1Q9JA

Structure of polyketide synthase associated protein 5 from mycobacterium tuberculosis
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
418
structure length
388
Chain Sequence
b'MFPGSVIRKLSHSEEVFAQYEVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGICVIDAELRLDQSVSLLHLQLILREGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAVTTGDPGPITPQPTPLSMEAVLAQRGIRKAERFMSVMYAYPGLPQAVPVTRLWLSKQQTSDLMAFGREHRLSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGPNTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTMRTPPGLEIEDIKGQFYCSISVPLDLYSCAVYAGQLIIEHHGHIAEPGKSLEAIRSLLCTVPSEYG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Polyketide synthase associated protein 5
publication title Crystal Structure of PapA5, a Phthiocerol Dimycocerosyl Transferase from Mycobacterium tuberculosis
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Ligase
total genus 105
structure length 388
sequence length 418
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16911 PapA_C Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1q9jA01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1q9jA02
3U9FA 2I9DA 5KJTA 1NOCB 1DPCA 2E1VA 2IHWA 4HVMA 2JGPA 1DPBA 2CLAA 3FP0A 3FOTA 3MAEA 5KJWA 2XHGA 5DUAA 1XMDA 5DU9A 1CIAA 4G0BA 5T3EA 1DPDA 4KE4A 4KECA 5KJSA 1EACA 1EAFA 1XL7A 2E1TA 2XR7A 2VSQA 1EABA 1SCZA 1XL8A 2RKVA 3L60A 3U9BA 5FANA 4N72A 5KJUA 5KJVA 4G2MA 4CLAA 1EAAA 2II4A 2RKTA 3B30A 1PD5A 1CLAA 1L5AA 1C4TA 4G22A 4JN3A 2E1UA 2ZBAA 1EAEA 1Q23A 1QCAA 1EADA 1XMCA 2BGHA 2II5A 3B2SA 3CLAA 2II3A 4JN5A 5FALA 1E2OA 1Q9JA
chains in the Genus database with same CATH superfamily
2DEBA 2I9DA 3FP0A 2CLAA 5KJWA 4EP9A 2FYOA 2E1TA 2VSQA 1EABA 2FW3A 3L60A 4G2MA 4CLAA 1T1UA 2II4A 1C4TA 4JN3A 2FY2A 2ZBAA 1QCAA 2RKTA 1E2OA 1T7QA 3U9FA 2H4TA 1NOCB 2E1VA 2IHWA 2FY5A 3FOTA 2RCUA 2H3UA 2XHGA 5DU9A 4KECA 2H3WA 4EPHA 2XR7A 1SCZA 5KJUA 1NDIA 2H3PA 1EAAA 1L5AA 1PD5A 4EYWA 1Q23A 1EADA 2BGHA 3CLAA 1CLAA 1Q9JA 4HVMA 1T7OA 1DPBA 3MAEA 5DUAA 5T3EA 2FY4A 1CIAA 4G0BA 1S5OA 1DPDA 4KE4A 1EAFA 1XL7A 3U9BA 5FANA 4G22A 2E1UA 1EAEA 2II5A 3B2SA 5FALA 2FY3A 5KJTA 1DPCA 2JGPA 1NM8A 1XMDA 1Q6XA 1NDFA 5KJSA 1EACA 1XL8A 2RKVA 4N72A 5KJVA 3B30A 1T7NA 1NDBA 1XMCA 4JN5A 2II3A
chains in the Genus database with same CATH topology
2DEBA 2I9DA 3FP0A 2CLAA 5KJWA 4EP9A 2FYOA 2E1TA 2VSQA 1EABA 2FW3A 3L60A 4G2MA 4CLAA 2II4A 1T1UA 1C4TA 4JN3A 2FY2A 2ZBAA 1QCAA 2RKTA 1E2OA 1T7QA 3U9FA 2H4TA 1NOCB 2E1VA 2IHWA 2FY5A 3FOTA 2RCUA 2XHGA 2H3UA 5DU9A 4KECA 2H3WA 4EPHA 2XR7A 1SCZA 5KJUA 1NDIA 2H3PA 1EAAA 1L5AA 1PD5A 4EYWA 1Q23A 1EADA 2BGHA 3CLAA 1CLAA 1Q9JA 4HVMA 1T7OA 1DPBA 3MAEA 5DUAA 5T3EA 2FY4A 1CIAA 4G0BA 1S5OA 1DPDA 4KE4A 1EAFA 1XL7A 3U9BA 5FANA 4G22A 2E1UA 1EAEA 2II5A 3B2SA 5FALA 2FY3A 5KJTA 1DPCA 2JGPA 1NM8A 