1XMCA

C323m mutant structure of mouse carnitine octanoyltransferase
Total Genus 221
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
221
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGMCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Peroxisomal carnitine O-octanoyltransferase
publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
total genus 221
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xmcA01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xmcA03
2RKVA 2VSQA 5DU9A 2I9DA 3MAEA 1L5AA 1DPDA 4N72A 2XHGA 1EACA 1EAFA 5FANA 2BGHA 1C4TA 2E1TA 1XL8A 4G2MA 2II4A 2RKTA 4G22A 1E2OA 5KJVA 2IHWA 4KE4A 5KJSA 2E1VA 1DPBA 1CIAA 4KECA 5FALA 5KJTA 3B30A 5KJWA 2II5A 4JN5A 1EABA 4JN3A 1CLAA 1XMDA 5KJUA 1XMCA 3U9BA 4CLAA 3B2SA 4G0BA 1EADA 2II3A 2ZBAA 3CLAA 1QCAA 1SCZA 1EAEA 1EAAA 2CLAA 3L60A 3U9FA 1Q9JA 1Q23A 1DPCA 2E1UA 5DUAA 2XR7A 4HVMA 1PD5A 5T3EA 3FP0A 2JGPA 3FOTA 1XL7A 1NOCB
chains in the Genus database with same CATH superfamily
2PFMA 2VSQA 4A15A 4BABA 1B8FA 2XHGA 1EACA 1EAFA 3CRVA 3UNVA 2H3UA 1JSWA 1T7NA 2H4TA 2RKTA 2IHWA 2E1VA 1DPBA 1FUQA 2RJSA 2NYFA 1T6JA 4APAA 1J3UA 3CRW1 1AUWA 5EYVA 4NLEA 1FUOA 2RJRA 1FUPA 5KJUA 3U9BA 2VD6A 4G0BA 1EADA 2O7BA 1KQ7A 2E9FA 1DPCA 3NO9A 2PTRA 3C8TA 2E1UA 3QBPA 5H8WA 2FYOA 1NDIA 2J91A 2FUSA 2JGPA 1NOCB 2FY5A 1EB4A 2YIIA 1GKJA 3OCFA 4N72A 5FANA 2BGHA 3NZ4A 2H3WA 1XL8A 4APBA 1HY1A 3KDZA 4MX2A 5F92A 5D6BA 1T1UA 2II4A 4G22A 2RCUA 2PTQA 1CIAA 4KECA 5FALA 3B30A 5KJTA 2FY4A 1T7QA 2II5A 2FW3A 1CLAA 1XMDA 4C5RA 1K7WA 1U16A 1YISA 4FFXA 2QGAB 2VSFA 1QCAA 3L60A 1Q9JA 3RD8A 1TJWA 3GZHA 4HGVA 1NDBA 1Q5NA 1PD5A 2O7FA 3FP0A 5DU9A 4V2QA 3KDYA 3TV2A 1T6PA 2NYNA 4EYWA 1L5AA 1W27A 1DPDA 5HW2A 1DOFA 2H3PA 4C5SA 2O6YA 1T7OA 2E1TA 1GK2A 4G2MA 5KJSA 2DEBA 1TJVA 5F91A 1EABA 1TJUA 1XWOA 3E04A 4JN3A 1VDKA 1DCNA 3GTDA 4ADMA 1XMCA 1YFEA 3R6YA 1NM8A 4CLAA 1GKMA 1Y2MA 3R6VA 1S5OA 2II3A 4EFCA 1EAEA 1SCZA 2FY2A 2PTSA 4CQ5A 2VL7A 1K62A 3OCEA 1Q6XA 3RRPA 3U9FA 1XL7A 2RKVA 4EEIA 1NDFA 2I9DA 1TJ7A 2O78A 3MAEA 2O7DA 4NSLA 5EYTA 1C4TA 4FLCA 4EP9A 1E2OA 3CZOA 4EPHA 5KJVA 4KE4A 1RE5A 5KJWA 4JN5A 3BHGA 1GK3A 2O7EA 2OHYA 1C3CA 2QVEA 2X75A 4BAAA 3B2SA 1C3UA 2ZBAA 3CLAA 1HY0A 3R6QA 2CLAA 1EAAA 1YFMA 1Q23A 4V2RA 4C6GA 5DUAA 1I0AA 2XR7A 4HVMA 2FY3A 5T3EA 4C5UA 2HVGA 1U15A 1FURA 3FOTA 4ADLA
