1NDIA

Carnitine acetyltransferase in complex with coa
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
596
structure length
596
Chain Sequence
AHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQGQLRFAAKLIEGVLDFKSMIDNETLPVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRPPTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRMFHLGRTDTIRSASIDSLAFVKGMGDSTVPEQQKVELLRKAVQAHRAYTDRAIRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVVPDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNHPRAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords Carnitine Acetyltransferase
publication title Crystal Structure of Carnitine Acetyltransferase and Implications for the Catalytic Mechanism and Fatty Acid Transport
pubmed doi rcsb
source organism Mus musculus
total genus 186
structure length 596
sequence length 596
chains with identical sequence B
ec nomenclature ec 2.3.1.7: Carnitine O-acetyltransferase.
pdb deposition date 2002-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00755 Carn_acyltransf Choline/Carnitine o-acyltransferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.40 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndiA01
3.30.559.70 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1ndiA02
1Q6XA 1T7QA 2FY2A 2FY4A 1NDIA 1S5OA 2H3PA 2H4TA 1T1UA 4EPHA 1NDBA 2FY3A 2H3UA 4EP9A 2FYOA 1T7OA 1NM8A 2FY5A 2FW3A 2H3WA 1T7NA 1NDFA 2DEBA 2RCUA 4EYWA
chains in the Genus database with same CATH superfamily
4N72A 1T7QA 1EAFA 2E1TA 4HVMA 4CLAA 2VSQA 5KJUA 1L5AA 1T1UA 4EP9A 2BGHA 1EADA 5FANA 5T3EA 2FW3A 3FOTA 2H3WA 4G0BA 1XMDA 1XL8A 4G2MA 4EYWA 2E1VA 2FY4A 2JGPA 5FALA 2CLAA 2ZBAA 2RKVA 5KJVA 1Q23A 2E1UA 2H3PA 4KE4A 1DPDA 4EPHA 1XL7A 2H3UA 1EACA 1T7OA 5KJSA 4G22A 1DPCA 2XR7A 3B2SA 4KECA 1T7NA 1NDFA 1Q9JA 2II3A 3CLAA 4JN3A 1QCAA 5KJWA 2IHWA 2II4A 1NDIA 5KJTA 1CIAA 1EAAA 2II5A 2H4TA 3U9FA 2FY3A 3B30A 1NM8A 2FY5A 1SCZA 1XMCA 3MAEA 1DPBA 2RCUA 1Q6XA 2FY2A 2XHGA 5DU9A 1S5OA 1PD5A 3U9BA 1EAEA 1NDBA 5DUAA 2FYOA 4JN5A 1EABA 3FP0A 1E2OA 1CLAA 1C4TA 2RKTA 3L60A 1NOCB 2DEBA 2I9DA
chains in the Genus database with same CATH topology
1Q6XA 1T7QA 2FY2A 2FY4A 2JGPA 2XHGA 5DU9A 4HVMA 1NDIA 1S5OA 2VSQA 2H3PA 1L5AA 2H4TA 1T1UA 4EPHA 1NDBA 2FY3A 2H3UA 5DUAA 4EP9A 2FYOA 1T7OA 1NM8A 4JN5A 2FY5A 5T3EA 3FP0A 2FW3A 3FOTA 2H3WA 1T7NA 1NDFA 1Q9JA 4JN3A 2DEBA 2RCUA 4EYWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q6X A;  1T7Q A;  2FY2 A;  2FY4 A;  1NDI A;  1S5O A;  2H3P A;  2H4T A;  1T1U A;  4EPH A;  1NDB A;  2FY3 A;  2H3U A;  4EP9 A;  2FYO A;  1T7O A;  1NM8 A;  2FY5 A;  2FW3 A;  2H3W A;  1T7N A;  1NDF A;  2DEB A;  2RCU A;  4EYW A; 
#chains in the Genus database with same CATH topology
 4N72 A;  1T7Q A;  1EAF A;  2E1T A;  4HVM A;  4CLA A;  2VSQ A;  5KJU A;  1L5A A;  1T1U A;  4EP9 A;  2BGH A;  1EAD A;  5FAN A;  5T3E A;  2FW3 A;  3FOT A;  2H3W A;  4G0B A;  1XMD A;  1XL8 A;  4G2M A;  4EYW A;  2E1V A;  2FY4 A;  2JGP A;  5FAL A;  2CLA A;  2ZBA A;  2RKV A;  5KJV A;  1Q23 A;  2E1U A;  2H3P A;  4KE4 A;  1DPD A;  4EPH A;  1XL7 A;  2H3U A;  1EAC A;  1T7O A;  5KJS A;  4G22 A;  1DPC A;  2XR7 A;  3B2S A;  4KEC A;  1T7N A;  1NDF A;  1Q9J A;  2II3 A;  3CLA A;  4JN3 A;  1QCA A;  5KJW A;  2IHW A;  2II4 A;  1NDI A;  5KJT A;  1CIA A;  1EAA A;  2II5 A;  2H4T A;  3U9F A;  2FY3 A;  3B30 A;  1NM8 A;  2FY5 A;  1SCZ A;  1XMC A;  3MAE A;  1DPB A;  2RCU A;  1Q6X A;  2FY2 A;  2XHG A;  5DU9 A;  1S5O A;  1PD5 A;  3U9B A;  1EAE A;  1NDB A;  5DUA A;  2FYO A;  4JN5 A;  1EAB A;  3FP0 A;  1E2O A;  1CLA A;  1C4T A;  2RKT A;  3L60 A;  1NOC B;  2DEB A;  2I9D A; 
#chains in the Genus database with same CATH homology
 1Q6X A;  1T7Q A;  2FY2 A;  2FY4 A;  2JGP A;  2XHG A;  5DU9 A;  4HVM A;  1NDI A;  1S5O A;  2VSQ A;  2H3P A;  1L5A A;  2H4T A;  1T1U A;  4EPH A;  1NDB A;  2FY3 A;  2H3U A;  5DUA A;  4EP9 A;  2FYO A;  1T7O A;  1NM8 A;  4JN5 A;  2FY5 A;  5T3E A;  3FP0 A;  2FW3 A;  3FOT A;  2H3W A;  1T7N A;  1NDF A;  1Q9J A;  4JN3 A;  2DEB A;  2RCU A;  4EYW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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