1S5OA

Structural and mutational characterization of l-carnitine binding to human carnitine acetyltransferase
Total Genus 215
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
215
sequence length
591
structure length
591
Chain Sequence
HHTDPLPRLPVPPLQQSLDHYLKALQPIVSEEEWAHTKQLVDEFQASGGVGERLQKGLERRARKTENWLSEWWLKTAYLQYRQPVVIYSSPGVMLPKQDFVDLQGQLRFAAKLIEGVLDFKVMIDNETLPVEYLGGKPLCMNQYYQILSSCRVPGPKQDTVSNFSKTKKPPTHITVVHNYQFFELDVYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKDKVNRDSVRSIQKSIFTVCLDATMPRVSEDVYRSHVAGQMLHGGGSRLNSGNRWFDKTLQFIVAEDGSCGLVYEHAAAEGPPIVTLLDYVIEYTKKPELVRSPMVPLPMPKKLRFNITPEIKSDIEKAKQNLSIMIQDLDITVMVFHHFGKDFPKSEKLSPDAFIQMALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASMDSLTFVKAMDDSSVTEHQKVELLRKAVQAHRGYTDRAIRGEAFDRHLLGLKLQAIEDLVSTPDIFMDTSYAIAMHFHLSTSQVPAKTDCVMFFGPVVPDGYGVCYNPMEAHINFSLSAYNSCAETNAARLAHYLEKALLDMRALLQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords carnitine acetyltransferase isoform 2
publication title Structural and mutational characterization of l-carnitine binding to human carnitine acetyltransferase.
pubmed doi rcsb
source organism Homo sapiens
total genus 215
structure length 591
sequence length 591
ec nomenclature ec 2.3.1.7: Carnitine O-acetyltransferase.
pdb deposition date 2004-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1s5oA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1s5oA02
2H3PA 1T1UA 1Q6XA 2FY5A 2FY2A 1T7NA 2H4TA 1T7QA 4EP9A 2H3UA 1T7OA 1S5OA 4EPHA 4EYWA 2DEBA 2FYOA 1NDBA 2FY4A 2RCUA 2FY3A 2FW3A 1NDIA 1NM8A 2H3WA 1NDFA
chains in the Genus database with same CATH superfamily
4KECA 1Q23A 1Q6XA 1EADA 5KJTA 2I9DA 4EP9A 2H3UA 1CIAA 1DPCA 1PD5A 2VSQA 4EYWA 2DEBA 3CLAA 2CLAA 2XHGA 2FY3A 1XL7A 1NDIA 3U9FA 4KE4A 1NDFA 1C4TA 4G0BA 2RKVA 2E1TA 3FOTA 4G22A 4N72A 2JGPA 4CLAA 2II3A 2IHWA 4EPHA 2FYOA 1NDBA 4G2MA 2RCUA 1XMCA 1E2OA 2RKTA 2II4A 1NM8A 2H3PA 3B2SA 5DU9A 1L5AA 2FY5A 5KJUA 2FY2A 5KJSA 1T7NA 1DPBA 4JN5A 2BGHA 3U9BA 1XL8A 1QCAA 2E1VA 1EABA 5FANA 3B30A 2H3WA 1EAFA 4JN3A 1T1UA 4HVMA 1XMDA 2E1UA 1EAEA 1EACA 5T3EA 1CLAA 2H4TA 1T7QA 5KJWA 1T7OA 5FALA 1S5OA 1DPDA 3MAEA 2ZBAA 3FP0A 1NOCB 5DUAA 2XR7A 2FY4A 3L60A 2II5A 1EAAA 1Q9JA 2FW3A 1SCZA 5KJVA
chains in the Genus database with same CATH topology
2H3PA 4JN3A 1T1UA 5DU9A 4HVMA 1Q6XA 1L5AA 2FY5A 5T3EA 2FY2A 3FOTA 1T7NA 2H4TA 1T7QA 4EP9A 2H3UA 1T7OA 4JN5A 2JGPA 1S5OA 4EPHA 2VSQA 4EYWA 2DEBA 3FP0A 5DUAA 2FYOA 1NDBA 2FY4A 2RCUA 2FY3A 2XHGA 1Q9JA 1NDIA 2FW3A 1NM8A 2H3WA 1NDFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2H3P A;  1T1U A;  1Q6X A;  2FY5 A;  2FY2 A;  1T7N A;  2H4T A;  1T7Q A;  4EP9 A;  2H3U A;  1T7O A;  1S5O A;  4EPH A;  4EYW A;  2DEB A;  2FYO A;  1NDB A;  2FY4 A;  2RCU A;  2FY3 A;  2FW3 A;  1NDI A;  1NM8 A;  2H3W A;  1NDF A; 
#chains in the Genus database with same CATH topology
 4KEC A;  1Q23 A;  1Q6X A;  1EAD A;  5KJT A;  2I9D A;  4EP9 A;  2H3U A;  1CIA A;  1DPC A;  1PD5 A;  2VSQ A;  4EYW A;  2DEB A;  3CLA A;  2CLA A;  2XHG A;  2FY3 A;  1XL7 A;  1NDI A;  3U9F A;  4KE4 A;  1NDF A;  1C4T A;  4G0B A;  2RKV A;  2E1T A;  3FOT A;  4G22 A;  4N72 A;  2JGP A;  4CLA A;  2II3 A;  2IHW A;  4EPH A;  2FYO A;  1NDB A;  4G2M A;  2RCU A;  1XMC A;  1E2O A;  2RKT A;  2II4 A;  1NM8 A;  2H3P A;  3B2S A;  5DU9 A;  1L5A A;  2FY5 A;  5KJU A;  2FY2 A;  5KJS A;  1T7N A;  1DPB A;  4JN5 A;  2BGH A;  3U9B A;  1XL8 A;  1QCA A;  2E1V A;  1EAB A;  5FAN A;  3B30 A;  2H3W A;  1EAF A;  4JN3 A;  1T1U A;  4HVM A;  1XMD A;  2E1U A;  1EAE A;  1EAC A;  5T3E A;  1CLA A;  2H4T A;  1T7Q A;  5KJW A;  1T7O A;  5FAL A;  1S5O A;  1DPD A;  3MAE A;  2ZBA A;  3FP0 A;  1NOC B;  5DUA A;  2XR7 A;  2FY4 A;  3L60 A;  2II5 A;  1EAA A;  1Q9J A;  2FW3 A;  1SCZ A;  5KJV A; 
#chains in the Genus database with same CATH homology
 2H3P A;  4JN3 A;  1T1U A;  5DU9 A;  4HVM A;  1Q6X A;  1L5A A;  2FY5 A;  5T3E A;  2FY2 A;  3FOT A;  1T7N A;  2H4T A;  1T7Q A;  4EP9 A;  2H3U A;  1T7O A;  4JN5 A;  2JGP A;  1S5O A;  4EPH A;  2VSQ A;  4EYW A;  2DEB A;  3FP0 A;  5DUA A;  2FYO A;  1NDB A;  2FY4 A;  2RCU A;  2FY3 A;  2XHG A;  1Q9J A;  1NDI A;  2FW3 A;  1NM8 A;  2H3W A;  1NDF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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