2BGHA

Crystal structure of vinorine synthase
Total Genus 116
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
sequence length
418
structure length
413
Chain Sequence
QMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEIVLPNFDLAARHFPPVDNTPSPELVPDENVVMKRFVFDKEKIGALRAQASKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAEWDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYELEPQELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMAEDEMAMLPVELLSLVDSDFSK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords VINORINE SYNTHASE
publication title Crystal Structure of Vinorine Synthase, the First Representative of the Bahd Superfamily.
pubmed doi rcsb
source organism Rauvolfia serpentina
molecule tags Transferase
total genus 116
structure length 413
sequence length 418
chains with identical sequence B
ec nomenclature ec 2.3.1.160: Vinorine synthase.
pdb deposition date 2004-12-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2bghA01
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2bghA02
2E1UA 2JGPA 1DPBA 2XHGA 4CLAA 5FALA 2VSQA 3MAEA 2II3A 3FOTA 3B30A 5KJUA 2CLAA 1EAFA 2II4A 1NOCB 1CLAA 3B2SA 3L60A 2E1VA 4JN5A 4HVMA 1E2OA 2RKTA 4G22A 1EACA 1DPDA 1XL8A 2E1TA 2XR7A 1DPCA 3FP0A 2RKVA 5FANA 1L5AA 2IHWA 3CLAA 3U9BA 5KJTA 2ZBAA 5KJSA 1EADA 4KECA 1C4TA 1EABA 1Q9JA 2I9DA 1QCAA 4G2MA 1PD5A 4JN3A 5KJVA 1CIAA 1XMDA 3U9FA 4G0BA 5DUAA 2BGHA 1EAEA 1EAAA 1XL7A 5KJWA 4N72A 1Q23A 2II5A 4KE4A 5T3EA 5DU9A 1SCZA 1XMCA
chains in the Genus database with same CATH superfamily
1NDFA 2FY2A 4CLAA 1S5OA 2FYOA 1EACA 1DPDA 1XL8A 1L5AA 1DPCA 3FP0A 5FANA 4EYWA 3U9BA 3CLAA 1EABA 4JN3A 1T7QA 1XMDA 1XL7A 2H4TA 2JGPA 5FALA 3B30A 5KJUA 2H3WA 1T7OA 2E1VA 2E1TA 2IHWA 1EADA 4G2MA 2DEBA 5KJVA 4G0BA 2RCUA 5KJWA 1NM8A 2H3UA 2II5A 5DU9A 2XR7A 4N72A 4KE4A 1XMCA 2E1UA 1DPBA 2VSQA 3FOTA 1EAFA 3L60A 1E2OA 2FW3A 2RKTA 4G22A 5KJTA 2H3PA 4KECA 1C4TA 1Q9JA 2I9DA 1QCAA 1T7NA 1CIAA 3U9FA 4EPHA 4EP9A 2BGHA 1EAEA 1EAAA 1T1UA 2FY4A 1SCZA 2FY3A 2XHGA 3MAEA 1NDIA 2II3A 2CLAA 2II4A 1NOCB 1CLAA 3B2SA 4JN5A 2RKVA 5KJSA 2ZBAA 2FY5A 1PD5A 5DUAA 1NDBA 1Q23A 5T3EA 1Q6XA 4HVMA
chains in the Genus database with same CATH topology
