1L5AA

Crystal structure of vibh, an nrps condensation enzyme
Total Genus 136
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
424
structure length
424
Chain Sequence
MLLAQKPFWQRHLAYPHINLDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGELYWHPFSPPIDYQDLSIHLEAEPLAWRQIEQDLQRSSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQTPTAAFKPYQSYLEEEAAYLTSHRYWQDKQFWQGYLREAPDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKLANANQIGWPDALVALCALYLESAEPDAPWLWLPFMNRWGSVAANVPGLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLASGSAEGINFTFRGSPQHELCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAEPAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Biosynthetic protein
molecule keywords amide synthase
publication title The structure of VibH represents nonribosomal peptide synthetase condensation, cyclization and epimerization domains.
pubmed rcsb
source organism Vibrio cholerae
total genus 136
structure length 424
sequence length 424
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2002-03-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1l5aA01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1l5aA03
2XR7A 1XMDA 4JN5A 5FANA 1XMCA 1EABA 1NOCB 2ZBAA 5KJSA 4KE4A 1C4TA 3MAEA 2RKVA 5KJWA 3CLAA 1EACA 1DPBA 4G22A 5DU9A 4HVMA 1L5AA 1XL7A 2II5A 3FP0A 5FALA 3B30A 2E1VA 2I9DA 5DUAA 3U9BA 3L60A 2IHWA 2II4A 2VSQA 2E1TA 1EAEA 2XHGA 1QCAA 4CLAA 5T3EA 1DPCA 1EAAA 3FOTA 5KJTA 2RKTA 1PD5A 3U9FA 1SCZA 4JN3A 5KJVA 2BGHA 4G0BA 1Q9JA 1EADA 1XL8A 1CLAA 2II3A 2E1UA 1EAFA 1Q23A 3B2SA 4G2MA 1CIAA 1DPDA 4KECA 5KJUA 4N72A 2JGPA 1E2OA 2CLAA
chains in the Genus database with same CATH superfamily
5KJSA 2FY2A 1EACA 1T7OA 1Q6XA 2E1VA 3L60A 2VSQA 4CLAA 1EAAA 1PD5A 3U9FA 2BGHA 2DEBA 1XL8A 2H3UA 1CLAA 4KECA 1EAFA 2FY3A 2H3PA 4N72A 5KJUA 2CLAA 1NDBA 1NOCB 2ZBAA 1NM8A 3MAEA 1T1UA 3CLAA 2H4TA 2FW3A 1DPBA 4HVMA 5DU9A 2II5A 2II4A 1QCAA 1SCZA 4JN3A 2FY5A 2E1UA 3B2SA 1Q23A 1CIAA 2JGPA 1E2OA 2XR7A 1XMDA 1EABA 4KE4A 1C4TA 1L5AA 1XL7A 1T7NA 2RCUA 2I9DA 5DUAA 3U9BA 2E1TA 2XHGA 1NDIA 5T3EA 2RKTA 1NDFA 4G0BA 1Q9JA 1EADA 1T7QA 2FYOA 2II3A 4G2MA 4JN5A 5FANA 1XMCA 2H3WA 2RKVA 4EYWA 4G22A 4EPHA 3FP0A 5FALA 3B30A 2IHWA 1EAEA 1S5OA 2FY4A 1DPCA 5KJTA 3FOTA 5KJVA 4EP9A 1DPDA 5KJWA
chains in the Genus database with same CATH topology
5KJSA 2FY2A 1EACA 1T7OA 1Q6XA 2E1VA 3L60A 2VSQA 4CLAA 1EAAA 1PD5A 3U9FA 2BGHA 2DEBA 1XL8A 2H3UA 1CLAA 1EAFA 4KECA 2FY3A 2H3PA 4N72A 5KJUA 2CLAA 1NDBA 1NOCB 2ZBAA 1NM8A 3MAEA 3CLAA 1T1UA 2H4TA 2FW3A 1DPBA 4HVMA 5DU9A 2II5A 2II4A 1QCAA 1SCZA 4JN3A 2FY5A 2E1UA 3B2SA 1Q23A 1CIAA 2JGPA 1E2OA 2XR7A 1XMDA 1EABA 4KE4A 1C4TA 1L5AA 1XL7A 1T7NA 2RCUA 2I9DA 5DUAA 3U9BA 2E1TA 2XHGA 5T3EA 1NDIA 2RKTA 1NDFA 4G0BA 1Q9JA 1EADA 1T7QA 2FYOA 2II3A 4G2MA 4JN5A 5FANA 1XMCA 2H3WA 2RKVA 