1XMCA

C323m mutant structure of mouse carnitine octanoyltransferase
Total Genus 221
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
221
sequence length
602
structure length
591
Chain Sequence
ERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVFDVLHEGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDKSYNLISFANGIFGMCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVRDIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTLHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLEAFAKHNKMMKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of mouse carnitine octanoyltransferase and molecular determinants of substrate selectivity.
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
molecule keywords Peroxisomal carnitine O-octanoyltransferase
total genus 221
structure length 591
sequence length 602
chains with identical sequence B
ec nomenclature ec 2.3.1.137: Carnitine O-octanoyltransferase.
pdb deposition date 2004-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.20 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase C; Chain B, domain 1 1xmcA01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1xmcA03
1Q9JA 1XL8A 1EAAA 1EABA 4HVMA 1XMCA 3FP0A 4G0BA 2XR7A 4CLAA 1C4TA 1DPDA 2I9DA 2E1TA 2JGPA 3U9FA 2RKVA 3B30A 2VSQA 2IHWA 5KJTA 5KJVA 4G22A 1DPBA 1SCZA 2E1UA 4KE4A 4N72A 2II5A 2CLAA 2RKTA 3FOTA 1EACA 1DPCA 1QCAA 1EADA 1EAFA 1PD5A 5FANA 1CIAA 1EAEA 5DU9A 3B2SA 2II4A 3MAEA 2E1VA 4JN3A 1L5AA 2BGHA 4G2MA 1E2OA 2II3A 1NOCB 1XL7A 5T3EA 1Q23A 3L60A 4KECA 1XMDA 2XHGA 3U9BA 5FALA 5KJWA 5KJUA 3CLAA 5KJSA 5DUAA 4JN5A 1CLAA 2ZBAA
chains in the Genus database with same CATH superfamily
1T6PA 2RCUA 2FY3A 3FP0A 4G0BA 2OHYA 2VSFA 2XR7A 3CZOA 2O7BA 1XWOA 1DPDA 3TV2A 4HGVA 2RKVA 3B30A 2IHWA 3OCEA 1W27A 2NYFA 1DPBA 1SCZA 2E1UA 4APBA 2II5A 3NZ4A 1NDFA 4APAA 3NO9A 1QCAA 1DCNA 1U15A 5FANA 3RD8A 1CIAA 2FY5A 2II4A 2RJRA 4BAAA 3MAEA 1YISA 1L5AA 2RJSA 2BGHA 1E2OA 2II3A 3CRW1 1NOCB 2VD6A 3E04A 2O7DA 1HY0A 3L60A 1K62A 2XHGA 3U9BA 1Y2MA 1FURA 5F92A 4C5UA 1Q9JA 1XL8A 1GK3A 2VL7A 1TJVA 1EAAA 1GK2A 4ADLA 1EABA 2DEBA 1XMCA 2O78A 2PTRA 1NM8A 2HVGA 4CLAA 2FY4A 1C3UA 2I9DA 4V2RA 2QVEA 1T1UA 2FY2A 5KJVA 1RE5A 2H3UA 4KE4A 4N72A 5KJTA 2PTSA 4FLCA 3FOTA 5D6BA 1EACA 2FUSA 1DPCA 4C5SA 4MX2A 1EADA 1HY1A 2FW3A 5DU9A 3R6YA 1T7NA 5F91A 4JN3A 4G2MA 1JSWA 1FUOA 2O7EA 3BHGA 