2E1UA 2JGPA 1DPBA 2XHGA 4CLAA 5FALA 2VSQA 3MAEA 2II3A 3FOTA 3B30A 5KJUA 2CLAA 1EAFA 2II4A 1NOCB 1CLAA 3B2SA 3L60A 2E1VA 4JN5A 4HVMA 1E2OA 2RKTA 4G22A 1EACA 1DPDA 1XL8A 2E1TA 2XR7A 1DPCA 3FP0A 2RKVA 5FANA 1L5AA 2IHWA 3CLAA 3U9BA 5KJTA 2ZBAA 5KJSA 1EADA 4KECA 1C4TA 1EABA 1Q9JA 2I9DA 1QCAA 4G2MA 1PD5A 4JN3A 5KJVA 1CIAA 1XMDA 3U9FA 4G0BA 5DUAA 2BGHA 1EAEA 1EAAA 1XL7A 5KJWA 4N72A 1Q23A 2II5A 4KE4A 5T3EA 5DU9A 1SCZA 1XMCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E1U A;  2JGP A;  1DPB A;  2XHG A;  4CLA A;  5FAL A;  2VSQ A;  3MAE A;  2II3 A;  3FOT A;  3B30 A;  5KJU A;  2CLA A;  1EAF A;  2II4 A;  1NOC B;  1CLA A;  3B2S A;  3L60 A;  2E1V A;  4JN5 A;  4HVM A;  1E2O A;  2RKT A;  4G22 A;  1EAC A;  1DPD A;  1XL8 A;  2E1T A;  2XR7 A;  1DPC A;  3FP0 A;  2RKV A;  5FAN A;  1L5A A;  2IHW A;  3CLA A;  3U9B A;  5KJT A;  2ZBA A;  5KJS A;  1EAD A;  4KEC A;  1C4T A;  1EAB A;  1Q9J A;  2I9D A;  1QCA A;  4G2M A;  1PD5 A;  4JN3 A;  5KJV A;  1CIA A;  1XMD A;  3U9F A;  4G0B A;  5DUA A;  2BGH A;  1EAE A;  1EAA A;  1XL7 A;  5KJW A;  4N72 A;  1Q23 A;  2II5 A;  4KE4 A;  5T3E A;  5DU9 A;  1SCZ A;  1XMC A; 
#chains in the Genus database with same CATH topology
 1NDF A;  2FY2 A;  4CLA A;  1S5O A;  2FYO A;  1EAC A;  1DPD A;  1XL8 A;  1L5A A;  1DPC A;  3FP0 A;  5FAN A;  4EYW A;  3U9B A;  3CLA A;  1EAB A;  4JN3 A;  1T7Q A;  1XMD A;  1XL7 A;  2H4T A;  2JGP A;  5FAL A;  3B30 A;  5KJU A;  2H3W A;  1T7O A;  2E1V A;  2E1T A;  2IHW A;  1EAD A;  4G2M A;  2DEB A;  5KJV A;  4G0B A;  2RCU A;  5KJW A;  1NM8 A;  2H3U A;  2II5 A;  5DU9 A;  2XR7 A;  4N72 A;  4KE4 A;  1XMC A;  2E1U A;  1DPB A;  2VSQ A;  3FOT A;  1EAF A;  3L60 A;  1E2O A;  2FW3 A;  2RKT A;  4G22 A;  5KJT A;  2H3P A;  4KEC A;  1C4T A;  1Q9J A;  2I9D A;  1QCA A;  1T7N A;  1CIA A;  3U9F A;  4EPH A;  4EP9 A;  2BGH A;  1EAE A;  1EAA A;  1T1U A;  2FY4 A;  1SCZ A;  2FY3 A;  2XHG A;  3MAE A;  1NDI A;  2II3 A;  2CLA A;  2II4 A;  1NOC B;  1CLA A;  3B2S A;  4JN5 A;  2RKV A;  5KJS A;  2ZBA A;  2FY5 A;  1PD5 A;  5DUA A;  1NDB A;  1Q23 A;  5T3E A;  1Q6X A;  4HVM A; 
#chains in the Genus database with same CATH homology
 2E1U A;  2JGP A;  1DPB A;  2XHG A;  4CLA A;  5FAL A;  2VSQ A;  3MAE A;  2II3 A;  3FOT A;  3B30 A;  5KJU A;  2CLA A;  1EAF A;  2II4 A;  1NOC B;  1CLA A;  3B2S A;  3L60 A;  2E1V A;  4JN5 A;  4HVM A;  1E2O A;  2RKT A;  4G22 A;  1EAC A;  1DPD A;  1XL8 A;  2E1T A;  2XR7 A;  1DPC A;  3FP0 A;  2RKV A;  5FAN A;  1L5A A;  2IHW A;  3CLA A;  3U9B A;  5KJT A;  2ZBA A;  5KJS A;  1EAD A;  4KEC A;  1C4T A;  1EAB A;  1Q9J A;  2I9D A;  1QCA A;  4G2M A;  1PD5 A;  4JN3 A;  5KJV A;  1CIA A;  1XMD A;  3U9F A;  4G0B A;  5DUA A;  2BGH A;  1EAE A;  1EAA A;  1XL7 A;  5KJW A;  4N72 A;  1Q23 A;  2II5 A;  4KE4 A;  5T3E A;  5DU9 A;  1SCZ A;  1XMC A; 
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