2II3A

Crystal structure of a cubic core of the dihydrolipoamide acyltransferase (e2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (bckdc), oxidized coenzyme a-bound form
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
234
structure length
234
Chain Sequence
GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Lipoamide acyltransferase component of branched-chain alpha-
publication title A synchronized substrate-gating mechanism revealed by cubic-core structure of the bovine branched-chain alpha-ketoacid dehydrogenase complex.
pubmed doi rcsb
source organism Bos taurus
molecule tags Transferase
total genus 67
structure length 234
sequence length 234
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 2.3.1.168: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase.
pdb deposition date 2006-09-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2ii3A01
4G0BA 2II4A 5KJUA 1L5AA 5T3EA 4G22A 1CLAA 5FANA 1EAEA 2IHWA 1EACA 1Q23A 3CLAA 4JN3A 1NOCB 1EABA 1EAFA 1EAAA 5DU9A 3MAEA 3B2SA 4KECA 1XMCA 4N72A 4CLAA 1DPBA 1XL8A 2II3A 3U9BA 2RKVA 2II5A 3L60A 5KJVA 5KJSA 1XMDA 2JGPA 5DUAA 4KE4A 2BGHA 1EADA 1QCAA 2VSQA 1Q9JA 2ZBAA 2RKTA 3FOTA 2XHGA 3U9FA 5FALA 5KJWA 2E1UA 1XL7A 1C4TA 4G2MA 4JN5A 4HVMA 1DPDA 1SCZA 2E1TA 2I9DA 5KJTA 2CLAA 1CIAA 3FP0A 1PD5A 1DPCA 2E1VA 1E2OA 3B30A 2XR7A
chains in the Genus database with same CATH superfamily
2II4A 2IHWA 2FY3A 2H3WA 4EPHA 1T1UA 2FYOA 1S5OA 4N72A 2H3UA 3L60A 2H3PA 2ZBAA 2VSQA 2E1UA 1C4TA 4JN5A 2I9DA 5KJTA 3FP0A 1PD5A 2E1VA 2FY5A 1NM8A 5T3EA 4G22A 1CLAA 1Q6XA 1NOCB 1EAFA 1NDBA 4KECA 1XL8A 2FY4A 2II3A 3U9BA 5FALA 3U9FA 2DEBA 1T7OA 4G2MA 2E1TA 2H4TA 5FANA 1L5AA 4JN3A 3MAEA 1XMCA 4CLAA 2RKVA 1T7QA 4EP9A 2II5A 5KJVA 5DUAA 2JGPA 2BGHA 1QCAA 2FW3A 3FOTA 1Q9JA 2RKTA 1XL7A 1DPDA 1SCZA 2CLAA 1DPCA 2FY2A 3B30A 4G0BA 5KJUA 1NDIA 1EAEA 1EACA 1Q23A 3CLAA 1EABA 1EAAA 5DU9A 3B2SA 1DPBA 5KJSA 1XMDA 1T7NA 4KE4A 1NDFA 1EADA 4EYWA 5KJWA 2XHGA 2RCUA 4HVMA 1CIAA 1E2OA 2XR7A
chains in the Genus database with same CATH topology
4G0BA 2II4A 5KJUA 1L5AA 5T3EA 4G22A 1CLAA 5FANA 1EAEA 2IHWA 1EACA 1Q23A 3CLAA 4JN3A 1NOCB 1EABA 1EAFA 1EAAA 5DU9A 3MAEA 3B2SA 4KECA 1XMCA 4N72A 4CLAA 1DPBA 1XL8A 2II3A 3U9BA 2RKVA 2II5A 3L60A 5KJVA 5KJSA 1XMDA 2JGPA 5DUAA 4KE4A 2BGHA 1EADA 1QCAA 2VSQA 1Q9JA 2ZBAA 2RKTA 3FOTA 2XHGA 3U9FA 5FALA 5KJWA 2E1UA 1XL7A 1C4TA 4G2MA 4JN5A 4HVMA 1DPDA 1SCZA 2E1TA 2I9DA 5KJTA 2CLAA 1CIAA 3FP0A 