5T3EA

Crystal structure of a nonribosomal peptide synthetase heterocyclization domain.
Total Genus 149
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
149
sequence length
432
structure length
432
Chain Sequence
SEPFSLTEVQTAYMLGRNPQFELSGISPQTYFEYETELDIARLSRSFQKVIQRHPMLRAVILPEGKQQILRDVPEYEIEVESLVSMPPEKQAARLREERSRMIDHVFPLGQWPLFELKAFQLQEHTYLLCFRYDALLMDGASMNLVGQDLMHYYHQPDAQLPPLSFTFQDYMHIYDDMKRGTEYETAKAYWTNKLPDFPPAPSLLLAKDPAEIGTPNFQSLTTIITKDKWLKLRRLAQDKQVTPSALLCTVYGEVLAFWSNQRRLAINLTVFNRYPVHDEVEQIVGDFTSLILLDMDMDQKQPFFTKVEQTQSTLLDGLEHRHYDGVEFIRDYTRYHQMRPKAVMPIVFTSMLAGAGAFAWEEIGSLRHIHARTPQVYLDNVVIEKNGELLVSWNYVEELFDAEVMESMFTQFVELLDQLVEQGDINPLRIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
molecule keywords Bacillamide synthetase heterocyclization domain
publication title Structural and mutational analysis of the nonribosomal peptide synthetase heterocyclization domain provides insight into catalysis.
pubmed doi rcsb
source organism Thermoactinomyces vulgaris
total genus 149
structure length 432
sequence length 432
chains with identical sequence B
ec nomenclature
pdb deposition date 2016-08-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00668 Condensation Condensation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 5t3eA01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 5t3eA02
5DU9A 1EACA 4G2MA 3L60A 5FANA 5T3EA 2CLAA 2RKVA 5KJTA 1XL8A 4N72A 1DPCA 4HVMA 2II4A 2IHWA 5KJUA 4CLAA 1EABA 5KJSA 1PD5A 2XR7A 2RKTA 2I9DA 4KECA 1SCZA 5DUAA 3U9BA 3U9FA 2E1UA 1CIAA 2BGHA 5KJVA 1QCAA 2II5A 5FALA 1Q23A 1L5AA 4G22A 5KJWA 1DPBA 1NOCB 1XL7A 4G0BA 1EAAA 2E1VA 2II3A 2JGPA 2ZBAA 1EAFA 1Q9JA 1DPDA 3CLAA 2XHGA 3B2SA 1XMDA 3FOTA 2VSQA 3FP0A 1C4TA 3B30A 4KE4A 1CLAA 4JN3A 1XMCA 4JN5A 1E2OA 1EAEA 3MAEA 1EADA 2E1TA
chains in the Genus database with same CATH superfamily
4G2MA 5T3EA 5KJTA 4EYWA 1XL8A 2H3UA 5FALA 1Q23A 1XL7A 2ZBAA 1T7OA 2FYOA 1DPDA 2XHGA 3B2SA 3FOTA 2H3PA 3FP0A 1C4TA 4JN3A 1XMCA 1DPBA 1S5OA 2FY3A 3MAEA 5DU9A 1EACA 1NDIA 3L60A 2CLAA 2FY2A 1DPCA 5KJUA 2II4A 4CLAA 1PD5A 2RKTA 1SCZA 3U9FA 1QCAA 1NM8A 4G0BA 2II3A 2FY4A 2VSQA 3B30A 4KE4A 4JN5A 2E1TA 5FANA 4N72A 2IHWA 1Q6XA 1EABA 2XR7A 5DUAA 2H4TA 1T7QA 2BGHA 2II5A 5KJWA 4G22A 2H3WA 1NOCB 1EAAA 2E1VA 2DEBA 1NDBA 4EPHA 1CLAA 2RKVA 4HVMA 5KJSA 2RCUA 3U9BA 2I9DA 4EP9A 2E1UA 1CIAA 5KJVA 1T7NA 1L5AA 1T1UA 2JGPA 2FW3A 1EAFA 1Q9JA 3CLAA 1XMDA 1NDFA 2FY5A 1E2OA 1EAEA 4KECA 1EADA
chains in the Genus database with same CATH topology
