1XMCA

C323m mutant structure of mouse carnitine octanoyltransferase
Total Genus 221
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
221
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGMCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
molecule keywords Peroxisomal carnitine O-octanoyltransferase
total genus 221
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xmcA01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xmcA03
3U9BA 1SCZA 3U9FA 1E2OA 5KJUA 1DPDA 1Q9JA 3FP0A 2XHGA 5T3EA 1EABA 5DU9A 2RKTA 2JGPA 1Q23A 2CLAA 2BGHA 4JN3A 2E1VA 1DPBA 1EADA 2II5A 5DUAA 5KJVA 5KJSA 4KECA 1EACA 5FALA 1XMCA 4G22A 2II4A 1XMDA 1C4TA 1NOCB 4G0BA 1EAAA 4KE4A 5KJWA 1L5AA 1CLAA 2I9DA 3B2SA 1EAFA 1QCAA 5KJTA 4N72A 2IHWA 4G2MA 4JN5A 5FANA 1PD5A 2II3A 2ZBAA 3MAEA 1XL7A 3B30A 3L60A 1CIAA 3FOTA 4HVMA 2VSQA 1EAEA 2E1UA 3CLAA 2XR7A 1DPCA 2E1TA 1XL8A 4CLAA 2RKVA
chains in the Genus database with same CATH superfamily
3R6YA 1RE5A 1T1UA 1DPDA 1Q9JA 4APAA 1T7NA 2O7FA 4NSLA 5DU9A 2HVGA 2QGAB 2JGPA 4JN3A 2FY2A 3C8TA 3QBPA 2RJSA 3BHGA 1B8FA 4V2QA 3RD8A 4KECA 1W27A 1XMCA 5F91A 4BAAA 2II4A 2O7BA 5KJWA 1YFEA 2J91A 1CLAA 3B2SA 1AUWA 1EB4A 4EYWA 1NDBA 4JN5A 1K62A 2E9FA 3RRPA 5EYTA 2X75A 4MX2A 3FOTA 1EAEA 4ADMA 1C3UA 2PFMA 1HY0A 3TV2A 2DEBA 2VL7A 3R6QA 2RKVA 3U9BA 2PTSA 4C5SA 3U9FA 1C3CA 1E2OA 5KJUA 3NZ4A 4A15A 4V2RA 3GTDA 1Q23A 2CLAA 4BABA 3UNVA 5EYVA 2NYFA 3CRVA 2E1VA 1EADA 5KJVA 5DUAA 1HY1A 5F92A 1FUOA 5FALA 4G0BA 3OCEA 1NOCB 1EAAA 2FYOA 2QVEA 2FY5A 4C6GA 4N72A 1TJWA 1T7OA 2IHWA 5FANA 1GKMA 4HGVA 4NLEA 2FUSA 3B30A 5HW2A 2O7DA 4FLCA 4ADLA 1Q6XA 2E1UA 1DPCA 2E1TA 4APBA 1XWOA 1FUQA 3E04A 1SCZA 1TJ7A 1GK3A 3FP0A 1J3UA 2PTQA 1NDIA 1YISA 1TJUA 2H3PA 1DCNA 1DOFA 1DPBA 5KJSA 3OCFA 1EACA 4C5UA 1T6JA 1Q5NA 3CRW1 4C5RA 4KE4A 1I0AA 2O78A 2I9DA 3KDZA 5D6BA 1EAFA 1QCAA 5KJTA 4FFXA 4EFCA 2RJRA 1GK2A 2ZBAA 3MAEA 3L60A 1FUPA 1CIAA 3GZHA 4EPHA 1TJVA 1T6PA 1GKJA 4CLAA 3CZOA 2H4TA 3NO9A 1K7WA 1JSWA 1NM8A 1Y2MA 4CQ5A 1EABA 2VSFA 2XHGA 5T3EA 2RKTA 2O6YA 2BGHA 1S5OA 2II5A 1YFMA 2PTRA 2H3UA 4G22A 2H3WA 4EEIA 1XMDA 3KDYA 1C4TA 2VD6A 1VDKA 1L5AA 3R6VA 2FY3A 4EP9A 1T7QA 2RCUA 4G2MA 2OHYA 1NDFA 1PD5A 2FY4A 2II3A 1KQ7A 1XL7A 2YIIA 2FW3A 5H8WA 1U16A 1FURA 4HVMA 2VSQA 3CLAA 2XR7A 2O7EA 1XL8A 2NYNA 1U15A
