1Q9JA

Structure of polyketide synthase associated protein 5 from mycobacterium tuberculosis
Total Genus 105
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
105
sequence length
418
structure length
388
Chain Sequence
MFPGSVIRKLSHSEEVFAQYEVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGICVIDAELRLDQSVSLLHLQLILREGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAVTTGDPGPITPQPTPLSMEAVLAQRGIRKAERFMSVMYAYPGLPQAVPVTRLWLSKQQTSDLMAFGREHRLSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGPNTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPGLPPLVFCTDATSFPTMRTPPGLEIEDIKGQFYCSISVPLDLYSCAVYAGQLIIEHHGHIAEPGKSLEAIRSLLCTVPSEYG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase
molecule keywords Polyketide synthase associated protein 5
publication title Crystal Structure of PapA5, a Phthiocerol Dimycocerosyl Transferase from Mycobacterium tuberculosis
pubmed doi rcsb
source organism Mycobacterium tuberculosis
total genus 105
structure length 388
sequence length 418
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16911 PapA_C Phthiocerol/phthiodiolone dimycocerosyl transferase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1q9jA01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1q9jA02
1EACA 5KJSA 1SCZA 4KE4A 2RKTA 3L60A 5FALA 4G0BA 1XMDA 2II3A 2ZBAA 4G22A 4JN5A 1Q9JA 2IHWA 4KECA 1CLAA 1C4TA 4JN3A 1EAFA 4HVMA 2XR7A 3B2SA 1L5AA 1NOCB 2E1TA 2XHGA 3FOTA 2CLAA 1DPCA 2JGPA 4N72A 2BGHA 5T3EA 1QCAA 5KJTA 1EAEA 1Q23A 5KJVA 2VSQA 1CIAA 1EADA 2E1VA 2II5A 1XMCA 3U9BA 1EAAA 1XL7A 2E1UA 2RKVA 3B30A 5DU9A 4CLAA 1DPDA 1EABA 5KJUA 1XL8A 3MAEA 5KJWA 2I9DA 1E2OA 3FP0A 2II4A 5FANA 1DPBA 3U9FA 5DUAA 1PD5A 3CLAA 4G2MA
chains in the Genus database with same CATH superfamily
2RKTA 2II3A 4JN5A 1Q9JA 4KECA 1CLAA 2FYOA 2XR7A 3B2SA 2CLAA 1DPCA 2VSQA 2DEBA 2E1VA 1XMCA 3U9BA 1EAAA 1XL7A 1Q6XA 2RKVA 3B30A 5KJUA 1EABA 2FW3A 3FP0A 1T7QA 3U9FA 5DUAA 2H3UA 1EACA 5FALA 2IHWA 1C4TA 1EAFA 4N72A 1NM8A 5KJTA 1EADA 1NDIA 1XL8A 2FY5A 2FY2A 5KJSA 4KE4A 4G0BA 1NDFA 1XMDA 4G22A 4JN3A 4HVMA 1L5AA 1NOCB 2E1TA 2XHGA 3FOTA 2FY4A 2H3PA 1EAEA 2RCUA 5KJVA 1CIAA 2II5A 4CLAA 4EPHA 1DPDA 4EYWA 4EP9A 2I9DA 1E2OA 2II4A 5FANA 1DPBA 1S5OA 4G2MA 1SCZA 3L60A 2ZBAA 1T1UA 2H4TA 2JGPA 1NDBA 2BGHA 5T3EA 1QCAA 1Q23A 2E1UA 5DU9A 2FY3A 3MAEA 1T7NA 2H3WA 5KJWA 1T7OA 1PD5A 3CLAA
chains in the Genus database with same CATH topology
2RKTA 2II3A 4JN5A 1Q9JA 4KECA 1CLAA 2FYOA 2XR7A 3B2SA 2CLAA 1DPCA 2VSQA 2DEBA 2E1VA 1XMCA 3U9BA 1EAAA 1XL7A 1Q6XA 2RKVA 3B30A 5KJUA 1EABA 2FW3A 3FP0A 1T7QA 3U9FA 5DUAA 2H3UA 1EACA 5FALA 2IHWA 1C4TA 1EAFA 4N72A 1NM8A 5KJTA 1EADA 1NDIA 1XL8A 2FY5A 2FY2A 5KJSA 4KE4A 4G0BA 1NDFA 1XMDA 4G22A 4JN3A 4HVMA 1L5AA 1NOCB 2E1TA 2XHGA 3FOTA 2FY4A 2H3PA 1EAEA 5KJVA 2RCUA 1CIAA 2II5A 4CLAA 4EPHA 1DPDA 4EYWA 4EP9A 2I9DA 1E2OA 2II4A 