4G2MA 5T3EA 5KJTA 4EYWA 1XL8A 2H3UA 5FALA 1Q23A 1XL7A 2ZBAA 1T7OA 2FYOA 1DPDA 2XHGA 3B2SA 3FOTA 2H3PA 3FP0A 1C4TA 4JN3A 1XMCA 1DPBA 1S5OA 3MAEA 2FY3A 5DU9A 1EACA 1NDIA 3L60A 2CLAA 2FY2A 1DPCA 5KJUA 2II4A 4CLAA 1PD5A 2RKTA 1SCZA 3U9FA 1QCAA 1NM8A 4G0BA 2II3A 2FY4A 2VSQA 3B30A 4KE4A 4JN5A 2E1TA 5FANA 4N72A 2IHWA 1Q6XA 1EABA 2XR7A 5DUAA 2H4TA 1T7QA 2BGHA 2II5A 5KJWA 4G22A 2H3WA 1NOCB 1EAAA 2E1VA 2DEBA 1NDBA 4EPHA 1CLAA 2RKVA 4HVMA 5KJSA 2RCUA 3U9BA 2I9DA 4EP9A 2E1UA 1CIAA 5KJVA 1L5AA 1T7NA 1T1UA 2JGPA 2FW3A 1EAFA 1Q9JA 3CLAA 1XMDA 1NDFA 2FY5A 1E2OA 1EAEA 4KECA 1EADA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DU9 A;  1EAC A;  4G2M A;  3L60 A;  5FAN A;  5T3E A;  2CLA A;  2RKV A;  5KJT A;  1XL8 A;  4N72 A;  1DPC A;  4HVM A;  2II4 A;  2IHW A;  5KJU A;  4CLA A;  1EAB A;  5KJS A;  1PD5 A;  2XR7 A;  2RKT A;  2I9D A;  4KEC A;  1SCZ A;  5DUA A;  3U9B A;  3U9F A;  2E1U A;  1CIA A;  2BGH A;  5KJV A;  1QCA A;  2II5 A;  5FAL A;  1Q23 A;  1L5A A;  4G22 A;  5KJW A;  1DPB A;  1NOC B;  1XL7 A;  4G0B A;  1EAA A;  2E1V A;  2II3 A;  2JGP A;  2ZBA A;  1EAF A;  1Q9J A;  1DPD A;  3CLA A;  2XHG A;  3B2S A;  1XMD A;  3FOT A;  2VSQ A;  3FP0 A;  1C4T A;  3B30 A;  4KE4 A;  1CLA A;  4JN3 A;  1XMC A;  4JN5 A;  1E2O A;  1EAE A;  3MAE A;  1EAD A;  2E1T A; 
#chains in the Genus database with same CATH topology
 4G2M A;  5T3E A;  5KJT A;  4EYW A;  1XL8 A;  2H3U A;  5FAL A;  1Q23 A;  1XL7 A;  2ZBA A;  1T7O A;  2FYO A;  1DPD A;  2XHG A;  3B2S A;  3FOT A;  2H3P A;  3FP0 A;  1C4T A;  4JN3 A;  1XMC A;  1DPB A;  1S5O A;  2FY3 A;  3MAE A;  5DU9 A;  1EAC A;  1NDI A;  3L60 A;  2CLA A;  2FY2 A;  1DPC A;  5KJU A;  2II4 A;  4CLA A;  1PD5 A;  2RKT A;  1SCZ A;  3U9F A;  1QCA A;  1NM8 A;  4G0B A;  2II3 A;  2FY4 A;  2VSQ A;  3B30 A;  4KE4 A;  4JN5 A;  2E1T A;  5FAN A;  4N72 A;  2IHW A;  1Q6X A;  1EAB A;  2XR7 A;  5DUA A;  2H4T A;  1T7Q A;  2BGH A;  2II5 A;  5KJW A;  4G22 A;  2H3W A;  1NOC B;  1EAA A;  2E1V A;  2DEB A;  1NDB A;  4EPH A;  1CLA A;  2RKV A;  4HVM A;  5KJS A;  2RCU A;  3U9B A;  2I9D A;  4EP9 A;  2E1U A;  1CIA A;  5KJV A;  1T7N A;  1L5A A;  1T1U A;  2JGP A;  2FW3 A;  1EAF A;  1Q9J A;  3CLA A;  1XMD A;  1NDF A;  2FY5 A;  1E2O A;  1EAE A;  4KEC A;  1EAD A; 
#chains in the Genus database with same CATH homology
 4G2M A;  5T3E A;  5KJT A;  4EYW A;  1XL8 A;  2H3U A;  5FAL A;  1Q23 A;  1XL7 A;  2ZBA A;  1T7O A;  2FYO A;  1DPD A;  2XHG A;  3B2S A;  3FOT A;  2H3P A;  3FP0 A;  1C4T A;  4JN3 A;  1XMC A;  1DPB A;  1S5O A;  3MAE A;  2FY3 A;  5DU9 A;  1EAC A;  1NDI A;  3L60 A;  2CLA A;  2FY2 A;  1DPC A;  5KJU A;  2II4 A;  4CLA A;  1PD5 A;  2RKT A;  1SCZ A;  3U9F A;  1QCA A;  1NM8 A;  4G0B A;  2II3 A;  2FY4 A;  2VSQ A;  3B30 A;  4KE4 A;  4JN5 A;  2E1T A;  5FAN A;  4N72 A;  2IHW A;  1Q6X A;  1EAB A;  2XR7 A;  5DUA A;  2H4T A;  1T7Q A;  2BGH A;  2II5 A;  5KJW A;  4G22 A;  2H3W A;  1NOC B;  1EAA A;  2E1V A;  2DEB A;  1NDB A;  4EPH A;  1CLA A;  2RKV A;  4HVM A;  5KJS A;  2RCU A;  3U9B A;  2I9D A;  4EP9 A;  2E1U A;  1CIA A;  5KJV A;  1L5A A;  1T7N A;  1T1U A;  2JGP A;  2FW3 A;  1EAF A;  1Q9J A;  3CLA A;  1XMD A;  1NDF A;  2FY5 A;  1E2O A;  1EAE A;  4KEC A;  1EAD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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