHY A;  2X75 A;  3CRW 1;  3RD8 A;  1NDI A;  2E1T A;  2RKV A;  1YFM A;  4APA A;  2JGP A;  1Q23 A;  4G0B A;  1E2O A;  4KEC A;  3TV2 A;  4NSL A;  3UNV A;  4ADM A;  1DPB A;  1QCA A;  2NYN A;  1FUQ A;  3R6V A;  5KJS A;  2RKT A;  4EFC A;  1B8F A;  2J91 A;  1K62 A;  4NLE A;  4C5R A;  3MAE A;  4APB A;  1NDF A;  2O6Y A;  1KQ7 A;  1YIS A;  2QGA B;  2E1V A;  1FUP A;  2CLA A;  1DPD A;  1DCN A;  4C5S A;  1NDB A;  5DUA A;  3R6Y A;  2II4 A;  3B30 A;  3U9F A;  4G22 A;  2YII A;  1GK3 A;  2RJS A;  4FFX A;  5EYT A;  2FY5 A;  3CRV A;  2VSQ A;  3NO9 A;  1T6J A;  4C6G A;  4EP9 A;  1XL8 A;  1GKJ A;  5F92 A;  4ADL A;  2O7E A;  2NYF A;  2PFM A;  1CLA A;  2BGH A;  1CIA A;  3U9B A;  1U15 A;  1EAC A;  1J3U A;  3CLA A;  4JN3 A;  4HGV A;  1U16 A;  2PTS A;  5D6B A;  2QVE A;  2IHW A;  1GK2 A;  3FP0 A;  1NOC B;  3C8T A;  1HY0 A;  2HVG A;  2FW3 A;  4CQ5 A;  3E04 A;  2O7D A;  5T3E A;  1JSW A;  5F91 A;  2VSF A;  1EB4 A;  1VDK A;  2O7F A;  1I0A A;  2H3W A;  3KDZ A;  2RJR A;  2FYO A;  2II5 A;  5KJV A;  1TJW A;  2DEB A;  1S5O A;  1TJ7 A;  4BAA A;  2ZBA A;  1NM8 A;  3L60 A;  4C5U A;  2RCU A;  1EAF A;  1DPC A;  4CLA A;  3B2S A;  3OCF A;  2H3U A;  5H8W A;  2XR7 A;  1EAA A;  3BHG A;  4EPH A;  5EYV A;  5KJT A;  3GTD A;  2O7B A;  5FAN A;  1FUO A;  1T6P A;  4EEI A;  2XHG A;  1YFE A;  1FUR A;  5KJW A;  1C3C A;  4G2M A;  4HVM A;  1TJU A;  3NZ4 A;  4EYW A;  1GKM A;  1EAD A;  5FAL A;  2E1U A; 
#chains in the Genus database with same CATH homology
 4N72 A;  1SCZ A;  1XL7 A;  1EAB A;  1EAE A;  2E9F A;  4KE4 A;  1XMC A;  4A15 A;  1L5A A;  1C4T A;  2II3 A;  1XMD A;  5DU9 A;  4JN5 A;  1PD5 A;  3FOT A;  2VL7 A;  5KJU A;  1Q9J A;  2I9D A;  2E1T A;  3CRW 1;  2RKV A;  2JGP A;  1Q23 A;  4G0B A;  1E2O A;  4KEC A;  1DPB A;  1QCA A;  5KJS A;  2RKT A;  4NLE A;  3MAE A;  2E1V A;  2CLA A;  1DPD A;  5DUA A;  2II4 A;  3B30 A;  3U9F A;  4G22 A;  3CRV A;  2VSQ A;  1XL8 A;  1CLA A;  2BGH A;  1CIA A;  3U9B A;  1EAC A;  3CLA A;  4JN3 A;  2IHW A;  3FP0 A;  1NOC B;  5T3E A;  2VSF A;  2II5 A;  5KJV A;  2ZBA A;  3L60 A;  1EAF A;  1DPC A;  4CLA A;  3B2S A;  5H8W A;  2XR7 A;  1EAA A;  5KJT A;  5FAN A;  2XHG A;  5KJW A;  4G2M A;  4HVM A;  1EAD A;  5FAL A;  2E1U A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...