1Q9JA

Structure of polyketide synthase associated protein 5 from mycobacterium tuberculosis
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
418
structure length
388
Chain Sequence
MFPGSVIRKLSHSEEVFAQYEVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGICVIDAELRLDQSVSLLHLQLILREGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAVTTGDPGPITPQPTPLSMEAVLAQRGIRKAERFMSVMYAYPGLPQAVPVTRLWLSKQQTSDLMAFGREHRLSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGPNTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTMRTPPGLEIEDIKGQFYCSISVPLDLYSCAVYAGQLIIEHHGHIAEPGKSLEAIRSLLCTVPSEYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Polyketide synthase associated protein 5
publication title Crystal Structure of PapA5, a Phthiocerol Dimycocerosyl Transferase from Mycobacterium tuberculosis
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Ligase
total genus 105
structure length 388
sequence length 418
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16911 PapA_C Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1q9jA01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1q9jA02
4G0BA 2RKTA 1XL7A 1NOCB 4JN5A 1L5AA 2XR7A 5KJUA 2VSQA 3CLAA 1Q9JA 4G2MA 1EACA 1XMDA 5DUAA 3U9BA 4HVMA 1XL8A 2E1TA 1C4TA 1EADA 2IHWA 2RKVA 1Q23A 4KE4A 1QCAA 5FALA 5KJVA 1EAFA 2I9DA 3B2SA 1CIAA 2JGPA 2E1UA 2BGHA 1SCZA 3FOTA 1DPBA 1E2OA 1PD5A 5KJWA 4CLAA 5KJSA 3L60A 5FANA 3B30A 4N72A 5DU9A 5T3EA 2E1VA 3FP0A 1EAAA 2II5A 2II3A 4G22A 4JN3A 3U9FA 2XHGA 1XMCA 2II4A 1DPCA 1EABA 2CLAA 4KECA 1DPDA 1EAEA 1CLAA 5KJTA 3MAEA 2ZBAA
chains in the Genus database with same CATH superfamily
2RKTA 4JN5A 1S5OA 1EACA 5DUAA 1T7NA 1XL8A 2E1TA 2RKVA 2H3UA 1QCAA 2DEBA 2H4TA 1NDIA 1CIAA 2JGPA 3B2SA 1E2OA 5KJSA 5DU9A 3FP0A 2II5A 2II3A 2XHGA 1DPCA 1EABA 1EAEA 1CLAA 1XL7A 1NDBA 1L5AA 1NDFA 4G2MA 4HVMA 2FY5A 1T7QA 1Q6XA 2FY4A 1EAFA 2I9DA 2E1UA 1NM8A 4EPHA 1DPBA 1PD5A 3L60A 2H3PA 4G22A 1XMCA 2H3WA 1DPDA 4G0BA 2FY3A 2XR7A 2VSQA 2IHWA 1C4TA 1EADA 4KE4A 4EYWA 2BGHA 1SCZA 4CLAA 5FANA 5T3EA 1EAAA 4JN3A 2II4A 2CLAA 4KECA 5KJTA 2RCUA 1NOCB 5KJUA 3CLAA 1Q9JA 1XMDA 3U9BA 1T1UA 1Q23A 2FY2A 5FALA 5KJVA 3FOTA 2FW3A 5KJWA 2FYOA 3B30A 4N72A 2E1VA 4EP9A 3U9FA 3MAEA 1T7OA 2ZBAA
chains in the Genus database with same CATH topology
2RKTA 4JN5A 1S5OA 1EACA 5DUAA 1T7NA 1XL8A 2E1TA 2RKVA 2H3UA 1QCAA 2DEBA 2H4TA 3B2SA 1CIAA 2JGPA 1NDIA 1E2OA 5KJSA 5DU9A 3FP0A 2II5A 2II3A 2XHGA 1DPCA 1EABA 1EAEA 1CLAA 1XL7A 1L5AA 1NDBA 1NDFA 4G2MA 4HVMA 2FY5A 1T7QA 1Q6XA 2FY4A 1EAFA 2I9DA 2E1UA 1NM8A 4EPHA 1DPBA 1PD5A 3L60A 2H3PA 4G22A 1XMCA 2H3WA 1DPDA 4G0BA 2FY3A 2XR7A 2VSQA 2IHWA 1C4TA 1EADA 4KE4A 4EYWA 2BGHA 1SCZA 4CLAA 5FANA 5T3EA 1EAAA 4JN3A 2II4A 2CLAA 4KECA 5KJTA 2RCUA 1NOCB 5KJUA 3CLAA 1Q9JA 1XMDA 3U9BA 1T1UA 1Q23A 2FY2A 