1XMCA

C323m mutant structure of mouse carnitine octanoyltransferase
Total Genus 221
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
221
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGMCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Peroxisomal carnitine O-octanoyltransferase
publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 221
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xmcA01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xmcA03
1DPBA 2BGHA 2CLAA 2ZBAA 5T3EA 2II5A 2E1VA 1C4TA 3CLAA 3FOTA 4JN3A 1QCAA 2RKTA 1L5AA 1EABA 5FANA 5KJWA 1XMDA 1E2OA 5KJVA 2XHGA 5KJUA 1EACA 4KE4A 5DUAA 3MAEA 5KJSA 1PD5A 1EADA 2I9DA 1EAEA 1DPDA 2II4A 1Q9JA 3B2SA 2VSQA 4JN5A 3U9BA 4CLAA 5FALA 4HVMA 4G22A 1CIAA 1XMCA 1EAFA 1XL7A 2RKVA 1EAAA 4G0BA 1SCZA 1NOCB 1CLAA 2XR7A 3L60A 4N72A 1XL8A 2IHWA 1DPCA 2E1TA 2JGPA 3U9FA 2E1UA 4KECA 5DU9A 5KJTA 1Q23A 3B30A 2II3A 4G2MA 3FP0A
chains in the Genus database with same CATH superfamily
1NDIA 2BGHA 1VDKA 2RJRA 2J91A 4FFXA 2II5A 4NLEA 1Q5NA 1FUPA 3CLAA 2HVGA 2E9FA 2FYOA 1L5AA 1FURA 4ADMA 4EPHA 3GZHA 5FANA 1S5OA 4EP9A 2O6YA 4HGVA 4BAAA 5DUAA 4KE4A 2FY3A 1DOFA 4C5UA 2H3WA 1Q6XA 2I9DA 1B8FA 1YFMA 5FALA 4V2RA 3NZ4A 3R6YA 5HW2A 1YFEA 1T6JA 3L60A 1T7OA 4CQ5A 2VL7A 4APBA 1T6PA 1TJWA 4APAA 4EEIA 3UNVA 1AUWA 1DPCA 1T7NA 1FUOA 5KJTA 1C3UA 3FP0A 1DCNA 2PTSA 1J3UA 2RJSA 1QCAA 2H3UA 2RKTA 1C3CA 2OHYA 1XWOA 1EABA 3C8TA 4V2QA 5EYVA 5KJWA 1U16A 1XMDA 1HY0A 3OCFA 1T1UA 2QGAB 1K7WA 1DPDA 4CLAA 3CZOA 2PTQA 4G22A 3RD8A 1CIAA 1RE5A 1XL7A 1FUQA 1EAAA 1TJUA 1SCZA 3CRW1 4EFCA 3GTDA 2VSFA 3CRVA 1HY1A 1GKJA 2O7DA 2O7BA 2PTRA 3U9FA 4KECA 5DU9A 1GK2A 1GK3A 5D6BA 3B30A 2DEBA 1GKMA 1C4TA 3R6QA 1JSWA 1EB4A 2O7FA 5KJUA 4NSLA 1EACA 3MAEA 1U15A 1YISA 1PD5A 2II4A 4FLCA 4MX2A 2VSQA 4EYWA 4C5RA 1TJVA 2H3PA 1TJ7A 4A15A 1T7QA 1XMCA 1EAFA 5H8WA 2YIIA 2RKVA 2FY4A 4G0BA 3RRPA 1NOCB 1NM8A 1KQ7A 1XL8A 2PFMA 3BHGA 2QVEA 1NDFA 4BABA 3KDYA 2E1UA 3NO9A 5EYTA 2O78A 3TV2A 3KDZA 2X75A 2FUSA 1DPBA 2CLAA 2ZBAA 5T3EA 2VD6A 4ADLA 2E1VA 3FOTA 4JN3A 2NYNA 3R6VA 2FW3A 1Y2MA 2NYFA 1E2OA 5KJVA 2FY2A 1W27A 5F92A 2XHGA 3QBPA 5KJSA 1EADA 3B2SA 1EAEA 3U9BA 2H4TA 1Q9JA 4JN5A 3E04A 4HVMA 1NDBA 2O7EA 5F91A 1K62A 3OCEA 4C5SA 2RCUA 1CLAA 2XR7A 4N72A 2IHWA 2JGPA 2E1TA 4C6GA 1I0AA 1Q23A 2FY5A 2II3A 4G2MA