5FANA 1DPBA 1S5OA 4G2MA 1SCZA 3L60A 2ZBAA 1T1UA 2H4TA 2JGPA 1NDBA 2BGHA 5T3EA 1QCAA 1Q23A 2E1UA 5DU9A 2FY3A 3MAEA 1T7NA 5KJWA 2H3WA 1T7OA 1PD5A 3CLAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EAC A;  5KJS A;  1SCZ A;  4KE4 A;  2RKT A;  3L60 A;  5FAL A;  4G0B A;  1XMD A;  2II3 A;  2ZBA A;  4G22 A;  4JN5 A;  1Q9J A;  2IHW A;  4KEC A;  1CLA A;  1C4T A;  4JN3 A;  1EAF A;  4HVM A;  2XR7 A;  3B2S A;  1L5A A;  1NOC B;  2E1T A;  2XHG A;  3FOT A;  2CLA A;  1DPC A;  2JGP A;  4N72 A;  2BGH A;  5T3E A;  1QCA A;  5KJT A;  1EAE A;  1Q23 A;  5KJV A;  2VSQ A;  1CIA A;  1EAD A;  2E1V A;  2II5 A;  1XMC A;  3U9B A;  1EAA A;  1XL7 A;  2E1U A;  2RKV A;  3B30 A;  5DU9 A;  4CLA A;  1DPD A;  1EAB A;  5KJU A;  1XL8 A;  3MAE A;  5KJW A;  2I9D A;  1E2O A;  3FP0 A;  2II4 A;  5FAN A;  1DPB A;  3U9F A;  5DUA A;  1PD5 A;  3CLA A;  4G2M A; 
#chains in the Genus database with same CATH topology
 2RKT A;  2II3 A;  4JN5 A;  1Q9J A;  4KEC A;  1CLA A;  2FYO A;  2XR7 A;  3B2S A;  2CLA A;  1DPC A;  2VSQ A;  2DEB A;  2E1V A;  1XMC A;  3U9B A;  1EAA A;  1XL7 A;  1Q6X A;  2RKV A;  3B30 A;  5KJU A;  1EAB A;  2FW3 A;  3FP0 A;  1T7Q A;  3U9F A;  5DUA A;  2H3U A;  1EAC A;  5FAL A;  2IHW A;  1C4T A;  1EAF A;  4N72 A;  1NM8 A;  5KJT A;  1EAD A;  1NDI A;  1XL8 A;  2FY5 A;  2FY2 A;  5KJS A;  4KE4 A;  4G0B A;  1NDF A;  1XMD A;  4G22 A;  4JN3 A;  4HVM A;  1L5A A;  1NOC B;  2E1T A;  2XHG A;  3FOT A;  2FY4 A;  2H3P A;  1EAE A;  2RCU A;  5KJV A;  1CIA A;  2II5 A;  4CLA A;  4EPH A;  1DPD A;  4EYW A;  4EP9 A;  2I9D A;  1E2O A;  2II4 A;  5FAN A;  1DPB A;  1S5O A;  4G2M A;  1SCZ A;  3L60 A;  2ZBA A;  1T1U A;  2H4T A;  2JGP A;  1NDB A;  2BGH A;  5T3E A;  1QCA A;  1Q23 A;  2E1U A;  5DU9 A;  2FY3 A;  3MAE A;  1T7N A;  2H3W A;  5KJW A;  1T7O A;  1PD5 A;  3CLA A; 
#chains in the Genus database with same CATH homology
 2RKT A;  2II3 A;  4JN5 A;  1Q9J A;  4KEC A;  1CLA A;  2FYO A;  2XR7 A;  3B2S A;  2CLA A;  1DPC A;  2VSQ A;  2DEB A;  2E1V A;  1XMC A;  3U9B A;  1EAA A;  1XL7 A;  1Q6X A;  2RKV A;  3B30 A;  5KJU A;  1EAB A;  2FW3 A;  3FP0 A;  1T7Q A;  3U9F A;  5DUA A;  2H3U A;  1EAC A;  5FAL A;  2IHW A;  1C4T A;  1EAF A;  4N72 A;  1NM8 A;  5KJT A;  1EAD A;  1NDI A;  1XL8 A;  2FY5 A;  2FY2 A;  5KJS A;  4KE4 A;  4G0B A;  1NDF A;  1XMD A;  4G22 A;  4JN3 A;  4HVM A;  1L5A A;  1NOC B;  2E1T A;  2XHG A;  3FOT A;  2FY4 A;  2H3P A;  1EAE A;  5KJV A;  2RCU A;  1CIA A;  2II5 A;  4CLA A;  4EPH A;  1DPD A;  4EYW A;  4EP9 A;  2I9D A;  1E2O A;  2II4 A;  5FAN A;  1DPB A;  1S5O A;  4G2M A;  1SCZ A;  3L60 A;  2ZBA A;  1T1U A;  2H4T A;  2JGP A;  1NDB A;  2BGH A;  5T3E A;  1QCA A;  1Q23 A;  2E1U A;  5DU9 A;  2FY3 A;  3MAE A;  1T7N A;  5KJW A;  2H3W A;  1T7O A;  1PD5 A;  3CLA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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