5FALA 5KJVA 3FOTA 2FW3A 5KJWA 2FYOA 3B30A 4N72A 2E1VA 4EP9A 3U9FA 3MAEA 1T7OA 2ZBAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4G0B A;  2RKT A;  1XL7 A;  1NOC B;  4JN5 A;  1L5A A;  2XR7 A;  5KJU A;  2VSQ A;  3CLA A;  1Q9J A;  4G2M A;  1EAC A;  1XMD A;  5DUA A;  3U9B A;  4HVM A;  1XL8 A;  2E1T A;  1C4T A;  1EAD A;  2IHW A;  2RKV A;  1Q23 A;  4KE4 A;  1QCA A;  5FAL A;  5KJV A;  1EAF A;  2I9D A;  3B2S A;  1CIA A;  2JGP A;  2E1U A;  2BGH A;  1SCZ A;  3FOT A;  1DPB A;  1E2O A;  1PD5 A;  5KJW A;  4CLA A;  5KJS A;  3L60 A;  5FAN A;  3B30 A;  4N72 A;  5DU9 A;  5T3E A;  2E1V A;  3FP0 A;  1EAA A;  2II5 A;  2II3 A;  4G22 A;  4JN3 A;  3U9F A;  2XHG A;  1XMC A;  2II4 A;  1DPC A;  1EAB A;  2CLA A;  4KEC A;  1DPD A;  1EAE A;  1CLA A;  5KJT A;  3MAE A;  2ZBA A; 
#chains in the Genus database with same CATH topology
 2RKT A;  4JN5 A;  1S5O A;  1EAC A;  5DUA A;  1T7N A;  1XL8 A;  2E1T A;  2RKV A;  2H3U A;  1QCA A;  2DEB A;  2H4T A;  1NDI A;  1CIA A;  2JGP A;  3B2S A;  1E2O A;  5KJS A;  5DU9 A;  3FP0 A;  2II5 A;  2II3 A;  2XHG A;  1DPC A;  1EAB A;  1EAE A;  1CLA A;  1XL7 A;  1NDB A;  1L5A A;  1NDF A;  4G2M A;  4HVM A;  2FY5 A;  1T7Q A;  1Q6X A;  2FY4 A;  1EAF A;  2I9D A;  2E1U A;  1NM8 A;  4EPH A;  1DPB A;  1PD5 A;  3L60 A;  2H3P A;  4G22 A;  1XMC A;  2H3W A;  1DPD A;  4G0B A;  2FY3 A;  2XR7 A;  2VSQ A;  2IHW A;  1C4T A;  1EAD A;  4KE4 A;  4EYW A;  2BGH A;  1SCZ A;  4CLA A;  5FAN A;  5T3E A;  1EAA A;  4JN3 A;  2II4 A;  2CLA A;  4KEC A;  5KJT A;  2RCU A;  1NOC B;  5KJU A;  3CLA A;  1Q9J A;  1XMD A;  3U9B A;  1T1U A;  1Q23 A;  2FY2 A;  5FAL A;  5KJV A;  3FOT A;  2FW3 A;  5KJW A;  2FYO A;  3B30 A;  4N72 A;  2E1V A;  4EP9 A;  3U9F A;  3MAE A;  1T7O A;  2ZBA A; 
#chains in the Genus database with same CATH homology
 2RKT A;  4JN5 A;  1S5O A;  1EAC A;  5DUA A;  1T7N A;  1XL8 A;  2E1T A;  2RKV A;  2H3U A;  1QCA A;  2DEB A;  2H4T A;  3B2S A;  1CIA A;  2JGP A;  1NDI A;  1E2O A;  5KJS A;  5DU9 A;  3FP0 A;  2II5 A;  2II3 A;  2XHG A;  1DPC A;  1EAB A;  1EAE A;  1CLA A;  1XL7 A;  1L5A A;  1NDB A;  1NDF A;  4G2M A;  4HVM A;  2FY5 A;  1T7Q A;  1Q6X A;  2FY4 A;  1EAF A;  2I9D A;  2E1U A;  1NM8 A;  4EPH A;  1DPB A;  1PD5 A;  3L60 A;  2H3P A;  4G22 A;  1XMC A;  2H3W A;  1DPD A;  4G0B A;  2FY3 A;  2XR7 A;  2VSQ A;  2IHW A;  1C4T A;  1EAD A;  4KE4 A;  4EYW A;  2BGH A;  1SCZ A;  4CLA A;  5FAN A;  5T3E A;  1EAA A;  4JN3 A;  2II4 A;  2CLA A;  4KEC A;  5KJT A;  2RCU A;  1NOC B;  5KJU A;  3CLA A;  1Q9J A;  1XMD A;  3U9B A;  1T1U A;  1Q23 A;  2FY2 A;  5FAL A;  5KJV A;  3FOT A;  2FW3 A;  5KJW A;  2FYO A;  3B30 A;  4N72 A;  2E1V A;  4EP9 A;  3U9F A;  3MAE A;  1T7O A;  2ZBA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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