1PD5A 1DPCA 2E1VA 1E2OA 3B30A 2XR7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G0B A;  2II4 A;  5KJU A;  1L5A A;  5T3E A;  4G22 A;  1CLA A;  5FAN A;  1EAE A;  2IHW A;  1EAC A;  1Q23 A;  3CLA A;  4JN3 A;  1NOC B;  1EAB A;  1EAF A;  1EAA A;  5DU9 A;  3MAE A;  3B2S A;  4KEC A;  1XMC A;  4N72 A;  4CLA A;  1DPB A;  1XL8 A;  2II3 A;  3U9B A;  2RKV A;  2II5 A;  3L60 A;  5KJV A;  5KJS A;  1XMD A;  2JGP A;  5DUA A;  4KE4 A;  2BGH A;  1EAD A;  1QCA A;  2VSQ A;  1Q9J A;  2ZBA A;  2RKT A;  3FOT A;  2XHG A;  3U9F A;  5FAL A;  5KJW A;  2E1U A;  1XL7 A;  1C4T A;  4G2M A;  4JN5 A;  4HVM A;  1DPD A;  1SCZ A;  2E1T A;  2I9D A;  5KJT A;  2CLA A;  1CIA A;  3FP0 A;  1PD5 A;  1DPC A;  2E1V A;  1E2O A;  3B30 A;  2XR7 A; 
#chains in the Genus database with same CATH topology
 2II4 A;  2IHW A;  2FY3 A;  2H3W A;  4EPH A;  1T1U A;  2FYO A;  1S5O A;  4N72 A;  2H3U A;  3L60 A;  2H3P A;  2ZBA A;  2VSQ A;  2E1U A;  1C4T A;  4JN5 A;  2I9D A;  5KJT A;  3FP0 A;  1PD5 A;  2E1V A;  2FY5 A;  1NM8 A;  5T3E A;  4G22 A;  1CLA A;  1Q6X A;  1NOC B;  1EAF A;  1NDB A;  4KEC A;  1XL8 A;  2FY4 A;  2II3 A;  3U9B A;  5FAL A;  3U9F A;  2DEB A;  1T7O A;  4G2M A;  2E1T A;  2H4T A;  5FAN A;  1L5A A;  4JN3 A;  3MAE A;  1XMC A;  4CLA A;  2RKV A;  1T7Q A;  4EP9 A;  2II5 A;  5KJV A;  5DUA A;  2JGP A;  2BGH A;  1QCA A;  2FW3 A;  3FOT A;  1Q9J A;  2RKT A;  1XL7 A;  1DPD A;  1SCZ A;  2CLA A;  1DPC A;  2FY2 A;  3B30 A;  4G0B A;  5KJU A;  1NDI A;  1EAE A;  1EAC A;  1Q23 A;  3CLA A;  1EAB A;  1EAA A;  5DU9 A;  3B2S A;  1DPB A;  5KJS A;  1XMD A;  1T7N A;  4KE4 A;  1NDF A;  1EAD A;  4EYW A;  5KJW A;  2XHG A;  2RCU A;  4HVM A;  1CIA A;  1E2O A;  2XR7 A; 
#chains in the Genus database with same CATH homology
 4G0B A;  2II4 A;  5KJU A;  1L5A A;  5T3E A;  4G22 A;  1CLA A;  5FAN A;  1EAE A;  2IHW A;  1EAC A;  1Q23 A;  3CLA A;  4JN3 A;  1NOC B;  1EAB A;  1EAF A;  1EAA A;  5DU9 A;  3MAE A;  3B2S A;  4KEC A;  1XMC A;  4N72 A;  4CLA A;  1DPB A;  1XL8 A;  2II3 A;  3U9B A;  2RKV A;  2II5 A;  3L60 A;  5KJV A;  5KJS A;  1XMD A;  2JGP A;  5DUA A;  4KE4 A;  2BGH A;  1EAD A;  1QCA A;  2VSQ A;  1Q9J A;  2ZBA A;  2RKT A;  3FOT A;  2XHG A;  3U9F A;  5FAL A;  5KJW A;  2E1U A;  1XL7 A;  1C4T A;  4G2M A;  4JN5 A;  4HVM A;  1DPD A;  1SCZ A;  2E1T A;  2I9D A;  5KJT A;  2CLA A;  1CIA A;  3FP0 A;  1PD5 A;  1DPC A;  2E1V A;  1E2O A;  3B30 A;  2XR7 A; 
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