2II3A

Crystal structure of a cubic core of the dihydrolipoamide acyltransferase (e2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (bckdc), oxidized coenzyme a-bound form
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
234
structure length
234
Chain Sequence
GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Lipoamide acyltransferase component of branched-chain alpha-
publication title A synchronized substrate-gating mechanism revealed by cubic-core structure of the bovine branched-chain alpha-ketoacid dehydrogenase complex.
pubmed doi rcsb
source organism Bos taurus
total genus 67
structure length 234
sequence length 234
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 2.3.1.168: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase.
pdb deposition date 2006-09-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2ii3A01
4KECA 5KJVA 2II4A 3U9FA 5KJUA 1CLAA 1C4TA 1EAEA 1DPDA 2RKVA 3B2SA 1EADA 4G22A 5FANA 3MAEA 2IHWA 5KJWA 4HVMA 5KJSA 2XR7A 1CIAA 5DUAA 2CLAA 3L60A 5KJTA 3FP0A 1DPCA 1PD5A 1SCZA 2JGPA 3B30A 2XHGA 3FOTA 2E1TA 1L5AA 2ZBAA 2II3A 4JN3A 2E1UA 3U9BA 4KE4A 1DPBA 5DU9A 2VSQA 4N72A 2E1VA 1EABA 1XMCA 4CLAA 2II5A 1QCAA 1NOCB 1EAAA 1Q9JA 1EAFA 4G0BA 1XMDA 4G2MA 1XL8A 1E2OA 2I9DA 4JN5A 2RKTA 1XL7A 3CLAA 5FALA 5T3EA 2BGHA 1Q23A 1EACA
chains in the Genus database with same CATH superfamily
5KJVA 1T7OA 1CLAA 1C4TA 1EAEA 3B2SA 5FANA 1S5OA 2XR7A 1CIAA 3FP0A 1NDBA 1T7NA 2ZBAA 2RCUA 1NDFA 2H3PA 1T7QA 4CLAA 4EP9A 1XMDA 1E2OA 2I9DA 4JN5A 2RKTA 3CLAA 5T3EA 4KECA 4N72A 1Q23A 1DPDA 4G22A 3MAEA 2IHWA 4HVMA 5KJSA 3L60A 5KJTA 1SCZA 1PD5A 2JGPA 4EPHA 2DEBA 2E1UA 4KE4A 1DPBA 5DU9A 1EABA 1EAAA 1Q6XA 1Q9JA 4G2MA 2FW3A 1XL7A 2FYOA 5FALA 2FY2A 5KJUA 2RKVA 1NDIA 5KJWA 5DUAA 2CLAA 1DPCA 2FY5A 2XHGA 2H3WA 2FY4A 3U9BA 2II5A 1QCAA 1NOCB 1EAFA 1T1UA 1XL8A 1NM8A 2BGHA 2II4A 3U9FA 4EYWA 1EADA 3B30A 3FOTA 2FY3A 2E1TA 1L5AA 2H3UA 2II3A 4JN3A 2VSQA 2E1VA 1XMCA 4G0BA 2H4TA 1EACA
chains in the Genus database with same CATH topology
4KECA 5KJVA 2II4A 3U9FA 5KJUA 1CLAA 1C4TA 1EAEA 1DPDA 2RKVA 3B2SA 1EADA 4G22A 5FANA 3MAEA 2IHWA 5KJWA 4HVMA 5KJSA 2XR7A 1CIAA 5DUAA 2CLAA 3L60A 5KJTA 3FP0A 1DPCA 1PD5A 1SCZA 2JGPA 3B30A 2XHGA 3FOTA 2E1TA 1L5AA 2ZBAA 2II3A 4JN3A 2E1UA 3U9BA 4KE4A 1DPBA 5DU9A 2VSQA 4N72A 2E1VA 1EABA 1XMCA 4CLAA 2II5A 1QCAA 1NOCB 1EAAA 1Q9JA 1EAFA 4G0BA 1XMDA 4G2MA 1XL8A 1E2OA 2I9DA 4JN5A 2RKTA 1XL7A 3CLAA 5FALA 5T3EA 2BGHA 1Q23A 