1XMCA

C323m mutant structure of mouse carnitine octanoyltransferase
Total Genus 221
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
221
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGMCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
source organism Mus musculus
publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
molecule keywords Peroxisomal carnitine O-octanoyltransferase
total genus 221
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xmcA01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xmcA03
5T3EA 4JN5A 1XL8A 3FP0A 2XR7A 1DPDA 2I9DA 1EACA 1DPBA 3B2SA 4KE4A 1EAAA 3FOTA 4N72A 2II4A 2XHGA 4G22A 3U9FA 4KECA 4HVMA 1XMDA 1XMCA 1Q23A 3MAEA 1L5AA 5KJUA 2IHWA 5KJWA 1E2OA 3B30A 2VSQA 2II3A 2II5A 3L60A 1C4TA 1NOCB 2E1TA 5KJSA 1EAEA 1EABA 2CLAA 2RKVA 5DUAA 1SCZA 2BGHA 1EADA 1DPCA 5FANA 4JN3A 1XL7A 3U9BA 2ZBAA 1CIAA 5KJTA 2E1UA 5DU9A 4CLAA 1EAFA 5KJVA 1Q9JA 1QCAA 5FALA 2E1VA 4G0BA 2RKTA 3CLAA 4G2MA 1PD5A 2JGPA 1CLAA
chains in the Genus database with same CATH superfamily
4JN5A 1XL8A 2J91A 2PTQA 1HY1A 3KDYA 1VDKA 2QGAB 3R6QA 2DEBA 1U16A 1XWOA 2II4A 1C3UA 2O7DA 2XHGA 4EPHA 4EFCA 4KECA 2VSFA 4NLEA 1DOFA 1XMDA 5F91A 3NO9A 3RD8A 3OCFA 1K62A 3CZOA 1Q6XA 2II5A 1J3UA 4ADLA 2FY2A 2E1TA 1FUQA 5DUAA 5FANA 1I0AA 2VD6A 4EEIA 2FY3A 2ZBAA 4EP9A 1Y2MA 5DU9A 3C8TA 5FALA 4C5RA 3CLAA 3CRW1 4FFXA 2H3UA 1HY0A 1Q5NA 3FP0A 1DPDA 2O7FA 5D6BA 3UNVA 1EAAA 2FYOA 3FOTA 3KDZA 1NM8A 4HVMA 1FUOA 1YFEA 1AUWA 1Q23A 4A15A 2O6YA 2NYNA 4C5SA 2VSQA 1NDFA 3L60A 4BAAA 1TJVA 2HVGA 2RKVA 2O78A 4V2QA 4APAA 3OCEA 1KQ7A 1DPCA 1EADA 4EYWA 4C5UA 1GKJA 1XL7A 3U9BA 1B8FA 1GK2A 1NDBA 2E1UA 4CLAA 3TV2A 1K7WA 1QCAA 1FURA 1JSWA 4G2MA 2II3A 5KJUA 1CLAA 4V2RA 5T3EA 2RJRA 2I9DA 3B2SA 1EACA 1DPBA 5HW2A 4KE4A 2O7EA 4N72A 4ADMA 1NDIA 4G22A 4BABA 2PTSA 3U9FA 2NYFA 1XMCA 1GKMA 2E9FA 4HGVA 2RCUA 3MAEA 1L5AA 5KJWA 3B30A 2OHYA 2FUSA 3E04A 3CRVA 3QBPA 1C4TA 2FW3A 1EB4A 1U15A 2O7BA 4APBA 1TJUA 5EYVA 3GZHA 5KJSA 1EABA 3RRPA 1SCZA 4CQ5A 1YISA 5H8WA 2FY5A 5F92A 4JN3A 1T6JA 1YFMA 1CIAA 2FY4A 3BHGA 2PTRA 5KJTA 1Q9JA 2H3WA 4G0BA 3GTDA 2H3PA 2QVEA 1TJWA 1GK3A 2XR7A 4NSLA 2PFMA 1TJ7A 2RJSA 2VL7A 1T6PA 1W27A 2IHWA 1E2OA 1NOCB 2X75A 1DCNA 1EAEA 2CLAA 1FUPA 1T7OA 3NZ4A 1T7QA 2BGHA 4MX2A 1RE5A 2H4TA 3R6VA 2YIIA 5EYTA 1T7NA 5KJVA 4C6GA 1EAFA 1T1UA 4FLCA 1S5OA 2E1VA 3R6YA 2RKTA 1C3CA 1PD5A 2JGPA