chains in the Genus database with same CATH topology
2VSQA 4A15A 2XHGA 1EACA 1EAFA 3CRVA 2RKTA 2IHWA 2E1VA 1DPBA 3CRW1 4NLEA 5KJUA 3U9BA 4G0BA 1EADA 2E9FA 1DPCA 2E1UA 5H8WA 2JGPA 1NOCB 4N72A 5FANA 2BGHA 1XL8A 2II4A 4G22A 1CIAA 4KECA 5FALA 5KJTA 3B30A 2II5A 1CLAA 1XMDA 2VSFA 1QCAA 3L60A 1Q9JA 1PD5A 3FP0A 5DU9A 1L5AA 1DPDA 2E1TA 4G2MA 5KJSA 1EABA 4JN3A 1XMCA 4CLAA 2II3A 1SCZA 1EAEA 2VL7A 3U9FA 1XL7A 2RKVA 2I9DA 3MAEA 1C4TA 1E2OA 5KJVA 4KE4A 5KJWA 4JN5A 3B2SA 2ZBAA 3CLAA 2CLAA 1EAAA 1Q23A 5DUAA 2XR7A 4HVMA 5T3EA 3FOTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RKV A;  2VSQ A;  5DU9 A;  2I9D A;  3MAE A;  1L5A A;  1DPD A;  4N72 A;  2XHG A;  1EAC A;  1EAF A;  5FAN A;  2BGH A;  1C4T A;  2E1T A;  1XL8 A;  4G2M A;  2II4 A;  2RKT A;  4G22 A;  1E2O A;  5KJV A;  2IHW A;  4KE4 A;  5KJS A;  2E1V A;  1DPB A;  1CIA A;  4KEC A;  5FAL A;  5KJT A;  3B30 A;  5KJW A;  2II5 A;  4JN5 A;  1EAB A;  4JN3 A;  1CLA A;  1XMD A;  5KJU A;  1XMC A;  3U9B A;  4CLA A;  3B2S A;  4G0B A;  1EAD A;  2II3 A;  2ZBA A;  3CLA A;  1QCA A;  1SCZ A;  1EAE A;  1EAA A;  2CLA A;  3L60 A;  3U9F A;  1Q9J A;  1Q23 A;  1DPC A;  2E1U A;  5DUA A;  2XR7 A;  4HVM A;  1PD5 A;  5T3E A;  3FP0 A;  2JGP A;  3FOT A;  1XL7 A;  1NOC B; 
#chains in the Genus database with same CATH topology
 2PFM A;  2VSQ A;  4A15 A;  4BAB A;  1B8F A;  2XHG A;  1EAC A;  1EAF A;  3CRV A;  3UNV A;  2H3U A;  1JSW A;  1T7N A;  2H4T A;  2RKT A;  2IHW A;  2E1V A;  1DPB A;  1FUQ A;  2RJS A;  2NYF A;  1T6J A;  4APA A;  1J3U A;  3CRW 1;  1AUW A;  5EYV A;  4NLE A;  1FUO A;  2RJR A;  1FUP A;  5KJU A;  3U9B A;  2VD6 A;  4G0B A;  1EAD A;  2O7B A;  1KQ7 A;  2E9F A;  1DPC A;  3NO9 A;  2PTR A;  3C8T A;  2E1U A;  3QBP A;  5H8W A;  2FYO A;  1NDI A;  2J91 A;  2FUS A;  2JGP A;  1NOC B;  2FY5 A;  1EB4 A;  2YII A;  1GKJ A;  3OCF A;  4N72 A;  5FAN A;  2BGH A;  3NZ4 A;  2H3W A;  1XL8 A;  4APB A;  1HY1 A;  3KDZ A;  4MX2 A;  5F92 A;  5D6B A;  1T1U A;  2II4 A;  4G22 A;  