4JN3A

Crystal structures of the first condensation domain of the cda synthetase
Total Genus 141
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
141
sequence length
446
structure length
446
Chain Sequence
b'NSSVRHGLTSAQHEVWLAQQLDPRGAHYRTGSCLEIDGPLDHAVLSRALRLTVAGTETLCSRFLTDEEGRPYRAYCPPAPEGSAAVEDPDGVPYTPVLLRHIDLSGHEDPEGEAQRWMDRDRATPLPLDRPGLSSHALFTLGGGRHLYYLGVHHIVIDGTSMALFYERLAEVYRALRDGRAVPAAAFGDTDRMVAGEEAYRASARYERDRAYWTGLFTDRPEPVSLTGRGGGRALAPTVRSLGLPPERTEVLGRAAEATGAHWARVVIAGVAAFLHRTTGARDVVVSVPVTGRYGANARITPGMVSNRLPLRLAVRPGESFARVVETVSEAMSGLLAHSRFRGEDLDRELGGAGVSGPTVNVMPYIRPVDFGGPVGLMRSISSGPTTDLNIVLTGTPESGLRVDFEGNPQVYGGQDLTVLQERFVRFLAELAADPAATVDEVALLT'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CDA peptide synthetase I
publication title Crystal Structures of the First Condensation Domain of CDA Synthetase Suggest Conformational Changes during the Synthetic Cycle of Nonribosomal Peptide Synthetases.
pubmed doi rcsb
source organism Streptomyces coelicolor
molecule tags Biosynthetic protein
total genus 141
structure length 446
sequence length 446
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-03-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 4jn3A01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 4jn3A02
2JGPA 4N72A 1EAFA 1EAAA 1CLAA 5KJSA 1DPCA 1DPDA 1EAEA 1Q23A 1XMDA 2BGHA 2II5A 4JN5A 1CIAA 1XMCA 4JN3A 1EADA 2I9DA 2XR7A 4G22A 5KJUA 2II3A 1QCAA 1L5AA 3MAEA 5T3EA 1PD5A 2E1UA 5KJVA 3FP0A 2RKTA 2RKVA 5KJTA 2II4A 5DU9A 5FALA 2CLAA 3U9BA 2E1TA 5KJWA 3B30A 4KE4A 3U9FA 4KECA 4HVMA 3L60A 4G2MA 3B2SA 4G0BA 4CLAA 1C4TA 5DUAA 1DPBA 1EABA 1EACA 1XL7A 2ZBAA 3FOTA 1XL8A 1E2OA 2VSQA 5FANA 2IHWA 1NOCB 2XHGA 3CLAA 1Q9JA 1SCZA 2E1VA
chains in the Genus database with same CATH superfamily
1DPCA 1EAEA 1Q23A 2DEBA 1T7NA 2II3A 4EYWA 4EPHA 2II4A 3U9FA 3L60A 1Q6XA 1XL7A 1XL8A 1E2OA 1T1UA 2FYOA 2FY5A 5FANA 2E1VA 2JGPA 2H4TA 1EAAA 2FW3A 1CLAA 5KJSA 4N72A 2XR7A 3MAEA 1NDBA 2E1UA 3FP0A 5KJTA 5KJWA 4KE4A 4KECA 4G2MA 3B2SA 5DUAA 1DPBA 2ZBAA 1NOCB 2XHGA 1NM8A 2H3PA 4JN3A 4JN5A 2II5A 2I9DA 5KJUA 2H3UA 5T3EA 1PD5A 2RKVA 5DU9A 2CLAA 2E1TA 3B30A 4HVMA 2FY2A 1C4TA 1NDIA 1EACA 2FY3A 2RCUA 2IHWA 2H3WA 1EAFA 2FY4A 1DPDA 1XMDA 2BGHA 1CIAA 1XMCA 1EADA 4G22A 1T7OA 1NDFA 1QCAA 1L5AA 4EP9A 5KJVA 2RKTA 5FALA 3U9BA 1T7QA 1S5OA 4G0BA 4CLAA 1EABA 3FOTA 2VSQA 3CLAA 1Q9JA 1SCZA
chains in the Genus database with same CATH topology