1NDBA 2YIIA 4EFCA 5EYVA 5DUAA 1K7WA 2H4TA 1T6JA 3C8TA 4JN5A 3R6VA 4EP9A 4HVMA 4NLEA 4EEIA 2H3PA 4A15A 1C4TA 2JGPA 1T7QA 2VSQA 1AUWA 2O7FA 1I0AA 2O6YA 2J91A 2H3WA 1FUQA 5EYTA 1EAFA 1PD5A 2E9FA 1KQ7A 3GTDA 3RRPA 1EAEA 1S5OA 3B2SA 1C3CA 1Q5NA 2E1VA 3R6QA 3GZHA 1XL7A 3KDZA 4BABA 5T3EA 3CRVA 4KECA 4C5RA 5FALA 5KJUA 3CLAA 2QGAB 1TJUA 4C6GA 2ZBAA 2FYOA 1FUPA 2PTQA 1GKMA 1B8FA 1NDIA 1YFEA 5HW2A 2E1TA 4EYWA 3U9FA 3QBPA 3KDYA 2X75A 4G22A 1TJWA 4CQ5A 2PFMA 2CLAA 1YFMA 1TJ7A 2RKTA 4EPHA 3UNVA 2NYNA 1EB4A 1T7OA 4FFXA 4V2QA 1DOFA 4NSLA 1GKJA 1VDKA 1Q23A 1U16A 1XMDA 5KJSA 5KJWA 5H8WA 4ADMA 1Q6XA 3OCFA 1CLAA 1J3UA
chains in the Genus database with same CATH topology
1Q9JA 1XL8A 2VL7A 1EAAA 1EABA 4HVMA 4NLEA 1XMCA 3FP0A 4G0BA 2XR7A 2VSFA 4CLAA 1C4TA 4A15A 1DPDA 2E1TA 2I9DA 2JGPA 3U9FA 2RKVA 3B30A 2VSQA 2IHWA 5KJTA 5KJVA 4G22A 1DPBA 1SCZA 2E1UA 4KE4A 4N72A 2II5A 2CLAA 2RKTA 3FOTA 1EACA 1DPCA 1QCAA 1EADA 1EAFA 1PD5A 5FANA 2E9FA 1CIAA 1EAEA 5DU9A 3B2SA 2II4A 3MAEA 2E1VA 4JN3A 1L5AA 2BGHA 4G2MA 1E2OA 2II3A 3CRW1 1NOCB 1XL7A 5T3EA 1Q23A 3CRVA 3L60A 4KECA 1XMDA 2XHGA 3U9BA 5FALA 5KJWA 5KJUA 3CLAA 5KJSA 5H8WA 5DUAA 4JN5A 1CLAA 2ZBAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q9J A;  1XL8 A;  1EAA A;  1EAB A;  4HVM A;  1XMC A;  3FP0 A;  4G0B A;  2XR7 A;  4CLA A;  1C4T A;  1DPD A;  2I9D A;  2E1T A;  2JGP A;  3U9F A;  2RKV A;  3B30 A;  2VSQ A;  2IHW A;  5KJT A;  5KJV A;  4G22 A;  1DPB A;  1SCZ A;  2E1U A;  4KE4 A;  4N72 A;  2II5 A;  2CLA A;  2RKT A;  3FOT A;  1EAC A;  1DPC A;  1QCA A;  1EAD A;  1EAF A;  1PD5 A;  5FAN A;  1CIA A;  1EAE A;  5DU9 A;  3B2S A;  2II4 A;  3MAE A;  2E1V A;  4JN3 A;  1L5A A;  2BGH A;  4G2M A;  1E2O A;  2II3 A;  1NOC B;  1XL7 A;  5T3E A;  1Q23 A;  3L60 A;  4KEC A;  1XMD A;  2XHG A;  3U9B A;  5FAL A;  5KJW A;  5KJU A;  3CLA A;  5KJS A;  5DUA A;  4JN5 A;  1CLA A;  2ZBA A; 
#chains in the Genus database with same CATH topology
 1T6P A;  2RCU A;  2FY3 A;  3FP0 A;  4G0B A;  2OHY A;  2VSF A;  2XR7 A;  3CZO A;  2O7B A;  1XWO A;  1DPD A;  3TV2 A;  4HGV A;  2RKV A;  3B30 A;  2IHW A;  3OCE A;  1W27 A;  2NYF A;  1DPB A;  1SCZ A;  2E1U A;  4APB A;  2II5 A;  3NZ4 A;  1NDF A;  4APA A;  3NO9 A;  1QCA A;  1DCN A;  1U15 A;  5FAN A;  3RD8 A;  1CIA A;  2FY5 A;  2II4 A;  2RJR A;  4BAA A;  3MAE A;  1YIS A;  1L5A A;  2RJS A;  2BGH A;  1E2O A;  2II3 A;  3CRW 1;  1NOC