1Q9JA

Structure of polyketide synthase associated protein 5 from mycobacterium tuberculosis
Total Genus 105
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
418
structure length
388
Chain Sequence
MFPGSVIRKLSHSEEVFAQYEVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGICVIDAELRLDQSVSLLHLQLILREGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAVTTGDPGPITPQPTPLSMEAVLAQRGIRKAERFMSVMYAYPGLPQAVPVTRLWLSKQQTSDLMAFGREHRLSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGPNTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTMRTPPGLEIEDIKGQFYCSISVPLDLYSCAVYAGQLIIEHHGHIAEPGKSLEAIRSLLCTVPSEYG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ligase
molecule keywords Polyketide synthase associated protein 5
publication title Crystal Structure of PapA5, a Phthiocerol Dimycocerosyl Transferase from Mycobacterium tuberculosis
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 105
structure length 388
sequence length 418
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16911 PapA_C Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1q9jA01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1q9jA02
5FALA 1QCAA 2XR7A 3L60A 3U9BA 1EABA 5T3EA 1XL8A 2IHWA 4JN5A 1EACA 5DUAA 1XMCA 2VSQA 5KJVA 1SCZA 3FOTA 1DPBA 5FANA 2II4A 1EAEA 2BGHA 2RKVA 1DPCA 4G2MA 1Q23A 3CLAA 1XMDA 2JGPA 5DU9A 1PD5A 4HVMA 4KE4A 4CLAA 4JN3A 4N72A 5KJWA 1E2OA 2ZBAA 1XL7A 2E1TA 1EAFA 4G0BA 3B30A 1EADA 2I9DA 5KJTA 4G22A 1L5AA 3B2SA 2E1VA 3MAEA 1Q9JA 1EAAA 5KJUA 1DPDA 2E1UA 4KECA 3U9FA 5KJSA 2II5A 2II3A 2RKTA 1NOCB 2CLAA 1C4TA 2XHGA 1CLAA 1CIAA 3FP0A
chains in the Genus database with same CATH superfamily
1QCAA 3L60A 3U9BA 1EABA 5T3EA 2IHWA 4EPHA 1XMCA 2VSQA 1EAEA 2JGPA 5DU9A 1PD5A 2FY5A 4G0BA 1XL7A 2I9DA 1L5AA 1T7OA 1DPDA 2H3WA 1NOCB 1C4TA 2XHGA 4JN3A 2DEBA 4JN5A 2H3UA 2FY4A 1NDIA 1NDFA 1Q23A 3CLAA 1XMDA 1EAFA 2E1VA 2CLAA 1CLAA 1CIAA 2FY3A 1XL8A 1EACA 1T7NA 1NM8A 3FOTA 1S5OA 1T1UA 1Q6XA 2RCUA 1DPCA 4G2MA 4KE4A 2FW3A 4N72A 1E2OA 2ZBAA 5KJWA 5KJSA 1NDBA 2II5A 2E1TA 2FYOA 5FALA 2XR7A 4EYWA 5DUAA 5KJVA 1SCZA 1DPBA 5FANA 2II4A 2BGHA 2RKVA 2H4TA 4HVMA 4CLAA 4EP9A 1T7QA 5KJTA 3B30A 1EADA 4G22A 2H3PA 3B2SA 3MAEA 1Q9JA 1EAAA 5KJUA 2E1UA 4KECA 3U9FA 2RKTA 2II3A 2FY2A 3FP0A
chains in the Genus database with same CATH topology
1QCAA 3L60A 3U9BA 1EABA 5T3EA 2IHWA 4EPHA 1XMCA 2VSQA 1EAEA 2JGPA 5DU9A 1PD5A 2FY5A 4G0BA 1XL7A 2I9DA 1L5AA 1T7OA 1DPDA 2H3WA 1NOCB 1C4TA 2XHGA 4JN3A 2DEBA 4JN5A 2H3UA 2FY4A 1NDIA 1NDFA 1Q23A 3CLAA 1XMDA 1EAFA 2E1VA 2CLAA 1CLAA 1CIAA 2FY3A 1XL8A 1EACA 1T7NA 1NM8A 3FOTA 1S5OA 1T1UA 1Q6XA 2RCUA 1DPCA 4G2MA 4KE4A 4N72A 5KJWA 1E2OA 2ZBAA 5KJSA 2FW3A 1NDBA 2II5A 2E1TA 2FYOA 5FALA 2XR7A 4EYWA 5DUAA 5KJVA 1SCZA 1DPBA 5FANA 2II4A 2BGHA 2RKVA 2H4TA 