1Q9JA

Structure of polyketide synthase associated protein 5 from mycobacterium tuberculosis
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
418
structure length
388
Chain Sequence
MFPGSVIRKLSHSEEVFAQYEVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGICVIDAELRLDQSVSLLHLQLILREGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAVTTGDPGPITPQPTPLSMEAVLAQRGIRKAERFMSVMYAYPGLPQAVPVTRLWLSKQQTSDLMAFGREHRLSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGPNTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTMRTPPGLEIEDIKGQFYCSISVPLDLYSCAVYAGQLIIEHHGHIAEPGKSLEAIRSLLCTVPSEYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Polyketide synthase associated protein 5
publication title Crystal Structure of PapA5, a Phthiocerol Dimycocerosyl Transferase from Mycobacterium tuberculosis
pubmed doi rcsb
source organism Mycobacterium tuberculosis
molecule tags Ligase
total genus 105
structure length 388
sequence length 418
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16911 PapA_C Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1q9jA01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1q9jA02
1EAEA 1SCZA 5DU9A 1XL8A 1DPDA 2II5A 1CIAA 1L5AA 5KJVA 2E1UA 3CLAA 1NOCB 4KECA 4JN3A 1C4TA 3U9BA 3U9FA 2CLAA 1EABA 2XR7A 2E1TA 1DPBA 1PD5A 4HVMA 1QCAA 3B2SA 1DPCA 3B30A 4G22A 5FANA 1Q23A 3L60A 4G0BA 4CLAA 4N72A 5KJWA 2II4A 1EACA 2XHGA 1XMDA 2RKTA 2VSQA 1Q9JA 3FOTA 1XL7A 5FALA 4KE4A 5KJTA 2II3A 2BGHA 4G2MA 5KJUA 5DUAA 1CLAA 2I9DA 5T3EA 1EADA 2IHWA 5KJSA 1EAFA 1XMCA 3MAEA 1EAAA 3FP0A 2RKVA 2ZBAA 2JGPA 4JN5A 2E1VA 1E2OA
chains in the Genus database with same CATH superfamily
1L5AA 4EPHA 1NOCB 1C4TA 3U9FA 2CLAA 1DPBA 2FY5A 2RCUA 1QCAA 2H3WA 3B30A 5KJWA 4G0BA 4N72A 3FOTA 2FW3A 5KJUA 2FYOA 1NDFA 3FP0A 1T1UA 3CLAA 4KECA 2XR7A 4HVMA 3B2SA 4G22A 1T7NA 2XHGA 4EP9A 2RKTA 2VSQA 2FY3A 1NM8A 1CLAA 1XMCA 3MAEA 1EAAA 2FY2A 2DEBA 4EYWA 2RKVA 2II5A 1E2OA 1EAEA 1SCZA 1DPDA 1CIAA 2H3PA 4JN3A 1EABA 1PD5A 1DPCA 3L60A 4CLAA 1NDIA 1EACA 1Q9JA 2H4TA 5FALA 2BGHA 4G2MA 2I9DA 1EADA 5KJSA 1T7OA 4JN5A 2E1VA 5DU9A 1XL8A 5KJVA 2E1UA 3U9BA 2E1TA 2H3UA 5FANA 1NDBA 1Q23A 2II4A 1XMDA 1XL7A 5KJTA 4KE4A 2II3A 1Q6XA 5DUAA 5T3EA 1T7QA 2IHWA 1EAFA 2ZBAA 2JGPA 1S5OA 2FY4A
chains in the Genus database with same CATH topology
1L5AA 4EPHA 1NOCB 1C4TA 3U9FA 2CLAA 1DPBA 2FY5A 2RCUA 1QCAA 3B30A 2H3WA 5KJWA 4G0BA 4N72A 3FOTA 2FW3A 5KJUA 2FYOA 1NDFA 3FP0A 1T1UA 3CLAA 4KECA 2XR7A 4HVMA 3B2SA 4G22A 1T7NA 2XHGA 4EP9A 2RKTA 2VSQA 2FY3A 1NM8A 1CLAA 1XMCA 3MAEA 1EAAA 2FY2A 2DEBA 4EYWA 2RKVA 2II5A 1E2OA 1EAEA 1SCZA 1DPDA 1CIAA 4JN3A 2H3PA 1EABA 1PD5A 1DPCA 3L60A 4CLAA 1NDIA 1EACA 1Q9JA 2H4TA 5FALA 2BGHA 4G2MA 2I9DA 1EADA 5KJSA 1T7OA 4JN5A 2E1VA 5DU9A 1XL8A 5KJVA 2E1UA 3U9BA 2E1TA 2H3UA 5FANA 1NDBA 1Q23A 