1XMCA

C323m mutant structure of mouse carnitine octanoyltransferase
Total Genus 221
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
221
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGMCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Peroxisomal carnitine O-octanoyltransferase
publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 221
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xmcA01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xmcA03
2I9DA 2BGHA 3U9BA 1Q9JA 1QCAA 1DPBA 3FP0A 1SCZA 2CLAA 4HVMA 3B30A 1Q23A 1EAFA 5KJSA 5KJUA 1XMCA 2JGPA 3CLAA 4G2MA 5KJWA 1EABA 1PD5A 2E1TA 4CLAA 5FALA 1XL7A 1CIAA 2RKTA 4N72A 3L60A 1EACA 4JN5A 5FANA 1CLAA 4G0BA 5KJTA 2RKVA 5DUAA 3U9FA 3B2SA 2II5A 1NOCB 2XHGA 4G22A 2IHWA 2E1UA 1DPCA 2II3A 2VSQA 1L5AA 1E2OA 1DPDA 2XR7A 1C4TA 2II4A 2ZBAA 4JN3A 4KE4A 5DU9A 1EAAA 5T3EA 1EADA 5KJVA 2E1VA 3FOTA 1XMDA 1EAEA 4KECA 1XL8A 3MAEA
chains in the Genus database with same CATH superfamily
2I9DA 1HY1A 1U15A 2VSFA 3FP0A 1DPBA 1JSWA 4APAA 4HVMA 1Q5NA 3B30A 3KDYA 2RJSA 1FURA 4NLEA 2PTRA 1XL7A 4EPHA 1CIAA 2X75A 2RKTA 1CLAA 3R6YA 2H3UA 2RKVA 5DUAA 4V2RA 1DOFA 1NOCB 2QVEA 1I0AA 3R6QA 3CRW1 1DPCA 2FYOA 3R6VA 1FUPA 2RCUA 1L5AA 1NDBA 2PTSA 4A15A 3CRVA 2E1VA 3FOTA 2PFMA 1XMDA 2OHYA 1NDFA 2O6YA 3RD8A 5EYVA 5F92A 3MAEA 1QCAA 3GTDA 1YFMA 4C5RA 1TJWA 4APBA 2CLAA 1YISA 2VL7A 1EB4A 1Q23A 1NDIA 5KJSA 1GK3A 5KJUA 1XMCA 3OCFA 1TJVA 4ADMA 1TJ7A 1HY0A 1XWOA 4G0BA 1T7OA 3U9FA 2O7DA 3B2SA 1GKJA 4FFXA 1NM8A 2H4TA 2XHGA 4G22A 2IHWA 3OCEA 4MX2A 4NSLA 1YFEA 2VD6A 3NO9A 2QGAB 5HW2A 2VSQA 1DPDA 4HGVA 2II4A 5T3EA 4KE4A 1GK2A 1K7WA 1EADA 1AUWA 1U16A 5EYTA 2FW3A 2YIIA 2FY4A 2O7BA 4C5SA 2NYNA 2O78A 2FUSA 2FY2A 1B8FA 1DCNA 4C6GA 1J3UA 1T6PA 1EAFA 2JGPA 3CLAA 3CZOA 1T1UA 1EABA 2H3PA 2E1TA 4CLAA 1T6JA 2J91A 1EACA 2O7EA 2HVGA 4CQ5A 1Q6XA 3E04A 1C3UA 4EEIA 1K62A 1FUQA 2II3A 2XR7A 4FLCA 4EP9A 1GKMA 5DU9A 1RE5A 4ADLA 5KJVA 1C3CA 1S5OA 1EAEA 4C5UA 3U9BA 2BGHA 1Q9JA 2H3WA 4EFCA 1SCZA 5H8WA 1KQ7A 1VDKA 2NYFA 1T7QA 3UNVA 4G2MA 1PD5A 5KJWA 5FALA 4V2QA 3KDZA 1Y2MA 1W27A 2RJRA 5F91A 3L60A 4JN5A 4N72A 5FANA 5D6BA 4EYWA 4BABA 5KJTA 3QBPA 3TV2A 3GZHA 3BHGA 2E9FA 2II5A 1T7NA 2DEBA 2E1UA 3C8TA 1E2OA 2ZBAA 1C4TA 4JN3A 1FUOA 1EAAA 2PTQA 2O7FA 3NZ4A 4BAAA 2FY3A 4KECA 2FY5A 1XL8A 1TJUA 3RRPA