chains in the Genus database with same CATH topology
2VL7A 3U9BA 1SCZA 3U9FA 1E2OA 5KJUA 1DPDA 1Q9JA 3FP0A 2XHGA 5T3EA 4A15A 1EABA 2VSFA 5DU9A 2RKTA 2JGPA 1Q23A 2CLAA 2BGHA 4JN3A 2E1VA 3CRVA 1DPBA 1EADA 2II5A 5DUAA 5KJVA 5KJSA 4KECA 1EACA 5FALA 1XMCA 4G22A 2II4A 3CRW1 1C4TA 1XMDA 1NOCB 1EAAA 4G0BA 4KE4A 5KJWA 1L5AA 1CLAA 2I9DA 3B2SA 1EAFA 1QCAA 5KJTA 4N72A 2IHWA 4G2MA 4JN5A 5FANA 1PD5A 2II3A 2E9FA 4NLEA 2ZBAA 3MAEA 1XL7A 3B30A 3L60A 5H8WA 1CIAA 3FOTA 4HVMA 2VSQA 1EAEA 2E1UA 3CLAA 2XR7A 1DPCA 2E1TA 1XL8A 4CLAA 2RKVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U9B A;  1SCZ A;  3U9F A;  1E2O A;  5KJU A;  1DPD A;  1Q9J A;  3FP0 A;  2XHG A;  5T3E A;  1EAB A;  5DU9 A;  2RKT A;  2JGP A;  1Q23 A;  2CLA A;  2BGH A;  4JN3 A;  2E1V A;  1DPB A;  1EAD A;  2II5 A;  5DUA A;  5KJV A;  5KJS A;  4KEC A;  1EAC A;  5FAL A;  1XMC A;  4G22 A;  2II4 A;  1XMD A;  1C4T A;  1NOC B;  4G0B A;  1EAA A;  4KE4 A;  5KJW A;  1L5A A;  1CLA A;  2I9D A;  3B2S A;  1EAF A;  1QCA A;  5KJT A;  4N72 A;  2IHW A;  4G2M A;  4JN5 A;  5FAN A;  1PD5 A;  2II3 A;  2ZBA A;  3MAE A;  1XL7 A;  3B30 A;  3L60 A;  1CIA A;  3FOT A;  4HVM A;  2VSQ A;  1EAE A;  2E1U A;  3CLA A;  2XR7 A;  1DPC A;  2E1T A;  1XL8 A;  4CLA A;  2RKV A; 
#chains in the Genus database with same CATH topology
 3R6Y A;  1RE5 A;  1T1U A;  1DPD A;  1Q9J A;  4APA A;  1T7N A;  2O7F A;  4NSL A;  5DU9 A;  2HVG A;  2QGA B;  2JGP A;  4JN3 A;  2FY2 A;  3C8T A;  3QBP A;  2RJS A;  3BHG A;  1B8F A;  4V2Q A;  3RD8 A;  4KEC A;  1W27 A;  1XMC A;  5F91 A;  4BAA A;  2II4 A;  2O7B A;  5KJW A;  1YFE A;  2J91 A;  1CLA A;  3B2S A;  1AUW A;  1EB4 A;  4EYW A;  1NDB A;  4JN5 A;  1K62 A;  2E9F A;  3RRP A;  5EYT A;  2X75 A;  4MX2 A;  3FOT A;  1EAE A;  4ADM A;  1C3U A;  2PFM A;  1HY0 A;  3TV2 A;  2DEB A;  2VL7 A;  3R6Q A;  2RKV A;  3U9B A;  2PTS A;  4C5S A;  3U9F A;  1C3C A;  1E2O A;  5KJU A;  3NZ4 A;  4A15 A;  4V2R A;  3GTD A;  1Q23 A;  2CLA A;  4BAB A;  3UNV A;  5EYV A;  2NYF A;  3CRV