4EYWA 4G22A 4EPHA 3FP0A 5FALA 3B30A 2IHWA 1EAEA 1S5OA 2FY4A 1DPCA 5KJTA 3FOTA 5KJVA 4EP9A 1DPDA 5KJWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XR7 A;  1XMD A;  4JN5 A;  5FAN A;  1XMC A;  1EAB A;  1NOC B;  2ZBA A;  5KJS A;  4KE4 A;  1C4T A;  3MAE A;  2RKV A;  5KJW A;  3CLA A;  1EAC A;  1DPB A;  4G22 A;  5DU9 A;  4HVM A;  1L5A A;  1XL7 A;  2II5 A;  3FP0 A;  5FAL A;  3B30 A;  2E1V A;  2I9D A;  5DUA A;  3U9B A;  3L60 A;  2IHW A;  2II4 A;  2VSQ A;  2E1T A;  1EAE A;  2XHG A;  1QCA A;  4CLA A;  5T3E A;  1DPC A;  1EAA A;  3FOT A;  5KJT A;  2RKT A;  1PD5 A;  3U9F A;  1SCZ A;  4JN3 A;  5KJV A;  2BGH A;  4G0B A;  1Q9J A;  1EAD A;  1XL8 A;  1CLA A;  2II3 A;  2E1U A;  1EAF A;  1Q23 A;  3B2S A;  4G2M A;  1CIA A;  1DPD A;  4KEC A;  5KJU A;  4N72 A;  2JGP A;  1E2O A;  2CLA A; 
#chains in the Genus database with same CATH topology
 5KJS A;  2FY2 A;  1EAC A;  1T7O A;  1Q6X A;  2E1V A;  3L60 A;  2VSQ A;  4CLA A;  1EAA A;  1PD5 A;  3U9F A;  2BGH A;  2DEB A;  1XL8 A;  2H3U A;  1CLA A;  4KEC A;  1EAF A;  2FY3 A;  2H3P A;  4N72 A;  5KJU A;  2CLA A;  1NDB A;  1NOC B;  2ZBA A;  1NM8 A;  3MAE A;  1T1U A;  3CLA A;  2H4T A;  2FW3 A;  1DPB A;  4HVM A;  5DU9 A;  2II5 A;  2II4 A;  1QCA A;  1SCZ A;  4JN3 A;  2FY5 A;  2E1U A;  3B2S A;  1Q23 A;  1CIA A;  2JGP A;  1E2O A;  2XR7 A;  1XMD A;  1EAB A;  4KE4 A;  1C4T A;  1L5A A;  1XL7 A;  1T7N A;  2RCU A;  2I9D A;  5DUA A;  3U9B A;  2E1T A;  2XHG A;  1NDI A;  5T3E A;  2RKT A;  1NDF A;  4G0B A;  1Q9J A;  1EAD A;  1T7Q A;  2FYO A;  2II3 A;  4G2M A;  4JN5 A;  5FAN A;  1XMC A;  2H3W A;  2RKV A;  4EYW A;  4G22 A;  4EPH A;  3FP0 A;  5FAL A;  3B30 A;  2IHW A;  1EAE A;  1S5O A;  2FY4 A;  1DPC A;  5KJT A;  3FOT A;  5KJV A;  4EP9 A;  1DPD A;  5KJW A; 
#chains in the Genus database with same CATH homology
 5KJS A;  2FY2 A;  1EAC A;  1T7O A;  1Q6X A;  2E1V A;  3L60 A;  2VSQ A;  4CLA A;  1EAA A;  1PD5 A;  3U9F A;  2BGH A;  2DEB A;  1XL8 A;  2H3U A;  1CLA A;  1EAF A;  4KEC A;  2FY3 A;  2H3P A;  4N72 A;  5KJU A;  2CLA A;  1NDB A;  1NOC B;  2ZBA A;  1NM8 A;  3MAE A;  3CLA A;  1T1U A;  2H4T A;  2FW3 A;  1DPB A;  4HVM A;  5DU9 A;  2II5 A;  2II4 A;  1QCA A;  1SCZ A;  4JN3 A;  2FY5 A;  2E1U A;  3B2S A;  1Q23 A;  1CIA A;  2JGP A;  1E2O A;  2XR7 A;  1XMD A;  1EAB A;  4KE4 A;  1C4T A;  1L5A A;  1XL7 A;  1T7N A;  2RCU A;  2I9D A;  5DUA A;  3U9B A;  2E1T A;  2XHG A;  5T3E A;  1NDI A;  2RKT A;  1NDF A;  4G0B A;  1Q9J A;  1EAD A;  1T7Q A;  2FYO A;  2II3 A;  4G2M A;  4JN5 A;  5FAN A;  1XMC A;  2H3W A;  2RKV A;  4EYW A;  4G22 A;  4EPH A;  3FP0 A;  5FAL A;  3B30 A;  2IHW A;  1EAE A;  1S5O A;  2FY4 A;  1DPC A;  5KJT A;  3FOT A;  5KJV A;  4EP9 A;  1DPD A;  5KJW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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