2II4A 1XMDA 1XL7A 5KJTA 4KE4A 2II3A 5DUAA 5T3EA 1Q6XA 1T7QA 2IHWA 1EAFA 2ZBAA 2JGPA 1S5OA 2FY4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EAE A;  1SCZ A;  5DU9 A;  1XL8 A;  1DPD A;  2II5 A;  1CIA A;  1L5A A;  5KJV A;  2E1U A;  3CLA A;  1NOC B;  4KEC A;  4JN3 A;  1C4T A;  3U9B A;  3U9F A;  2CLA A;  1EAB A;  2XR7 A;  2E1T A;  1DPB A;  1PD5 A;  4HVM A;  1QCA A;  3B2S A;  1DPC A;  3B30 A;  4G22 A;  5FAN A;  1Q23 A;  3L60 A;  4G0B A;  4CLA A;  4N72 A;  5KJW A;  2II4 A;  1EAC A;  2XHG A;  1XMD A;  2RKT A;  2VSQ A;  1Q9J A;  3FOT A;  1XL7 A;  5FAL A;  4KE4 A;  5KJT A;  2II3 A;  2BGH A;  4G2M A;  5KJU A;  5DUA A;  1CLA A;  2I9D A;  5T3E A;  1EAD A;  2IHW A;  5KJS A;  1EAF A;  1XMC A;  3MAE A;  1EAA A;  3FP0 A;  2RKV A;  2ZBA A;  2JGP A;  4JN5 A;  2E1V A;  1E2O A; 
#chains in the Genus database with same CATH topology
 1L5A A;  4EPH A;  1NOC B;  1C4T A;  3U9F A;  2CLA A;  1DPB A;  2FY5 A;  2RCU A;  1QCA A;  2H3W A;  3B30 A;  5KJW A;  4G0B A;  4N72 A;  3FOT A;  2FW3 A;  5KJU A;  2FYO A;  1NDF A;  3FP0 A;  1T1U A;  3CLA A;  4KEC A;  2XR7 A;  4HVM A;  3B2S A;  4G22 A;  1T7N A;  2XHG A;  4EP9 A;  2RKT A;  2VSQ A;  2FY3 A;  1NM8 A;  1CLA A;  1XMC A;  3MAE A;  1EAA A;  2FY2 A;  2DEB A;  4EYW A;  2RKV A;  2II5 A;  1E2O A;  1EAE A;  1SCZ A;  1DPD A;  1CIA A;  2H3P A;  4JN3 A;  1EAB A;  1PD5 A;  1DPC A;  3L60 A;  4CLA A;  1NDI A;  1EAC A;  1Q9J A;  2H4T A;  5FAL A;  2BGH A;  4G2M A;  2I9D A;  1EAD A;  5KJS A;  1T7O A;  4JN5 A;  2E1V A;  5DU9 A;  1XL8 A;  5KJV A;  2E1U A;  3U9B A;  2E1T A;  2H3U A;  5FAN A;  1NDB A;  1Q23 A;  2II4 A;  1XMD A;  1XL7 A;  5KJT A;  4KE4 A;  2II3 A;  1Q6X A;  5DUA A;  5T3E A;  1T7Q A;  2IHW A;  1EAF A;  2ZBA A;  2JGP A;  1S5O A;  2FY4 A; 
#chains in the Genus database with same CATH homology
 1L5A A;  4EPH A;  1NOC B;  1C4T A;  3U9F A;  2CLA A;  1DPB A;  2FY5 A;  2RCU A;  1QCA A;  3B30 A;  2H3W A;  5KJW A;  4G0B A;  4N72 A;  3FOT A;  2FW3 A;  5KJU A;  2FYO A;  1NDF A;  3FP0 A;  1T1U A;  3CLA A;  4KEC A;  2XR7 A;  4HVM A;  3B2S A;  4G22 A;  1T7N A;  2XHG A;  4EP9 A;  2RKT A;  2VSQ A;  2FY3 A;  1NM8 A;  1CLA A;  1XMC A;  3MAE A;  1EAA A;  2FY2 A;  2DEB A;  4EYW A;  2RKV A;  2II5 A;  1E2O A;  1EAE A;  1SCZ A;  1DPD A;  1CIA A;  4JN3 A;  2H3P A;  1EAB A;  1PD5 A;  1DPC A;  3L60 A;  4CLA A;  1NDI A;  1EAC A;  1Q9J A;  2H4T A;  5FAL A;  2BGH A;  4G2M A;  2I9D A;  1EAD A;  5KJS A;  1T7O A;  4JN5 A;  2E1V A;  5DU9 A;  1XL8 A;  5KJV A;  2E1U A;  3U9B A;  2E1T A;  2H3U A;  5FAN A;  1NDB A;  1Q23 A;  2II4 A;  1XMD A;  1XL7 A;  5KJT A;  4KE4 A;  2II3 A;  5DUA A;  5T3E A;  1Q6X A;  1T7Q A;  2IHW A;  1EAF A;  2ZBA A;  2JGP A;  1S5O A;  2FY4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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