A;  2E1V A;  1EAD A;  5KJV A;  5DUA A;  1HY1 A;  5F92 A;  1FUO A;  5FAL A;  4G0B A;  3OCE A;  1NOC B;  1EAA A;  2FYO A;  2QVE A;  2FY5 A;  4C6G A;  4N72 A;  1TJW A;  1T7O A;  2IHW A;  5FAN A;  1GKM A;  4HGV A;  4NLE A;  2FUS A;  3B30 A;  5HW2 A;  2O7D A;  4FLC A;  4ADL A;  1Q6X A;  2E1U A;  1DPC A;  2E1T A;  4APB A;  1XWO A;  1FUQ A;  3E04 A;  1SCZ A;  1TJ7 A;  1GK3 A;  3FP0 A;  1J3U A;  2PTQ A;  1NDI A;  1YIS A;  1TJU A;  2H3P A;  1DCN A;  1DOF A;  1DPB A;  5KJS A;  3OCF A;  1EAC A;  4C5U A;  1T6J A;  1Q5N A;  3CRW 1;  4C5R A;  4KE4 A;  1I0A A;  2O78 A;  2I9D A;  3KDZ A;  5D6B A;  1EAF A;  1QCA A;  5KJT A;  4FFX A;  4EFC A;  2RJR A;  1GK2 A;  2ZBA A;  3MAE A;  3L60 A;  1FUP A;  1CIA A;  3GZH A;  4EPH A;  1TJV A;  1T6P A;  1GKJ A;  4CLA A;  3CZO A;  2H4T A;  3NO9 A;  1K7W A;  1JSW A;  1NM8 A;  1Y2M A;  4CQ5 A;  1EAB A;  2VSF A;  2XHG A;  5T3E A;  2RKT A;  2O6Y A;  2BGH A;  1S5O A;  2II5 A;  1YFM A;  2PTR A;  2H3U A;  4G22 A;  2H3W A;  4EEI A;  1XMD A;  3KDY A;  1C4T A;  2VD6 A;  1VDK A;  1L5A A;  3R6V A;  2FY3 A;  4EP9 A;  1T7Q A;  2RCU A;  4G2M A;  2OHY A;  1NDF A;  1PD5 A;  2FY4 A;  2II3 A;  1KQ7 A;  1XL7 A;  2YII A;  2FW3 A;  5H8W A;  1U16 A;  1FUR A;  4HVM A;  2VSQ A;  3CLA A;  2XR7 A;  2O7E A;  1XL8 A;  2NYN A;  1U15 A; 
#chains in the Genus database with same CATH homology
 2VL7 A;  3U9B A;  1SCZ A;  3U9F A;  1E2O A;  5KJU A;  1DPD A;  1Q9J A;  3FP0 A;  2XHG A;  5T3E A;  4A15 A;  1EAB A;  2VSF A;  5DU9 A;  2RKT A;  2JGP A;  1Q23 A;  2CLA A;  2BGH A;  4JN3 A;  2E1V A;  3CRV A;  1DPB A;  1EAD A;  2II5 A;  5DUA A;  5KJV A;  5KJS A;  4KEC A;  1EAC A;  5FAL A;  1XMC A;  4G22 A;  2II4 A;  3CRW 1;  1C4T A;  1XMD A;  1NOC B;  1EAA A;  4G0B A;  4KE4 A;  5KJW A;  1L5A A;  1CLA A;  2I9D A;  3B2S A;  1EAF A;  1QCA A;  5KJT A;  4N72 A;  2IHW A;  4G2M A;  4JN5 A;  5FAN A;  1PD5 A;  2II3 A;  2E9F A;  4NLE A;  2ZBA A;  3MAE A;  1XL7 A;  3B30 A;  3L60 A;  5H8W A;  1CIA A;  3FOT A;  4HVM A;  2VSQ A;  1EAE A;  2E1U A;  3CLA A;  2XR7 A;  1DPC A;  2E1T A;  1XL8 A;  4CLA A;  2RKV A; 
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