1XMDA 1Q6XA 1NDFA 5KJSA 1EACA 1XL8A 2RKVA 4N72A 5KJVA 3B30A 1T7NA 1NDBA 1XMCA 4JN5A 2II3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U9F A;  2I9D A;  5KJT A;  1NOC B;  1DPC A;  2E1V A;  2IHW A;  4HVM A;  2JGP A;  1DPB A;  2CLA A;  3FP0 A;  3FOT A;  3MAE A;  5KJW A;  2XHG A;  5DUA A;  1XMD A;  5DU9 A;  1CIA A;  4G0B A;  5T3E A;  1DPD A;  4KE4 A;  4KEC A;  5KJS A;  1EAC A;  1EAF A;  1XL7 A;  2E1T A;  2XR7 A;  2VSQ A;  1EAB A;  1SCZ A;  1XL8 A;  2RKV A;  3L60 A;  3U9B A;  5FAN A;  4N72 A;  5KJU A;  5KJV A;  4G2M A;  4CLA A;  1EAA A;  2II4 A;  2RKT A;  3B30 A;  1PD5 A;  1CLA A;  1L5A A;  1C4T A;  4G22 A;  4JN3 A;  2E1U A;  2ZBA A;  1EAE A;  1Q23 A;  1QCA A;  1EAD A;  1XMC A;  2BGH A;  2II5 A;  3B2S A;  3CLA A;  2II3 A;  4JN5 A;  5FAL A;  1E2O A;  1Q9J A; 
#chains in the Genus database with same CATH topology
 2DEB A;  2I9D A;  3FP0 A;  2CLA A;  5KJW A;  4EP9 A;  2FYO A;  2E1T A;  2VSQ A;  1EAB A;  2FW3 A;  3L60 A;  4G2M A;  4CLA A;  1T1U A;  2II4 A;  1C4T A;  4JN3 A;  2FY2 A;  2ZBA A;  1QCA A;  2RKT A;  1E2O A;  1T7Q A;  3U9F A;  2H4T A;  1NOC B;  2E1V A;  2IHW A;  2FY5 A;  3FOT A;  2RCU A;  2H3U A;  2XHG A;  5DU9 A;  4KEC A;  2H3W A;  4EPH A;  2XR7 A;  1SCZ A;  5KJU A;  1NDI A;  2H3P A;  1EAA A;  1L5A A;  1PD5 A;  4EYW A;  1Q23 A;  1EAD A;  2BGH A;  3CLA A;  1CLA A;  1Q9J A;  4HVM A;  1T7O A;  1DPB A;  3MAE A;  5DUA A;  5T3E A;  2FY4 A;  1CIA A;  4G0B A;  1S5O A;  1DPD A;  4KE4 A;  1EAF A;  1XL7 A;  3U9B A;  5FAN A;  4G22 A;  2E1U A;  1EAE A;  2II5 A;  3B2S A;  5FAL A;  2FY3 A;  5KJT A;  1DPC A;  2JGP A;  1NM8 A;  1XMD A;  1Q6X A;  1NDF A;  5KJS A;  1EAC A;  1XL8 A;  2RKV A;  4N72 A;  5KJV A;  3B30 A;  1T7N A;  1NDB A;  1XMC A;  4JN5 A;  2II3 A; 
#chains in the Genus database with same CATH homology
 2DEB A;  2I9D A;  3FP0 A;  2CLA A;  5KJW A;  4EP9 A;  2FYO A;  2E1T A;  2VSQ A;  1EAB A;  2FW3 A;  3L60 A;  4G2M A;  4CLA A;  2II4 A;  1T1U A;  1C4T A;  4JN3 A;  2FY2 A;  2ZBA A;  1QCA A;  2RKT A;  1E2O A;  1T7Q A;  3U9F A;  2H4T A;  1NOC B;  2E1V A;  2IHW A;  2FY5 A;  3FOT A;  2RCU A;  2XHG A;  2H3U A;  5DU9 A;  4KEC A;  2H3W A;  4EPH A;  2XR7 A;  1SCZ A;  5KJU A;  1NDI A;  2H3P A;  1EAA A;  1L5A A;  1PD5 A;  4EYW A;  1Q23 A;  1EAD A;  2BGH A;  3CLA A;  1CLA A;  1Q9J A;  4HVM A;  1T7O A;  1DPB A;  3MAE A;  5DUA A;  5T3E A;  2FY4 A;  1CIA A;  4G0B A;  1S5O A;  1DPD A;  4KE4 A;  1EAF A;  1XL7 A;  3U9B A;  5FAN A;  4G22 A;  2E1U A;  1EAE A;  2II5 A;  3B2S A;  5FAL A;  2FY3 A;  5KJT A;  1DPC A;  2JGP A;  1NM8 A;  1XMD A;  1Q6X A;  1NDF A;  5KJS A;  1EAC A;  1XL8 A;  2RKV A;  4N72 A;  5KJV A;  3B30 A;  1T7N A;  1NDB A;  1XMC A;  4JN5 A;  2II3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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