2II3A

Crystal structure of a cubic core of the dihydrolipoamide acyltransferase (e2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (bckdc), oxidized coenzyme a-bound form
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
234
structure length
234
Chain Sequence
GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Bos taurus
publication title A synchronized substrate-gating mechanism revealed by cubic-core structure of the bovine branched-chain alpha-ketoacid dehydrogenase complex.
pubmed doi rcsb
molecule keywords Lipoamide acyltransferase component of branched-chain alpha-
total genus 67
structure length 234
sequence length 234
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 2.3.1.168: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase.
pdb deposition date 2006-09-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2ii3A01
4G0BA 5DU9A 2XHGA 1SCZA 1EAFA 2CLAA 2ZBAA 4N72A 2E1UA 1C4TA 1CIAA 5KJUA 3B30A 2II3A 1EAAA 2II4A 2RKVA 5KJWA 1E2OA 1NOCB 4JN5A 1EABA 1QCAA 1Q23A 5KJVA 1XL8A 3FP0A 4JN3A 2VSQA 1DPDA 2JGPA 1XMCA 4KECA 4HVMA 1EADA 1DPCA 5T3EA 4G22A 2XR7A 1PD5A 4G2MA 1L5AA 2IHWA 1EAEA 1Q9JA 3FOTA 2I9DA 4KE4A 2BGHA 5KJTA 1DPBA 1EACA 4CLAA 3CLAA 2RKTA 3U9FA 5FANA 2E1VA 5KJSA 3L60A 3U9BA 2E1TA 3B2SA 1CLAA 1XMDA 2II5A 3MAEA 5FALA 5DUAA 1XL7A
chains in the Genus database with same CATH superfamily
2FY2A 4EP9A 1EAAA 2RKVA 2H3WA 5KJWA 1E2OA 4JN5A 1EABA 1QCAA 1T7OA 4JN3A 2H4TA 1DPDA 2JGPA 1EADA 5T3EA 2XR7A 4KE4A 2FY4A 3CLAA 1NM8A 2DEBA 5KJSA 2E1TA 3MAEA 2II5A 5DUAA 5DU9A 1EAFA 4N72A 5KJVA 1XL8A 4KECA 4HVMA 4G22A 1Q9JA 2I9DA 4EYWA 2BGHA 1DPBA 1EACA 2RKTA 2H3PA 3U9BA 5FALA 5KJUA 4G0BA 1T1UA 1NDIA 2FY5A 2CLAA 2II3A 1Q23A 1DPCA 1PD5A 4G2MA 1NDBA 1S5OA 3FOTA 1T7NA 4CLAA 3U9FA 1T7QA 1XL7A 2XHGA 1SCZA 2ZBAA 2E1UA 1C4TA 1CIAA 3B30A 2II4A 1NOCB 1NDFA 3FP0A 2VSQA 2FY3A 1XMCA 1L5AA 2RCUA 2IHWA 1EAEA 1Q6XA 2FYOA 5KJTA 2FW3A 2H3UA 5FANA 2E1VA 3L60A 3B2SA 1CLAA 1XMDA 4EPHA
chains in the Genus database with same CATH topology
4G0BA 5DU9A 2XHGA 1SCZA 1EAFA 2CLAA 2ZBAA 4N72A 2E1UA 1C4TA 1CIAA 5KJUA 3B30A 2II3A 1EAAA 2II4A 2RKVA 5KJWA 1E2OA 1NOCB 4JN5A 1EABA 1QCAA 1Q23A 5KJVA 1XL8A 3FP0A 4JN3A 2VSQA 1DPDA 2JGPA 1XMCA 4KECA 4HVMA 1EADA 1DPCA 5T3EA 4G22A 2XR7A 1PD5A 4G2MA 1L5AA 2IHWA 1EAEA 1Q9JA 3FOTA 2I9DA 4KE4A 2BGHA 5KJTA 1DPBA 1EACA 4CLAA 3CLAA 2RKTA 3U9FA 5FANA 2E1VA 5KJSA 3L60A 3U9BA 2E1TA 3B2SA 1CLAA 1XMDA 2II5A 3MAEA 5FALA 5DUAA 1XL7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G0B