chains in the Genus database with same CATH topology
4JN5A 1XL8A 2II4A 2XHGA 4KECA 4NLEA 2VSFA 1XMDA 2II5A 2E1TA 5DUAA 5FANA 2ZBAA 5DU9A 5FALA 3CLAA 3CRW1 3FP0A 1DPDA 1EAAA 3FOTA 4HVMA 1Q23A 4A15A 2VSQA 3L60A 2RKVA 1DPCA 1EADA 1XL7A 3U9BA 2E1UA 4CLAA 1QCAA 5KJUA 4G2MA 2II3A 1CLAA 5T3EA 2I9DA 3B2SA 1EACA 1DPBA 4KE4A 4N72A 4G22A 3U9FA 1XMCA 2E9FA 3MAEA 1L5AA 5KJWA 3B30A 3CRVA 1C4TA 5KJSA 1EABA 1SCZA 5H8WA 4JN3A 1CIAA 5KJTA 1Q9JA 4G0BA 2XR7A 2VL7A 2IHWA 1E2OA 1NOCB 1EAEA 2CLAA 2BGHA 5KJVA 1EAFA 2E1VA 2RKTA 1PD5A 2JGPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5T3E A;  4JN5 A;  1XL8 A;  3FP0 A;  2XR7 A;  1DPD A;  2I9D A;  1EAC A;  1DPB A;  3B2S A;  4KE4 A;  1EAA A;  3FOT A;  4N72 A;  2II4 A;  2XHG A;  4G22 A;  3U9F A;  4KEC A;  4HVM A;  1XMD A;  1XMC A;  1Q23 A;  3MAE A;  1L5A A;  5KJU A;  2IHW A;  5KJW A;  1E2O A;  3B30 A;  2VSQ A;  2II3 A;  2II5 A;  3L60 A;  1C4T A;  1NOC B;  2E1T A;  5KJS A;  1EAE A;  1EAB A;  2CLA A;  2RKV A;  5DUA A;  1SCZ A;  2BGH A;  1EAD A;  1DPC A;  5FAN A;  4JN3 A;  1XL7 A;  3U9B A;  2ZBA A;  1CIA A;  5KJT A;  2E1U A;  5DU9 A;  4CLA A;  1EAF A;  5KJV A;  1Q9J A;  1QCA A;  5FAL A;  2E1V A;  4G0B A;  2RKT A;  3CLA A;  4G2M A;  1PD5 A;  2JGP A;  1CLA A; 
#chains in the Genus database with same CATH topology
 4JN5 A;  1XL8 A;  2J91 A;  2PTQ A;  1HY1 A;  3KDY A;  1VDK A;  2QGA B;  3R6Q A;  2DEB A;  1U16 A;  1XWO A;  2II4 A;  1C3U A;  2O7D A;  2XHG A;  4EPH A;  4EFC A;  4KEC A;  2VSF A;  4NLE A;  1DOF A;  1XMD A;  5F91 A;  3NO9 A;  3RD8 A;  3OCF A;  1K62 A;  3CZO A;  1Q6X A;  2II5 A;  1J3U A;  4ADL A;  2FY2 A;  2E1T A;  1FUQ A;  5DUA A;  5FAN A;  1I0A A;  2VD6 A;  4EEI A;  2FY3 A;  2ZBA A;  4EP9 A;  1Y2M A;  5DU9 A;  3C8T A;  5FAL A;  4C5R A;  3CLA A;  3CRW 1;  4FFX A;  2H3U A;  1HY0 A;  1Q5N A;  3FP0 A;  1DPD A;  2O7F A;  5D6B A;  3UNV A;  1EAA A;  2FYO A;  3FOT A;  3KDZ A;  1NM8 A;  4HVM A;  1FUO A;  1YFE A;  1AUW A;  1Q23 A;  