1NDIA

Carnitine acetyltransferase in complex with coa
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
596
structure length
596
Chain Sequence
AHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Carnitine Acetyltransferase
publication title Crystal Structure of Carnitine Acetyltransferase and Implications for the Catalytic Mechanism and Fatty Acid Transport
pubmed doi rcsb
source organism Mus musculus
molecule tags Transferase
total genus 186
structure length 596
sequence length 596
chains with identical sequence B
ec nomenclature ec 2.3.1.7: Carnitine O-acetyltransferase.
pdb deposition date 2002-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndiA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndiA02
1NM8A 2FW3A 1NDFA 1T7NA 2H4TA 2FY4A 1S5OA 2H3WA 2FYOA 1T1UA 1NDBA 2H3UA 4EYWA 2H3PA 2RCUA 1T7QA 2FY3A 4EPHA 4EP9A 2DEBA 1NDIA 1T7OA 1Q6XA 2FY2A 2FY5A
chains in the Genus database with same CATH superfamily
3B2SA 1EAFA 1NDFA 1T7NA 2H4TA 2ZBAA 1S5OA 2VSQA 1PD5A 2H3UA 1DPBA 2FY3A 5KJVA 5KJWA 3FOTA 2E1UA 2E1TA 5KJSA 1Q9JA 1CLAA 1C4TA 1DPDA 2JGPA 3L60A 1EAEA 1XMDA 4CLAA 1E2OA 1DPCA 2I9DA 1SCZA 1NOCB 4KECA 1L5AA 5FALA 3U9BA 1XL7A 1QCAA 2IHWA 3CLAA 1EAAA 1Q6XA 3B30A 2FY5A 2II4A 1EADA 1EABA 2II3A 5KJTA 1NDBA 4G0BA 2RCUA 1T7QA 4EPHA 2E1VA 1CIAA 4G2MA 4EP9A 2BGHA 5DUAA 4JN5A 1XL8A 2DEBA 2RKTA 5FANA 5DU9A 5KJUA 2XHGA 3FP0A 5T3EA 1NM8A 2FW3A 4JN3A 2FY4A 4G22A 4HVMA 2H3WA 1Q23A 1T1UA 2FYOA 2XR7A 4EYWA 2H3PA 2II5A 2RKVA 4N72A 1EACA 4KE4A 1NDIA 2CLAA 3U9FA 1T7OA 1XMCA 3MAEA 2FY2A
chains in the Genus database with same CATH topology
1NM8A 2FW3A 1NDFA 1T7NA 2H4TA 4JN3A 2FY4A 1S5OA 4HVMA 2H3WA 2VSQA 2FYOA 1T1UA 1NDBA 2H3UA 4EYWA 2H3PA 2RCUA 1T7QA 2FY3A 3FP0A 4EPHA 3FOTA 1L5AA 4EP9A 1Q9JA 5DUAA 4JN5A 2DEBA 2XHGA 1NDIA 1T7OA 1Q6XA 5DU9A 2JGPA 2FY2A 2FY5A 5T3EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NM8 A;  2FW3 A;  1NDF A;  1T7N A;  2H4T A;  2FY4 A;  1S5O A;  2H3W A;  2FYO A;  1T1U A;  1NDB A;  2H3U A;  4EYW A;  2H3P A;  2RCU A;  1T7Q A;  2FY3 A;  4EPH A;  4EP9 A;  2DEB A;  1NDI A;  1T7O A;  1Q6X A;  2FY2 A;  2FY5 A; 
#chains in the Genus database with same CATH topology
 3B2S A;  1EAF A;  1NDF A;  1T7N A;  2H4T A;  2ZBA A;  1S5O A;  2VSQ A;  1PD5 A;  2H3U A;  1DPB A;  2FY3 A;  5KJV A;  5KJW A;  3FOT A;  2E1U A;  2E1T A;  5KJS A;  1Q9J A;  1CLA A;  1C4T A;  1DPD A;  2JGP A;  3L60 A;  1EAE A;  1XMD A;  4CLA A;  1E2O A;  1DPC A;  2I9D A;  1SCZ A;  1NOC B;  4KEC A;  1L5A A;  5FAL A;  3U9B A;  1XL7 A;  1QCA A;  2IHW A;  3CLA A;  1EAA A;  1Q6X A;  3B30 A;  2FY5 A;  2II4 A;  1EAD A;  1EAB A;  2II3 A;  5KJT A;  1NDB A;  4G0B A;  2RCU A;  1T7Q A;  4EPH A;  2E1V A;  1CIA A;  4G2M A;  4EP9 A;  2BGH A;  5DUA A;  4JN5 A;  1XL8 A;  2DEB A;  2RKT A;  5FAN A;  5DU9 A;  5KJU A;  2XHG A;  3FP0 A;  5T3E A;  1NM8 A;  2FW3 A;  4JN3 A;  2FY4 A;  4G22 A;  4HVM A;  2H3W A;  1Q23 A;  1T1U A;  2FYO A;  2XR7 A;  4EYW A;  2H3P A;  2II5 A;  2RKV A;  4N72 A;  1EAC A;  4KE4 A;  1NDI A;  2CLA A;  3U9F A;  1T7O A;  1XMC A;  3MAE A;  2FY2 A; 
#chains in the Genus database with same CATH homology
 1NM8 A;  2FW3 A;  1NDF A;  1T7N A;  2H4T A;  4JN3 A;  2FY4 A;  1S5O A;  4HVM A;  2H3W A;  2VSQ A;  2FYO A;  1T1U A;  1NDB A;  2H3U A;  4EYW A;  2H3P A;  2RCU A;  1T7Q A;  2FY3 A;  3FP0 A;  4EPH A;  3FOT A;  1L5A A;  4EP9 A;  1Q9J A;  5DUA A;  4JN5 A;  2DEB A;  2XHG A;  1NDI A;  1T7O A;  1Q6X A;  5DU9 A;  2JGP A;  2FY2 A;  2FY5 A;  5T3E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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