A;  5DU9 A;  2XHG A;  1SCZ A;  1EAF A;  2CLA A;  2ZBA A;  4N72 A;  2E1U A;  1C4T A;  1CIA A;  5KJU A;  3B30 A;  2II3 A;  1EAA A;  2II4 A;  2RKV A;  5KJW A;  1E2O A;  1NOC B;  4JN5 A;  1EAB A;  1QCA A;  1Q23 A;  5KJV A;  1XL8 A;  3FP0 A;  4JN3 A;  2VSQ A;  1DPD A;  2JGP A;  1XMC A;  4KEC A;  4HVM A;  1EAD A;  1DPC A;  5T3E A;  4G22 A;  2XR7 A;  1PD5 A;  4G2M A;  1L5A A;  2IHW A;  1EAE A;  1Q9J A;  3FOT A;  2I9D A;  4KE4 A;  2BGH A;  5KJT A;  1DPB A;  1EAC A;  4CLA A;  3CLA A;  2RKT A;  3U9F A;  5FAN A;  2E1V A;  5KJS A;  3L60 A;  3U9B A;  2E1T A;  3B2S A;  1CLA A;  1XMD A;  2II5 A;  3MAE A;  5FAL A;  5DUA A;  1XL7 A; 
#chains in the Genus database with same CATH topology
 2FY2 A;  4EP9 A;  1EAA A;  2RKV A;  2H3W A;  5KJW A;  1E2O A;  4JN5 A;  1EAB A;  1QCA A;  1T7O A;  4JN3 A;  2H4T A;  1DPD A;  2JGP A;  1EAD A;  5T3E A;  2XR7 A;  4KE4 A;  2FY4 A;  3CLA A;  1NM8 A;  2DEB A;  5KJS A;  2E1T A;  3MAE A;  2II5 A;  5DUA A;  5DU9 A;  1EAF A;  4N72 A;  5KJV A;  1XL8 A;  4KEC A;  4HVM A;  4G22 A;  1Q9J A;  2I9D A;  4EYW A;  2BGH A;  1DPB A;  1EAC A;  2RKT A;  2H3P A;  3U9B A;  5FAL A;  5KJU A;  4G0B A;  1T1U A;  1NDI A;  2FY5 A;  2CLA A;  2II3 A;  1Q23 A;  1DPC A;  1PD5 A;  4G2M A;  1NDB A;  1S5O A;  3FOT A;  1T7N A;  4CLA A;  3U9F A;  1T7Q A;  1XL7 A;  2XHG A;  1SCZ A;  2ZBA A;  2E1U A;  1C4T A;  1CIA A;  3B30 A;  2II4 A;  1NOC B;  1NDF A;  3FP0 A;  2VSQ A;  2FY3 A;  1XMC A;  1L5A A;  2RCU A;  2IHW A;  1EAE A;  1Q6X A;  2FYO A;  5KJT A;  2FW3 A;  2H3U A;  5FAN A;  2E1V A;  3L60 A;  3B2S A;  1CLA A;  1XMD A;  4EPH A; 
#chains in the Genus database with same CATH homology
 4G0B A;  5DU9 A;  2XHG A;  1SCZ A;  1EAF A;  2CLA A;  2ZBA A;  4N72 A;  2E1U A;  1C4T A;  1CIA A;  5KJU A;  3B30 A;  2II3 A;  1EAA A;  2II4 A;  2RKV A;  5KJW A;  1E2O A;  1NOC B;  4JN5 A;  1EAB A;  1QCA A;  1Q23 A;  5KJV A;  1XL8 A;  3FP0 A;  4JN3 A;  2VSQ A;  1DPD A;  2JGP A;  1XMC A;  4KEC A;  4HVM A;  1EAD A;  1DPC A;  5T3E A;  4G22 A;  2XR7 A;  1PD5 A;  4G2M A;  1L5A A;  2IHW A;  1EAE A;  1Q9J A;  3FOT A;  2I9D A;  4KE4 A;  2BGH A;  5KJT A;  1DPB A;  1EAC A;  4CLA A;  3CLA A;  2RKT A;  3U9F A;  5FAN A;  2E1V A;  5KJS A;  3L60 A;  3U9B A;  2E1T A;  3B2S A;  1CLA A;  1XMD A;  2II5 A;  3MAE A;  5FAL A;  5DUA A;  1XL7 A; 
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similar chains in the Genus database (?% sequence similarity)
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