chains in the Genus database with same CATH topology
2I9DA 2VSFA 3FP0A 1DPBA 4HVMA 3B30A 4NLEA 1XL7A 1CIAA 2RKTA 1CLAA 2RKVA 5DUAA 1NOCB 1DPCA 3CRW1 1L5AA 4A15A 3CRVA 2E1VA 3FOTA 1XMDA 1QCAA 2CLAA 2VL7A 1Q23A 5KJSA 5KJUA 1XMCA 4G0BA 3U9FA 3B2SA 2XHGA 4G22A 2IHWA 2VSQA 1DPDA 5T3EA 2II4A 4KE4A 1EADA 1EAFA 2JGPA 3CLAA 1EABA 2E1TA 4CLAA 1EACA 2II3A 2XR7A 5DU9A 5KJVA 1EAEA 3U9BA 2BGHA 1Q9JA 1SCZA 5H8WA 4G2MA 5KJWA 1PD5A 5FALA 4N72A 3L60A 4JN5A 5FANA 5KJTA 2II5A 2E9FA 2E1UA 1E2OA 2ZBAA 1C4TA 4JN3A 1EAAA 4KECA 1XL8A 3MAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I9D A;  2BGH A;  3U9B A;  1Q9J A;  1QCA A;  1DPB A;  3FP0 A;  1SCZ A;  2CLA A;  4HVM A;  3B30 A;  1Q23 A;  1EAF A;  5KJS A;  5KJU A;  1XMC A;  2JGP A;  3CLA A;  4G2M A;  5KJW A;  1EAB A;  1PD5 A;  2E1T A;  4CLA A;  5FAL A;  1XL7 A;  1CIA A;  2RKT A;  4N72 A;  3L60 A;  1EAC A;  4JN5 A;  5FAN A;  1CLA A;  4G0B A;  5KJT A;  2RKV A;  5DUA A;  3U9F A;  3B2S A;  2II5 A;  1NOC B;  2XHG A;  4G22 A;  2IHW A;  2E1U A;  1DPC A;  2II3 A;  2VSQ A;  1L5A A;  1E2O A;  1DPD A;  2XR7 A;  1C4T A;  2II4 A;  2ZBA A;  4JN3 A;  4KE4 A;  5DU9 A;  1EAA A;  5T3E A;  1EAD A;  5KJV A;  2E1V A;  3FOT A;  1XMD A;  1EAE A;  4KEC A;  1XL8 A;  3MAE A; 
#chains in the Genus database with same CATH topology
 2I9D A;  1HY1 A;  1U15 A;  2VSF A;  3FP0 A;  1DPB A;  1JSW A;  4APA A;  4HVM A;  1Q5N A;  3B30 A;  3KDY A;  2RJS A;  1FUR A;  4NLE A;  2PTR A;  1XL7 A;  4EPH A;  1CIA A;  2X75 A;  2RKT A;  1CLA A;  3R6Y A;  2H3U A;  2RKV A;  5DUA A;  4V2R A;  1DOF A;  1NOC B;  2QVE A;  1I0A A;  3R6Q A;  3CRW 1;  1DPC A;  2FYO A;  3R6V A;  1FUP A;  2RCU A;  1L5A A;  1NDB A;  2PTS A;  4A15 A;  3CRV A;  2E1V A;  3FOT A;  2PFM A;  1XMD A;  2OHY A;  1NDF A;  2O6Y A;  3RD8 A;  5EYV A;  5F92 A;  3MAE A;  1QCA A;  3GTD A;  1YFM A;  4C5R A;  1TJW A;  4APB A;  2CLA A;  1YIS A;  2VL7 A;  1EB4 A;  1Q23 A;  1NDI A;  5KJS A;  1GK3 A;  5KJU A;  1XMC A;  3OCF A;  1TJV A;  4ADM