B;  2VD6 A;  3E04 A;  2O7D A;  1HY0 A;  3L60 A;  1K62 A;  2XHG A;  3U9B A;  1Y2M A;  1FUR A;  5F92 A;  4C5U A;  1Q9J A;  1XL8 A;  1GK3 A;  2VL7 A;  1TJV A;  1EAA A;  1GK2 A;  4ADL A;  1EAB A;  2DEB A;  1XMC A;  2O78 A;  2PTR A;  1NM8 A;  2HVG A;  4CLA A;  2FY4 A;  1C3U A;  2I9D A;  4V2R A;  2QVE A;  1T1U A;  2FY2 A;  5KJV A;  1RE5 A;  2H3U A;  4KE4 A;  4N72 A;  5KJT A;  2PTS A;  4FLC A;  3FOT A;  5D6B A;  1EAC A;  2FUS A;  1DPC A;  4C5S A;  4MX2 A;  1EAD A;  1HY1 A;  2FW3 A;  5DU9 A;  3R6Y A;  1T7N A;  5F91 A;  4JN3 A;  4G2M A;  1JSW A;  1FUO A;  2O7E A;  3BHG A;  1NDB A;  2YII A;  4EFC A;  5EYV A;  5DUA A;  1K7W A;  2H4T A;  1T6J A;  3C8T A;  4JN5 A;  3R6V A;  4EP9 A;  4HVM A;  4NLE A;  4EEI A;  2H3P A;  4A15 A;  1C4T A;  2JGP A;  1T7Q A;  2VSQ A;  1AUW A;  2O7F A;  1I0A A;  2O6Y A;  2J91 A;  2H3W A;  1FUQ A;  5EYT A;  1EAF A;  1PD5 A;  2E9F A;  1KQ7 A;  3GTD A;  3RRP A;  1EAE A;  1S5O A;  3B2S A;  1C3C A;  1Q5N A;  2E1V A;  3R6Q A;  3GZH A;  1XL7 A;  3KDZ A;  4BAB A;  5T3E A;  3CRV A;  4KEC A;  4C5R A;  5FAL A;  5KJU A;  3CLA A;  2QGA B;  1TJU A;  4C6G A;  2ZBA A;  2FYO A;  1FUP A;  2PTQ A;  1GKM A;  1B8F A;  1NDI A;  1YFE A;  5HW2 A;  2E1T A;  4EYW A;  3U9F A;  3QBP A;  3KDY A;  2X75 A;  4G22 A;  1TJW A;  4CQ5 A;  2PFM A;  2CLA A;  1YFM A;  1TJ7 A;  2RKT A;  4EPH A;  3UNV A;  2NYN A;  1EB4 A;  1T7O A;  4FFX A;  4V2Q A;  1DOF A;  4NSL A;  1GKJ A;  1VDK A;  1Q23 A;  1U16 A;  1XMD A;  5KJS A;  5KJW A;  5H8W A;  4ADM A;  1Q6X A;  3OCF A;  1CLA A;  1J3U A; 
#chains in the Genus database with same CATH homology
 1Q9J A;  1XL8 A;  2VL7 A;  1EAA A;  1EAB A;  4HVM A;  4NLE A;  1XMC A;  3FP0 A;  4G0B A;  2XR7 A;  2VSF A;  4CLA A;  1C4T A;  4A15 A;  1DPD A;  2E1T A;  2I9D A;  2JGP A;  3U9F A;  2RKV A;  3B30 A;  2VSQ A;  2IHW A;  5KJT A;  5KJV A;  4G22 A;  1DPB A;  1SCZ A;  2E1U A;  4KE4 A;  4N72 A;  2II5 A;  2CLA A;  2RKT A;  3FOT A;  1EAC A;  1DPC A;  1QCA A;  1EAD A;  1EAF A;  1PD5 A;  5FAN A;  2E9F A;  1CIA A;  1EAE A;  5DU9 A;  3B2S A;  2II4 A;  3MAE A;  2E1V A;  4JN3 A;  1L5A A;  2BGH A;  4G2M A;  1E2O A;  2II3 A;  3CRW 1;  1NOC B;  1XL7 A;  5T3E A;  1Q23 A;  3CRV A;  3L60 A;  4KEC A;  1XMD A;  2XHG A;  3U9B A;  5FAL A;  5KJW A;  5KJU A;  3CLA A;  5KJS A;  5H8W A;  5DUA A;  4JN5 A;  1CLA A;  2ZBA A; 
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