4A15 A;  2O6Y A;  2NYN A;  4C5S A;  2VSQ A;  1NDF A;  3L60 A;  4BAA A;  1TJV A;  2HVG A;  2RKV A;  2O78 A;  4V2Q A;  4APA A;  3OCE A;  1KQ7 A;  1DPC A;  1EAD A;  4EYW A;  4C5U A;  1GKJ A;  1XL7 A;  3U9B A;  1B8F A;  1GK2 A;  1NDB A;  2E1U A;  4CLA A;  3TV2 A;  1K7W A;  1QCA A;  1FUR A;  1JSW A;  4G2M A;  2II3 A;  5KJU A;  1CLA A;  4V2R A;  5T3E A;  2RJR A;  2I9D A;  3B2S A;  1EAC A;  1DPB A;  5HW2 A;  4KE4 A;  2O7E A;  4N72 A;  4ADM A;  1NDI A;  4G22 A;  4BAB A;  2PTS A;  3U9F A;  2NYF A;  1XMC A;  1GKM A;  2E9F A;  4HGV A;  2RCU A;  3MAE A;  1L5A A;  5KJW A;  3B30 A;  2OHY A;  2FUS A;  3E04 A;  3CRV A;  3QBP A;  1C4T A;  2FW3 A;  1EB4 A;  1U15 A;  2O7B A;  4APB A;  1TJU A;  5EYV A;  3GZH A;  5KJS A;  1EAB A;  3RRP A;  1SCZ A;  4CQ5 A;  1YIS A;  5H8W A;  2FY5 A;  5F92 A;  4JN3 A;  1T6J A;  1YFM A;  1CIA A;  2FY4 A;  3BHG A;  2PTR A;  5KJT A;  1Q9J A;  2H3W A;  4G0B A;  3GTD A;  2H3P A;  2QVE A;  1TJW A;  1GK3 A;  2XR7 A;  4NSL A;  2PFM A;  1TJ7 A;  2RJS A;  2VL7 A;  1T6P A;  1W27 A;  2IHW A;  1E2O A;  1NOC B;  2X75 A;  1DCN A;  1EAE A;  2CLA A;  1FUP A;  1T7O A;  3NZ4 A;  1T7Q A;  2BGH A;  4MX2 A;  1RE5 A;  2H4T A;  3R6V A;  2YII A;  5EYT A;  1T7N A;  5KJV A;  4C6G A;  1EAF A;  1T1U A;  4FLC A;  1S5O A;  2E1V A;  3R6Y A;  2RKT A;  1C3C A;  1PD5 A;  2JGP A; 
#chains in the Genus database with same CATH homology
 4JN5 A;  1XL8 A;  2II4 A;  2XHG A;  4KEC A;  4NLE A;  2VSF A;  1XMD A;  2II5 A;  2E1T A;  5DUA A;  5FAN A;  2ZBA A;  5DU9 A;  5FAL A;  3CLA A;  3CRW 1;  3FP0 A;  1DPD A;  1EAA A;  3FOT A;  4HVM A;  1Q23 A;  4A15 A;  2VSQ A;  3L60 A;  2RKV A;  1DPC A;  1EAD A;  1XL7 A;  3U9B A;  2E1U A;  4CLA A;  1QCA A;  5KJU A;  4G2M A;  2II3 A;  1CLA A;  5T3E A;  2I9D A;  3B2S A;  1EAC A;  1DPB A;  4KE4 A;  4N72 A;  4G22 A;  3U9F A;  1XMC A;  2E9F A;  3MAE A;  1L5A A;  5KJW A;  3B30 A;  3CRV A;  1C4T A;  5KJS A;  1EAB A;  1SCZ A;  5H8W A;  4JN3 A;  1CIA A;  5KJT A;  1Q9J A;  4G0B A;  2XR7 A;  2VL7 A;  2IHW A;  1E2O A;  1NOC B;  1EAE A;  2CLA A;  2BGH A;  5KJV A;  1EAF A;  2E1V A;  2RKT A;  1PD5 A;  2JGP A; 
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