chains in the Genus database with same CATH topology
2BGHA 2II5A 4NLEA 3CLAA 2E9FA 1L5AA 5FANA 5DUAA 4KE4A 2I9DA 5FALA 3L60A 2VL7A 1DPCA 5KJTA 3FP0A 1QCAA 2RKTA 1EABA 5KJWA 1XMDA 4CLAA 1DPDA 4G22A 1CIAA 1XL7A 1EAAA 1SCZA 3CRW1 2VSFA 3CRVA 3U9FA 4KECA 5DU9A 3B30A 1C4TA 5KJUA 1EACA 3MAEA 1PD5A 2II4A 2VSQA 4A15A 1XMCA 1EAFA 5H8WA 2RKVA 4G0BA 1NOCB 1XL8A 2E1UA 1DPBA 2CLAA 2ZBAA 5T3EA 2E1VA 3FOTA 4JN3A 1E2OA 5KJVA 2XHGA 5KJSA 1EADA 3B2SA 1EAEA 3U9BA 1Q9JA 4JN5A 4HVMA 1CLAA 2XR7A 4N72A 2IHWA 2JGPA 2E1TA 1Q23A 2II3A 4G2MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DPB A;  2BGH A;  2CLA A;  2ZBA A;  5T3E A;  2II5 A;  2E1V A;  1C4T A;  3CLA A;  3FOT A;  4JN3 A;  1QCA A;  2RKT A;  1L5A A;  1EAB A;  5FAN A;  5KJW A;  1XMD A;  1E2O A;  5KJV A;  2XHG A;  5KJU A;  1EAC A;  4KE4 A;  5DUA A;  3MAE A;  5KJS A;  1PD5 A;  1EAD A;  2I9D A;  1EAE A;  1DPD A;  2II4 A;  1Q9J A;  3B2S A;  2VSQ A;  4JN5 A;  3U9B A;  4CLA A;  5FAL A;  4HVM A;  4G22 A;  1CIA A;  1XMC A;  1EAF A;  1XL7 A;  2RKV A;  1EAA A;  4G0B A;  1SCZ A;  1NOC B;  1CLA A;  2XR7 A;  3L60 A;  4N72 A;  1XL8 A;  2IHW A;  1DPC A;  2E1T A;  2JGP A;  3U9F A;  2E1U A;  4KEC A;  5DU9 A;  5KJT A;  1Q23 A;  3B30 A;  2II3 A;  4G2M A;  3FP0 A; 
#chains in the Genus database with same CATH topology
 1NDI A;  2BGH A;  1VDK A;  2RJR A;  2J91 A;  4FFX A;  2II5 A;  4NLE A;  1Q5N A;  1FUP A;  3CLA A;  2HVG A;  2E9F A;  2FYO A;  1L5A A;  1FUR A;  4ADM A;  4EPH A;  3GZH A;  5FAN A;  1S5O A;  4EP9 A;  2O6Y A;  4HGV A;  4BAA A;  5DUA A;  4KE4 A;  2FY3 A;  1DOF A;  4C5U A;  2H3W A;  1Q6X A;  2I9D A;  1B8F A;  1YFM A;  5FAL A;  4V2R A;  3NZ4 A;  3R6Y A;  5HW2 A;  1YFE A;  1T6J A;  3L60 A;  1T7O A;  4CQ5 A;  2VL7 A;  4APB A;  1T6P A;  1TJW A;  4APA A;  4EEI A;  3UNV A;  1AUW A;  1DPC A;  1T7N A;  1FUO A;  5KJT A;  1C3U A;  3FP0 A;  1DCN A;  2PTS A;  1J3U A;  2RJS A;  1QCA A;  2H3U A;  2RKT A;  1C3C A;  2OHY A;  1XWO A;  1EAB A;  3C8T A;  4V2Q A;  5EYV