4HVMA 4CLAA 4EP9A 1T7QA 5KJTA 3B30A 1EADA 4G22A 2H3PA 3B2SA 3MAEA 1Q9JA 1EAAA 5KJUA 2E1UA 4KECA 3U9FA 2RKTA 2II3A 2FY2A 3FP0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FAL A;  1QCA A;  2XR7 A;  3L60 A;  3U9B A;  1EAB A;  5T3E A;  1XL8 A;  2IHW A;  4JN5 A;  1EAC A;  5DUA A;  1XMC A;  2VSQ A;  5KJV A;  1SCZ A;  3FOT A;  1DPB A;  5FAN A;  2II4 A;  1EAE A;  2BGH A;  2RKV A;  1DPC A;  4G2M A;  1Q23 A;  3CLA A;  1XMD A;  2JGP A;  5DU9 A;  1PD5 A;  4HVM A;  4KE4 A;  4CLA A;  4JN3 A;  4N72 A;  5KJW A;  1E2O A;  2ZBA A;  1XL7 A;  2E1T A;  1EAF A;  4G0B A;  3B30 A;  1EAD A;  2I9D A;  5KJT A;  4G22 A;  1L5A A;  3B2S A;  2E1V A;  3MAE A;  1Q9J A;  1EAA A;  5KJU A;  1DPD A;  2E1U A;  4KEC A;  3U9F A;  5KJS A;  2II5 A;  2II3 A;  2RKT A;  1NOC B;  2CLA A;  1C4T A;  2XHG A;  1CLA A;  1CIA A;  3FP0 A; 
#chains in the Genus database with same CATH topology
 1QCA A;  3L60 A;  3U9B A;  1EAB A;  5T3E A;  2IHW A;  4EPH A;  1XMC A;  2VSQ A;  1EAE A;  2JGP A;  5DU9 A;  1PD5 A;  2FY5 A;  4G0B A;  1XL7 A;  2I9D A;  1L5A A;  1T7O A;  1DPD A;  2H3W A;  1NOC B;  1C4T A;  2XHG A;  4JN3 A;  2DEB A;  4JN5 A;  2H3U A;  2FY4 A;  1NDI A;  1NDF A;  1Q23 A;  3CLA A;  1XMD A;  1EAF A;  2E1V A;  2CLA A;  1CLA A;  1CIA A;  2FY3 A;  1XL8 A;  1EAC A;  1T7N A;  1NM8 A;  3FOT A;  1S5O A;  1T1U A;  1Q6X A;  2RCU A;  1DPC A;  4G2M A;  4KE4 A;  2FW3 A;  4N72 A;  1E2O A;  2ZBA A;  5KJW A;  5KJS A;  1NDB A;  2II5 A;  2E1T A;  2FYO A;  5FAL A;  2XR7 A;  4EYW A;  5DUA A;  5KJV A;  1SCZ A;  1DPB A;  5FAN A;  2II4 A;  2BGH A;  2RKV A;  2H4T A;  4HVM A;  4CLA A;  4EP9 A;  1T7Q A;  5KJT A;  3B30 A;  1EAD A;  4G22 A;  2H3P A;  3B2S A;  3MAE A;  1Q9J A;  1EAA A;  5KJU A;  2E1U A;  4KEC A;  3U9F A;  2RKT A;  2II3 A;  2FY2 A;  3FP0 A; 
#chains in the Genus database with same CATH homology
 1QCA A;  3L60 A;  3U9B A;  1EAB A;  5T3E A;  2IHW A;  4EPH A;  1XMC A;  2VSQ A;  1EAE A;  2JGP A;  5DU9 A;  1PD5 A;  2FY5 A;  4G0B A;  1XL7 A;  2I9D A;  1L5A A;  1T7O A;  1DPD A;  2H3W A;  1NOC B;  1C4T A;  2XHG A;  4JN3 A;  2DEB A;  4JN5 A;  2H3U A;  2FY4 A;  1NDI A;  1NDF A;  1Q23 A;  3CLA A;  1XMD A;  1EAF A;  2E1V A;  2CLA A;  1CLA A;  1CIA A;  2FY3 A;  1XL8 A;  1EAC A;  1T7N A;  1NM8 A;  3FOT A;  1S5O A;  1T1U A;  1Q6X A;  2RCU A;  1DPC A;  4G2M A;  4KE4 A;  4N72 A;  5KJW A;  1E2O A;  2ZBA A;  5KJS A;  2FW3 A;  1NDB A;  2II5 A;  2E1T A;  2FYO A;  5FAL A;  2XR7 A;  4EYW A;  5DUA A;  5KJV A;  1SCZ A;  1DPB A;  5FAN A;  2II4 A;  2BGH A;  2RKV A;  2H4T A;  4HVM A;  4CLA A;  4EP9 A;  1T7Q A;  5KJT A;  3B30 A;  1EAD A;  4G22 A;  2H3P A;  3B2S A;  3MAE A;  1Q9J A;  1EAA A;  5KJU A;  2E1U A;  4KEC A;  3U9F A;  2RKT A;  2II3 A;  2FY2 A;  3FP0 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...