The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
105
|
sequence length |
418
|
structure length |
388
|
Chain Sequence |
MFPGSVIRKLSHSEEVFAQYEVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGICVIDAELRLDQSVSLLHLQLILREGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAVTTGDPGPITPQPTPLSMEAVLAQRGIRKAERFMSVMYAYPGLPQAVPVTRLWLSKQQTSDLMAFGREHRLSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGPNTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTMRTPPGLEIEDIKGQFYCSISVPLDLYSCAVYAGQLIIEHHGHIAEPGKSLEAIRSLLCTVPSEYG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Ligase
|
| source organism |
Mycobacterium tuberculosis
|
| publication title |
Crystal Structure of PapA5, a Phthiocerol Dimycocerosyl Transferase from Mycobacterium tuberculosis
pubmed doi rcsb |
| molecule keywords |
Polyketide synthase associated protein 5
|
| total genus |
105
|
| structure length |
388
|
| sequence length |
418
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2003-08-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16911 | PapA_C | Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Chloramphenicol Acetyltransferase | Chloramphenicol acetyltransferase-like domain | ||
| Alpha Beta | 2-Layer Sandwich | Chloramphenicol Acetyltransferase | Chloramphenicol Acetyltransferase |
#chains in the Genus database with same CATH superfamily 5KJW A; 4N72 A; 1SCZ A; 5KJS A; 1EAA A; 3FOT A; 1C4T A; 1EAD A; 3FP0 A; 1DPD A; 2IHW A; 4G22 A; 2XR7 A; 1DPC A; 1QCA A; 2XHG A; 1EAB A; 1Q9J A; 2ZBA A; 1CLA A; 1L5A A; 2VSQ A; 1XL7 A; 1XMD A; 5T3E A; 1NOC B; 2BGH A; 2E1V A; 4JN5 A; 1XL8 A; 1EAE A; 3U9F A; 1DPB A; 2RKT A; 2II3 A; 2II5 A; 3MAE A; 4JN3 A; 2E1U A; 2JGP A; 5DUA A; 4KEC A; 4CLA A; 3B30 A; 5DU9 A; 1EAC A; 2I9D A; 1E2O A; 1EAF A; 2CLA A; 1CIA A; 4G2M A; 3B2S A; 3CLA A; 5KJV A; 2II4 A; 5FAN A; 4KE4 A; 5KJT A; 4G0B A; 2RKV A; 1Q23 A; 5FAL A; 3U9B A; 1PD5 A; 2E1T A; 5KJU A; 3L60 A; 4HVM A; 1XMC A; #chains in the Genus database with same CATH topology 1Q6X A; 2IHW A; 1S5O A; 4G22 A; 2XR7 A; 1DPC A; 2XHG A; 1T7O A; 1Q9J A; 2FY4 A; 2FY3 A; 1T7N A; 2RKT A; 3MAE A; 2FW3 A; 2JGP A; 2FYO A; 1EAF A; 1NDB A; 4EYW A; 1T1U A; 5FAN A; 4KE4 A; 1Q23 A; 5FAL A; 1NDI A; 4N72 A; 3FP0 A; 1L5A A; 5T3E A; 2E1V A; 4JN5 A; 1XL8 A; 1DPB A; 2II3 A; 4JN3 A; 2E1U A; 4KEC A; 2I9D A; 4EPH A; 1NDF A; 2CLA A; 2RCU A; 3B2S A; 2II4 A; 1PD5 A; 5KJU A; 1XMC A; 5KJW A; 2H3W A; 1DPD A; 2H3P A; 2H3U A; 1QCA A; 1EAB A; 2ZBA A; 2H4T A; 2VSQ A; 1XMD A; 2BGH A; 3U9F A; 1EAE A; 3B30 A; 1EAC A; 1E2O A; 1CIA A; 4G2M A; 3CLA A; 5KJT A; 2RKV A; 2E1T A; 3L60 A; 1T7Q A; 4HVM A; 5KJS A; 1SCZ A; 1EAA A; 3FOT A; 1C4T A; 1EAD A; 2DEB A; 1CLA A; 1NM8 A; 1XL7 A; 1NOC B; 2II5 A; 5DUA A; 4CLA A; 4EP9 A; 5DU9 A; 5KJV A; 2FY2 A; 4G0B A; 3U9B A; 2FY5 A; #chains in the Genus database with same CATH homology 1Q6X A; 2IHW A; 1S5O A; 4G22 A; 2XR7 A; 1DPC A; 2XHG A; 1T7O A; 1Q9J A; 2FY4 A; 2FY3 A; 1T7N A; 2RKT A; 3MAE A; 2FW3 A; 2JGP A; 2FYO A; 1EAF A; 1NDB A; 4EYW A; 1T1U A; 5FAN A; 4KE4 A; 1Q23 A; 5FAL A; 1NDI A; 4N72 A; 3FP0 A; 1L5A A; 5T3E A; 2E1V A; 4JN5 A; 1XL8 A; 1DPB A; 2II3 A; 4JN3 A; 2E1U A; 4KEC A; 2I9D A; 4EPH A; 1NDF A; 2CLA A; 2RCU A; 3B2S A; 2II4 A; 1PD5 A; 5KJU A; 1XMC A; 5KJW A; 2H3W A; 1DPD A; 2H3P A; 2H3U A; 1QCA A; 1EAB A; 2ZBA A; 2H4T A; 2VSQ A; 1XMD A; 2BGH A; 3U9F A; 1EAE A; 3B30 A; 1EAC A; 1E2O A; 1CIA A; 4G2M A; 3CLA A; 5KJT A; 2RKV A; 2E1T A; 3L60 A; 1T7Q A; 4HVM A; 5KJS A; 1SCZ A; 1EAA A; 3FOT A; 1C4T A; 1EAD A; 2DEB A; 1CLA A; 1NM8 A; 1XL7 A; 1NOC B; 2II5 A; 5DUA A; 4CLA A; 4EP9 A; 5DU9 A; 5KJV A; 2FY2 A; 4G0B A; 3U9B A; 2FY5 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