A;  5KJW A;  1U16 A;  1XMD A;  1HY0 A;  3OCF A;  1T1U A;  2QGA B;  1K7W A;  1DPD A;  4CLA A;  3CZO A;  2PTQ A;  4G22 A;  3RD8 A;  1CIA A;  1RE5 A;  1XL7 A;  1FUQ A;  1EAA A;  1TJU A;  1SCZ A;  3CRW 1;  4EFC A;  3GTD A;  2VSF A;  3CRV A;  1HY1 A;  1GKJ A;  2O7D A;  2O7B A;  2PTR A;  3U9F A;  4KEC A;  5DU9 A;  1GK2 A;  1GK3 A;  5D6B A;  3B30 A;  2DEB A;  1GKM A;  1C4T A;  3R6Q A;  1JSW A;  1EB4 A;  2O7F A;  5KJU A;  4NSL A;  1EAC A;  3MAE A;  1U15 A;  1YIS A;  1PD5 A;  2II4 A;  4FLC A;  4MX2 A;  2VSQ A;  4EYW A;  4C5R A;  1TJV A;  2H3P A;  1TJ7 A;  4A15 A;  1T7Q A;  1XMC A;  1EAF A;  5H8W A;  2YII A;  2RKV A;  2FY4 A;  4G0B A;  3RRP A;  1NOC B;  1NM8 A;  1KQ7 A;  1XL8 A;  2PFM A;  3BHG A;  2QVE A;  1NDF A;  4BAB A;  3KDY A;  2E1U A;  3NO9 A;  5EYT A;  2O78 A;  3TV2 A;  3KDZ A;  2X75 A;  2FUS A;  1DPB A;  2CLA A;  2ZBA A;  5T3E A;  2VD6 A;  4ADL A;  2E1V A;  3FOT A;  4JN3 A;  2NYN A;  3R6V A;  2FW3 A;  1Y2M A;  2NYF A;  1E2O A;  5KJV A;  2FY2 A;  1W27 A;  5F92 A;  2XHG A;  3QBP A;  5KJS A;  1EAD A;  3B2S A;  1EAE A;  3U9B A;  2H4T A;  1Q9J A;  4JN5 A;  3E04 A;  4HVM A;  1NDB A;  2O7E A;  5F91 A;  1K62 A;  3OCE A;  4C5S A;  2RCU A;  1CLA A;  2XR7 A;  4N72 A;  2IHW A;  2JGP A;  2E1T A;  4C6G A;  1I0A A;  1Q23 A;  2FY5 A;  2II3 A;  4G2M A; 
#chains in the Genus database with same CATH homology
 2BGH A;  2II5 A;  4NLE A;  3CLA A;  2E9F A;  1L5A A;  5FAN A;  5DUA A;  4KE4 A;  2I9D A;  5FAL A;  3L60 A;  2VL7 A;  1DPC A;  5KJT A;  3FP0 A;  1QCA A;  2RKT A;  1EAB A;  5KJW A;  1XMD A;  4CLA A;  1DPD A;  4G22 A;  1CIA A;  1XL7 A;  1EAA A;  1SCZ A;  3CRW 1;  2VSF A;  3CRV A;  3U9F A;  4KEC A;  5DU9 A;  3B30 A;  1C4T A;  5KJU A;  1EAC A;  3MAE A;  1PD5 A;  2II4 A;  2VSQ A;  4A15 A;  1XMC A;  1EAF A;  5H8W A;  2RKV A;  4G0B A;  1NOC B;  1XL8 A;  2E1U A;  1DPB A;  2CLA A;  2ZBA A;  5T3E A;  2E1V A;  3FOT A;  4JN3 A;  1E2O A;  5KJV A;  2XHG A;  5KJS A;  1EAD A;  3B2S A;  1EAE A;  3U9B A;  1Q9J A;  4JN5 A;  4HVM A;  1CLA A;  2XR7 A;  4N72 A;  2IHW A;  2JGP A;  2E1T A;  1Q23 A;  2II3 A;  4G2M A; 
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