A;  1TJ7 A;  1HY0 A;  1XWO A;  4G0B A;  1T7O A;  3U9F A;  2O7D A;  3B2S A;  1GKJ A;  4FFX A;  1NM8 A;  2H4T A;  2XHG A;  4G22 A;  2IHW A;  3OCE A;  4MX2 A;  4NSL A;  1YFE A;  2VD6 A;  3NO9 A;  2QGA B;  5HW2 A;  2VSQ A;  1DPD A;  4HGV A;  2II4 A;  5T3E A;  4KE4 A;  1GK2 A;  1K7W A;  1EAD A;  1AUW A;  1U16 A;  5EYT A;  2FW3 A;  2YII A;  2FY4 A;  2O7B A;  4C5S A;  2NYN A;  2O78 A;  2FUS A;  2FY2 A;  1B8F A;  1DCN A;  4C6G A;  1J3U A;  1T6P A;  1EAF A;  2JGP A;  3CLA A;  3CZO A;  1T1U A;  1EAB A;  2H3P A;  2E1T A;  4CLA A;  1T6J A;  2J91 A;  1EAC A;  2O7E A;  2HVG A;  4CQ5 A;  1Q6X A;  3E04 A;  1C3U A;  4EEI A;  1K62 A;  1FUQ A;  2II3 A;  2XR7 A;  4FLC A;  4EP9 A;  1GKM A;  5DU9 A;  1RE5 A;  4ADL A;  5KJV A;  1C3C A;  1S5O A;  1EAE A;  4C5U A;  3U9B A;  2BGH A;  1Q9J A;  2H3W A;  4EFC A;  1SCZ A;  5H8W A;  1KQ7 A;  1VDK A;  2NYF A;  1T7Q A;  3UNV A;  4G2M A;  1PD5 A;  5KJW A;  5FAL A;  4V2Q A;  3KDZ A;  1Y2M A;  1W27 A;  2RJR A;  5F91 A;  3L60 A;  4JN5 A;  4N72 A;  5FAN A;  5D6B A;  4EYW A;  4BAB A;  5KJT A;  3QBP A;  3TV2 A;  3GZH A;  3BHG A;  2E9F A;  2II5 A;  1T7N A;  2DEB A;  2E1U A;  3C8T A;  1E2O A;  2ZBA A;  1C4T A;  4JN3 A;  1FUO A;  1EAA A;  2PTQ A;  2O7F A;  3NZ4 A;  4BAA A;  2FY3 A;  4KEC A;  2FY5 A;  1XL8 A;  1TJU A;  3RRP A; 
#chains in the Genus database with same CATH homology
 2I9D A;  2VSF A;  3FP0 A;  1DPB A;  4HVM A;  3B30 A;  4NLE A;  1XL7 A;  1CIA A;  2RKT A;  1CLA A;  2RKV A;  5DUA A;  1NOC B;  1DPC A;  3CRW 1;  1L5A A;  4A15 A;  3CRV A;  2E1V A;  3FOT A;  1XMD A;  1QCA A;  2CLA A;  2VL7 A;  1Q23 A;  5KJS A;  5KJU A;  1XMC A;  4G0B A;  3U9F A;  3B2S A;  2XHG A;  4G22 A;  2IHW A;  2VSQ A;  1DPD A;  5T3E A;  2II4 A;  4KE4 A;  1EAD A;  1EAF A;  2JGP A;  3CLA A;  1EAB A;  2E1T A;  4CLA A;  1EAC A;  2II3 A;  2XR7 A;  5DU9 A;  5KJV A;  1EAE A;  3U9B A;  2BGH A;  1Q9J A;  1SCZ A;  5H8W A;  4G2M A;  5KJW A;  1PD5 A;  5FAL A;  4N72 A;  3L60 A;  4JN5 A;  5FAN A;  5KJT A;  2II5 A;  2E9F A;  2E1U A;  1E2O A;  2ZBA A;  1C4T A;  4JN3 A;  1EAA A;  4KEC A;  1XL8 A;  3MAE A; 
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