2RCU A;  2PTQ A;  1CIA A;  4KEC A;  5FAL A;  3B30 A;  5KJT A;  2FY4 A;  1T7Q A;  2II5 A;  2FW3 A;  1CLA A;  1XMD A;  4C5R A;  1K7W A;  1U16 A;  1YIS A;  4FFX A;  2QGA B;  2VSF A;  1QCA A;  3L60 A;  1Q9J A;  3RD8 A;  1TJW A;  3GZH A;  4HGV A;  1NDB A;  1Q5N A;  1PD5 A;  2O7F A;  3FP0 A;  5DU9 A;  4V2Q A;  3KDY A;  3TV2 A;  1T6P A;  2NYN A;  4EYW A;  1L5A A;  1W27 A;  1DPD A;  5HW2 A;  1DOF A;  2H3P A;  4C5S A;  2O6Y A;  1T7O A;  2E1T A;  1GK2 A;  4G2M A;  5KJS A;  2DEB A;  1TJV A;  5F91 A;  1EAB A;  1TJU A;  1XWO A;  3E04 A;  4JN3 A;  1VDK A;  1DCN A;  3GTD A;  4ADM A;  1XMC A;  1YFE A;  3R6Y A;  1NM8 A;  4CLA A;  1GKM A;  1Y2M A;  3R6V A;  1S5O A;  2II3 A;  4EFC A;  1EAE A;  1SCZ A;  2FY2 A;  2PTS A;  4CQ5 A;  2VL7 A;  1K62 A;  3OCE A;  1Q6X A;  3RRP A;  3U9F A;  1XL7 A;  2RKV A;  4EEI A;  1NDF A;  2I9D A;  1TJ7 A;  2O78 A;  3MAE A;  2O7D A;  4NSL A;  5EYT A;  1C4T A;  4FLC A;  4EP9 A;  1E2O A;  3CZO A;  4EPH A;  5KJV A;  4KE4 A;  1RE5 A;  5KJW A;  4JN5 A;  3BHG A;  1GK3 A;  2O7E A;  2OHY A;  1C3C A;  2QVE A;  2X75 A;  4BAA A;  3B2S A;  1C3U A;  2ZBA A;  3CLA A;  1HY0 A;  3R6Q A;  2CLA A;  1EAA A;  1YFM A;  1Q23 A;  4V2R A;  4C6G A;  5DUA A;  1I0A A;  2XR7 A;  4HVM A;  2FY3 A;  5T3E A;  4C5U A;  2HVG A;  1U15 A;  1FUR A;  3FOT A;  4ADL A; 
#chains in the Genus database with same CATH homology
 2VSQ A;  4A15 A;  2XHG A;  1EAC A;  1EAF A;  3CRV A;  2RKT A;  2IHW A;  2E1V A;  1DPB A;  3CRW 1;  4NLE A;  5KJU A;  3U9B A;  4G0B A;  1EAD A;  2E9F A;  1DPC A;  2E1U A;  5H8W A;  2JGP A;  1NOC B;  4N72 A;  5FAN A;  2BGH A;  1XL8 A;  2II4 A;  4G22 A;  1CIA A;  4KEC A;  5FAL A;  5KJT A;  3B30 A;  2II5 A;  1CLA A;  1XMD A;  2VSF A;  1QCA A;  3L60 A;  1Q9J A;  1PD5 A;  3FP0 A;  5DU9 A;  1L5A A;  1DPD A;  2E1T A;  4G2M A;  5KJS A;  1EAB A;  4JN3 A;  1XMC A;  4CLA A;  2II3 A;  1SCZ A;  1EAE A;  2VL7 A;  3U9F A;  1XL7 A;  2RKV A;  2I9D A;  3MAE A;  1C4T A;  1E2O A;  5KJV A;  4KE4 A;  5KJW A;  4JN5 A;  3B2S A;  2ZBA A;  3CLA A;  2CLA A;  1EAA A;  1Q23 A;  5DUA A;  2XR7 A;  4HVM A;  5T3E A;  3FOT A; 
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