2II3A

Crystal structure of a cubic core of the dihydrolipoamide acyltransferase (e2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (bckdc), oxidized coenzyme a-bound form
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
234
structure length
234
Chain Sequence
GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Lipoamide acyltransferase component of branched-chain alpha-
publication title A synchronized substrate-gating mechanism revealed by cubic-core structure of the bovine branched-chain alpha-ketoacid dehydrogenase complex.
pubmed doi rcsb
source organism Bos taurus
total genus 67
structure length 234
sequence length 234
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 2.3.1.168: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase.
pdb deposition date 2006-09-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2ii3A01
3MAEA 2BGHA 5KJWA 1EADA 2XHGA 2RKVA 2VSQA 5DU9A 3FOTA 1DPDA 2II4A 1EABA 2E1VA 5KJUA 1NOCB 1DPBA 1E2OA 2JGPA 2E1UA 1CLAA 4JN5A 2RKTA 2II3A 3U9FA 4JN3A 1PD5A 1SCZA 1XMDA 4KE4A 1EACA 1EAEA 3FP0A 2ZBAA 3L60A 1QCAA 4KECA 5FANA 1CIAA 1XL7A 2XR7A 3B2SA 3U9BA 5KJTA 5FALA 1XL8A 1Q9JA 1XMCA 5KJVA 4HVMA 4G2MA 2E1TA 2II5A 5T3EA 5KJSA 5DUAA 1L5AA 2IHWA 3CLAA 1C4TA 2I9DA 1Q23A 4G22A 3B30A 1DPCA 2CLAA 1EAFA 4G0BA 4N72A 4CLAA 1EAAA
chains in the Genus database with same CATH superfamily
2VSQA 2FYOA 2E1VA 2JGPA 1CLAA 2H3UA 2H3WA 1SCZA 4KE4A 1EAEA 3L60A 5FANA 1CIAA 1T7QA 3U9BA 5KJVA 4G2MA 4EYWA 3CLAA 2I9DA 1EAFA 1EAAA 2H4TA 1DPDA 2II4A 5KJUA 1E2OA 2RKTA 1T1UA 1XMDA 3FP0A 2ZBAA 1QCAA 1XL7A 1NDFA 4EPHA 1XMCA 1T7NA 2E1TA 2H3PA 2II5A 1L5AA 1C4TA 2CLAA 4G0BA 3MAEA 5KJWA 2FY5A 2FW3A 1Q6XA 1NM8A 2E1UA 4JN5A 4JN3A 1PD5A 2XR7A 5KJTA 1Q9JA 5DUAA 4EP9A 1S5OA 1DPCA 2RKVA 2FY2A 2FY3A 4N72A 4CLAA 1NDBA 2BGHA 1EADA 2XHGA 5DU9A 3FOTA 1T7OA 1EABA 1NOCB 1DPBA 1EACA 4KECA 3B2SA 1NDIA 5FALA 2DEBA 2RCUA 1XL8A 4HVMA 5KJSA 5T3EA 2IHWA 1Q23A 4G22A 3B30A 2FY4A 3U9FA 2II3A
chains in the Genus database with same CATH topology
3MAEA 2BGHA 5KJWA 1EADA 2XHGA 2RKVA 2VSQA 5DU9A 3FOTA 1DPDA 2II4A 1EABA 2E1VA 5KJUA 1NOCB 1DPBA 1E2OA 2JGPA 2E1UA 1CLAA 4JN5A 2RKTA 2II3A 3U9FA 4JN3A 1PD5A 1SCZA 1XMDA 4KE4A 1EACA 1EAEA 3FP0A 2ZBAA 3L60A 1QCAA 4KECA 5FANA 1CIAA 1XL7A 2XR7A 3B2SA 3U9BA 5KJTA 5FALA 1XL8A 1Q9JA 1XMCA 5KJVA 4HVMA 4G2MA 2E1TA 2II5A 5T3EA 5KJSA 5DUAA 1L5AA 2IHWA 3CLAA 1C4TA 2I9DA 1Q23A 4G22A 3B30A 1DPCA 2CLAA 1EAFA 4G0BA 4N72A 4CLAA 1EAAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MAE A;  2BGH A;  5KJW A;  1EAD A;  2XHG A;  2RKV A;  2VSQ A;  5DU9 A;  3FOT A;  1DPD A;  2II4 A;  1EAB A;  2E1V A;  5KJU A;  1NOC B;  1DPB A;  1E2O A;  2JGP A;  2E1U A;  1CLA A;  4JN5 A;  2RKT A;  2II3 A;  3U9F A;  4JN3 A;  1PD5 A;  1SCZ A;  1XMD A;  4KE4 A;  1EAC A;  1EAE A;  3FP0 A;  2ZBA A;  3L60 A;  1QCA A;  4KEC A;  5FAN A;  1CIA A;  1XL7 A;  2XR7 A;  3B2S A;  3U9B A;  5KJT A;  5FAL A;  1XL8 A;  1Q9J A;  1XMC A;  5KJV A;  4HVM A;  4G2M A;  2E1T A;  2II5 A;  5T3E A;  5KJS A;  5DUA A;  1L5A A;  2IHW A;  3CLA A;  1C4T A;  2I9D A;  1Q23 A;  4G22 A;  3B30 A;  1DPC A;  2CLA A;  1EAF A;  4G0B A;  4N72 A;  4CLA A;  1EAA A; 
#chains in the Genus database with same CATH topology
 2VSQ A;  2FYO A;  2E1V A;  2JGP A;  1CLA A;  2H3U A;  2H3W A;  1SCZ A;  4KE4 A;  1EAE A;  3L60 A;  5FAN A;  1CIA A;  1T7Q A;  3U9B A;  5KJV A;  4G2M A;  4EYW A;  3CLA A;  2I9D A;  1EAF A;  1EAA A;  2H4T A;  1DPD A;  2II4 A;  5KJU A;  1E2O A;  2RKT A;  1T1U A;  1XMD A;  3FP0 A;  2ZBA A;  1QCA A;  1XL7 A;  1NDF A;  4EPH A;  1XMC A;  1T7N A;  2E1T A;  2H3P A;  2II5 A;  1L5A A;  1C4T A;  2CLA A;  4G0B A;  3MAE A;  5KJW A;  2FY5 A;  2FW3 A;  1Q6X A;  1NM8 A;  2E1U A;  4JN5 A;  4JN3 A;  1PD5 A;  2XR7 A;  5KJT A;  1Q9J A;  5DUA A;  4EP9 A;  1S5O A;  1DPC A;  2RKV A;  2FY2 A;  2FY3 A;  4N72 A;  4CLA A;  1NDB A;  2BGH A;  1EAD A;  2XHG A;  5DU9 A;  3FOT A;  1T7O A;  1EAB A;  1NOC B;  1DPB A;  1EAC A;  4KEC A;  3B2S A;  1NDI A;  5FAL A;  2DEB A;  2RCU A;  1XL8 A;  4HVM A;  5KJS A;  5T3E A;  2IHW A;  1Q23 A;  4G22 A;  3B30 A;  2FY4 A;  3U9F A;  2II3 A; 
#chains in the Genus database with same CATH homology
 3MAE A;  2BGH A;  5KJW A;  1EAD A;  2XHG A;  2RKV A;  2VSQ A;  5DU9 A;  3FOT A;  1DPD A;  2II4 A;  1EAB A;  2E1V A;  5KJU A;  1NOC B;  1DPB A;  1E2O A;  2JGP A;  2E1U A;  1CLA A;  4JN5 A;  2RKT A;  2II3 A;  3U9F A;  4JN3 A;  1PD5 A;  1SCZ A;  1XMD A;  4KE4 A;  1EAC A;  1EAE A;  3FP0 A;  2ZBA A;  3L60 A;  1QCA A;  4KEC A;  5FAN A;  1CIA A;  1XL7 A;  2XR7 A;  3B2S A;  3U9B A;  5KJT A;  5FAL A;  1XL8 A;  1Q9J A;  1XMC A;  5KJV A;  4HVM A;  4G2M A;  2E1T A;  2II5 A;  5T3E A;  5KJS A;  5DUA A;  1L5A A;  2IHW A;  3CLA A;  1C4T A;  2I9D A;  1Q23 A;  4G22 A;  3B30 A;  1DPC A;  2CLA A;  1EAF A;  4G0B A;  4N72 A;  4CLA A;  1EAA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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