1DPCA 1EAEA 1Q23A 2DEBA 1T7NA 2II3A 4EYWA 4EPHA 2II4A 3U9FA 3L60A 1Q6XA 1XL7A 1XL8A 1E2OA 1T1UA 2FYOA 5FANA 2FY5A 2E1VA 2JGPA 2H4TA 1EAAA 2FW3A 1CLAA 5KJSA 4N72A 2XR7A 3MAEA 1NDBA 2E1UA 3FP0A 5KJTA 5KJWA 4KE4A 4KECA 4G2MA 3B2SA 5DUAA 1DPBA 2ZBAA 1NOCB 2XHGA 1NM8A 2H3PA 4JN3A 4JN5A 2II5A 2I9DA 5KJUA 5T3EA 2H3UA 1PD5A 2RKVA 5DU9A 2CLAA 2E1TA 3B30A 4HVMA 2FY2A 1C4TA 1NDIA 1EACA 2FY3A 2RCUA 2IHWA 2H3WA 1EAFA 2FY4A 1DPDA 1XMDA 2BGHA 1CIAA 1XMCA 1EADA 4G22A 1T7OA 1NDFA 1QCAA 1L5AA 4EP9A 5KJVA 2RKTA 5FALA 3U9BA 1T7QA 1S5OA 4G0BA 4CLAA 1EABA 3FOTA 2VSQA 3CLAA 1Q9JA 1SCZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JGP A;  4N72 A;  1EAF A;  1EAA A;  1CLA A;  5KJS A;  1DPC A;  1DPD A;  1EAE A;  1Q23 A;  1XMD A;  2BGH A;  2II5 A;  4JN5 A;  1CIA A;  1XMC A;  4JN3 A;  1EAD A;  2I9D A;  2XR7 A;  4G22 A;  5KJU A;  2II3 A;  1QCA A;  1L5A A;  3MAE A;  5T3E A;  1PD5 A;  2E1U A;  5KJV A;  3FP0 A;  2RKT A;  2RKV A;  5KJT A;  2II4 A;  5DU9 A;  5FAL A;  2CLA A;  3U9B A;  2E1T A;  5KJW A;  3B30 A;  4KE4 A;  3U9F A;  4KEC A;  4HVM A;  3L60 A;  4G2M A;  3B2S A;  4G0B A;  4CLA A;  1C4T A;  5DUA A;  1DPB A;  1EAB A;  1EAC A;  1XL7 A;  2ZBA A;  3FOT A;  1XL8 A;  1E2O A;  2VSQ A;  5FAN A;  2IHW A;  1NOC B;  2XHG A;  3CLA A;  1Q9J A;  1SCZ A;  2E1V A; 
#chains in the Genus database with same CATH topology
 1DPC A;  1EAE A;  1Q23 A;  2DEB A;  1T7N A;  2II3 A;  4EYW A;  4EPH A;  2II4 A;  3U9F A;  3L60 A;  1Q6X A;  1XL7 A;  1XL8 A;  1E2O A;  1T1U A;  2FYO A;  2FY5 A;  5FAN A;  2E1V A;  2JGP A;  2H4T A;  1EAA A;  2FW3 A;  1CLA A;  5KJS A;  4N72 A;  2XR7 A;  3MAE A;  1NDB A;  2E1U A;  3FP0 A;  5KJT A;  5KJW A;  4KE4 A;  4KEC A;  4G2M A;  3B2S A;  5DUA A;  1DPB A;  2ZBA A;  1NOC B;  2XHG A;  1NM8 A;  2H3P A;  4JN3 A;  4JN5 A;  2II5 A;  2I9D A;  5KJU A;  2H3U A;  5T3E A;  1PD5 A;  2RKV A;  5DU9 A;  2CLA A;  2E1T A;  3B30 A;  4HVM A;  2FY2 A;  1C4T A;  1NDI A;  1EAC A;  2FY3 A;  2RCU A;  2IHW A;  2H3W A;  1EAF A;  2FY4 A;  1DPD A;  1XMD A;  2BGH A;  1CIA A;  1XMC A;  1EAD A;  4G22 A;  1T7O A;  1NDF A;  1QCA A;  1L5A A;  4EP9 A;  5KJV A;  2RKT A;  5FAL A;  3U9B A;  1T7Q A;  1S5O A;  4G0B A;  4CLA A;  1EAB A;  3FOT A;  2VSQ A;  3CLA A;  1Q9J A;  1SCZ A; 
#chains in the Genus database with same CATH homology
 1DPC A;  1EAE A;  1Q23 A;  2DEB A;  1T7N A;  2II3 A;  4EYW A;  4EPH A;  2II4 A;  3U9F A;  3L60 A;  1Q6X A;  1XL7 A;  1XL8 A;  1E2O A;  1T1U A;  2FYO A;  5FAN A;  2FY5 A;  2E1V A;  2JGP A;  2H4T A;  1EAA A;  2FW3 A;  1CLA A;  5KJS A;  4N72 A;  2XR7 A;  3MAE A;  1NDB A;  2E1U A;  3FP0 A;  5KJT A;  5KJW A;  4KE4 A;  4KEC A;  4G2M A;  3B2S A;  5DUA A;  1DPB A;  2ZBA A;  1NOC B;  2XHG A;  1NM8 A;  2H3P A;  4JN3 A;  4JN5 A;  2II5 A;  2I9D A;  5KJU A;  5T3E A;  2H3U A;  1PD5 A;  2RKV A;  5DU9 A;  2CLA A;  2E1T A;  3B30 A;  4HVM A;  2FY2 A;  1C4T A;  1NDI A;  1EAC A;  2FY3 A;  2RCU A;  2IHW A;  2H3W A;  1EAF A;  2FY4 A;  1DPD A;  1XMD A;  2BGH A;  1CIA A;  1XMC A;  1EAD A;  4G22 A;  1T7O A;  1NDF A;  1QCA A;  1L5A A;  4EP9 A;  5KJV A;  2RKT A;  5FAL A;  3U9B A;  1T7Q A;  1S5O A;  4G0B A;  4CLA A;  1EAB A;  3FOT A;  2VSQ A;  3CLA A;  1Q9J A;  1SCZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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