1EACA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KEC A;  5KJV A;  2II4 A;  3U9F A;  5KJU A;  1CLA A;  1C4T A;  1EAE A;  1DPD A;  2RKV A;  3B2S A;  1EAD A;  4G22 A;  5FAN A;  3MAE A;  2IHW A;  5KJW A;  4HVM A;  5KJS A;  2XR7 A;  1CIA A;  5DUA A;  2CLA A;  3L60 A;  5KJT A;  3FP0 A;  1DPC A;  1PD5 A;  1SCZ A;  2JGP A;  3B30 A;  2XHG A;  3FOT A;  2E1T A;  1L5A A;  2ZBA A;  2II3 A;  4JN3 A;  2E1U A;  3U9B A;  4KE4 A;  1DPB A;  5DU9 A;  2VSQ A;  4N72 A;  2E1V A;  1EAB A;  1XMC A;  4CLA A;  2II5 A;  1QCA A;  1NOC B;  1EAA A;  1Q9J A;  1EAF A;  4G0B A;  1XMD A;  4G2M A;  1XL8 A;  1E2O A;  2I9D A;  4JN5 A;  2RKT A;  1XL7 A;  3CLA A;  5FAL A;  5T3E A;  2BGH A;  1Q23 A;  1EAC A; 
#chains in the Genus database with same CATH topology
 5KJV A;  1T7O A;  1CLA A;  1C4T A;  1EAE A;  3B2S A;  5FAN A;  1S5O A;  2XR7 A;  1CIA A;  3FP0 A;  1NDB A;  1T7N A;  2ZBA A;  2RCU A;  1NDF A;  2H3P A;  1T7Q A;  4CLA A;  4EP9 A;  1XMD A;  1E2O A;  2I9D A;  4JN5 A;  2RKT A;  3CLA A;  5T3E A;  4KEC A;  4N72 A;  1Q23 A;  1DPD A;  4G22 A;  3MAE A;  2IHW A;  4HVM A;  5KJS A;  3L60 A;  5KJT A;  1SCZ A;  1PD5 A;  2JGP A;  4EPH A;  2DEB A;  2E1U A;  4KE4 A;  1DPB A;  5DU9 A;  1EAB A;  1EAA A;  1Q6X A;  1Q9J A;  4G2M A;  2FW3 A;  1XL7 A;  2FYO A;  5FAL A;  2FY2 A;  5KJU A;  2RKV A;  1NDI A;  5KJW A;  5DUA A;  2CLA A;  1DPC A;  2FY5 A;  2XHG A;  2H3W A;  2FY4 A;  3U9B A;  2II5 A;  1QCA A;  1NOC B;  1EAF A;  1T1U A;  1XL8 A;  1NM8 A;  2BGH A;  2II4 A;  3U9F A;  4EYW A;  1EAD A;  3B30 A;  3FOT A;  2FY3 A;  2E1T A;  1L5A A;  2H3U A;  2II3 A;  4JN3 A;  2VSQ A;  2E1V A;  1XMC A;  4G0B A;  2H4T A;  1EAC A; 
#chains in the Genus database with same CATH homology
 4KEC A;  5KJV A;  2II4 A;  3U9F A;  5KJU A;  1CLA A;  1C4T A;  1EAE A;  1DPD A;  2RKV A;  3B2S A;  1EAD A;  4G22 A;  5FAN A;  3MAE A;  2IHW A;  5KJW A;  4HVM A;  5KJS A;  2XR7 A;  1CIA A;  5DUA A;  2CLA A;  3L60 A;  5KJT A;  3FP0 A;  1DPC A;  1PD5 A;  1SCZ A;  2JGP A;  3B30 A;  2XHG A;  3FOT A;  2E1T A;  1L5A A;  2ZBA A;  2II3 A;  4JN3 A;  2E1U A;  3U9B A;  4KE4 A;  1DPB A;  5DU9 A;  2VSQ A;  4N72 A;  2E1V A;  1EAB A;  1XMC A;  4CLA A;  2II5 A;  1QCA A;  1NOC B;  1EAA A;  1Q9J A;  1EAF A;  4G0B A;  1XMD A;  4G2M A;  1XL8 A;  1E2O A;  2I9D A;  4JN5 A;  2RKT A;  1XL7 A;  3CLA A;  5FAL A;  5T3E A;  2BGH A;  1Q23 A;  1EAC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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