1L5AA

Crystal structure of vibh, an nrps condensation enzyme
Total Genus 136
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
136
sequence length
424
structure length
424
Chain Sequence
MLLAQKPFWQRHLAYPHINLDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFRARFSAQGELYWHPFSPPIDYQDLSIHLEAEPLAWRQIEQDLQRSSTLIDAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMMLFEQRLSQHYQSLLSGQTPTAAFKPYQSYLEEEAAYLTSHRYWQDKQFWQGYLREAPDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKLANANQIGWPDALVALCALYLESAEPDAPWLWLPFMNRWGSVAANVPGLMVNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLASGSAEGINFTFRGSPQHELCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAEPAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Biosynthetic protein
molecule keywords amide synthase
publication title The structure of VibH represents nonribosomal peptide synthetase condensation, cyclization and epimerization domains.
pubmed rcsb
source organism Vibrio cholerae
total genus 136
structure length 424
sequence length 424
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2002-03-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1l5aA01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 1l5aA03
3FP0A 3B2SA 4G2MA 1XL7A 1PD5A 4KE4A 5KJSA 1EABA 2CLAA 1Q23A 2ZBAA 5KJWA 4JN3A 1XMCA 1C4TA 4CLAA 2VSQA 2JGPA 1XL8A 3B30A 2II3A 3FOTA 1L5AA 5KJUA 5DU9A 1DPDA 3MAEA 2IHWA 1Q9JA 1QCAA 3U9BA 2I9DA 4N72A 2II4A 4G0BA 4HVMA 1XMDA 1CIAA 5T3EA 1EAEA 5DUAA 2E1UA 2BGHA 3U9FA 2II5A 5FALA 2RKTA 5KJVA 2XHGA 5FANA 1EACA 1NOCB 4KECA 3CLAA 1EADA 1DPCA 4G22A 1CLAA 2E1VA 5KJTA 2XR7A 1EAFA 4JN5A 3L60A 2E1TA 1SCZA 1EAAA 1E2OA 1DPBA 2RKVA
chains in the Genus database with same CATH superfamily
3FP0A 4G2MA 1XL7A 1T7NA 5KJSA 1NM8A 2JGPA 1XL8A 1Q9JA 1QCAA 4N72A 1XMDA 5DUAA 2FY5A 3CLAA 1EADA 1CLAA 2DEBA 1T1UA 1EAFA 2FW3A 4JN5A 2FY3A 2ZBAA 4JN3A 1C4TA 1L5AA 5DU9A 1DPDA 3U9BA 2RCUA 4EP9A 5T3EA 1EAEA 2E1UA 3U9FA 2FYOA 1NDIA 2XR7A 1NDFA 1SCZA 1EAAA 2RKVA 2H3PA 5KJWA 2H4TA 4CLAA 2FY2A 2II3A 5KJUA 4HVMA 4G0BA 1CIAA 2BGHA 2II5A 1Q6XA 2FY4A 1NOCB 1T7QA 4KECA 4G22A 1DPCA 2E1VA 2I9DA 2E1TA 1E2OA 5KJTA 3B2SA 4KE4A 1PD5A 1EABA 2CLAA 1Q23A 1NDBA 2H3WA 1XMCA 2H3UA 2VSQA 3B30A 3FOTA 3MAEA 2IHWA 1T7OA 2II4A 5FALA 5KJVA 2RKTA 2XHGA 5FANA 1EACA 1S5OA 4EYWA 3L60A 1DPBA 4EPHA
chains in the Genus database with same CATH topology
3FP0A 4G2MA 1XL7A 5KJSA 1T7NA 1NM8A 2JGPA 1XL8A 1Q9JA 1QCAA 4N72A 1XMDA 5DUAA 3CLAA 2FY5A 1EADA 1CLAA 2DEBA 1T1UA 1EAFA 2FW3A 4JN5A 2FY3A 2ZBAA 4JN3A 1C4TA 1L5AA 5DU9A 1DPDA 3U9BA 2RCUA 4EP9A 5T3EA 1EAEA 2E1UA 3U9FA 2FYOA 1NDIA 2XR7A 1NDFA 1SCZA 1EAAA 2RKVA 2H3PA 5KJWA 2H4TA 4CLAA 2FY2A 2II3A 5KJUA 4HVMA 4G0BA 1CIAA 2BGHA 2II5A 1Q6XA 2FY4A 1NOCB 1T7QA 4KECA 4G22A 1DPCA 2E1VA 2I9DA 2E1TA 1E2OA 5KJTA 3B2SA 4KE4A 1PD5A 1EABA 2CLAA 1Q23A 1NDBA 2H3WA 1XMCA 2H3UA 2VSQA 3B30A 3FOTA 3MAEA 2IHWA 1T7OA 2II4A 5FALA 5KJVA 2RKTA 2XHGA 5FANA 1EACA 1S5OA 4EYWA 3L60A 1DPBA 4EPHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FP0 A;  3B2S A;  4G2M A;  1XL7 A;  1PD5 A;  4KE4 A;  5KJS A;  1EAB A;  2CLA A;  1Q23 A;  2ZBA A;  5KJW A;  4JN3 A;  1XMC A;  1C4T A;  4CLA A;  2VSQ A;  2JGP A;  1XL8 A;  3B30 A;  2II3 A;  3FOT A;  1L5A A;  5KJU A;  5DU9 A;  1DPD A;  3MAE A;  2IHW A;  1Q9J A;  1QCA A;  3U9B A;  2I9D A;  4N72 A;  2II4 A;  4G0B A;  4HVM A;  1XMD A;  1CIA A;  5T3E A;  1EAE A;  5DUA A;  2E1U A;  2BGH A;  3U9F A;  2II5 A;  5FAL A;  2RKT A;  5KJV A;  2XHG A;  5FAN A;  1EAC A;  1NOC B;  4KEC A;  3CLA A;  1EAD A;  1DPC A;  4G22 A;  1CLA A;  2E1V A;  5KJT A;  2XR7 A;  1EAF A;  4JN5 A;  3L60 A;  2E1T A;  1SCZ A;  1EAA A;  1E2O A;  1DPB A;  2RKV A; 
#chains in the Genus database with same CATH topology
 3FP0 A;  4G2M A;  1XL7 A;  1T7N A;  5KJS A;  1NM8 A;  2JGP A;  1XL8 A;  1Q9J A;  1QCA A;  4N72 A;  1XMD A;  5DUA A;  2FY5 A;  3CLA A;  1EAD A;  1CLA A;  2DEB A;  1T1U A;  1EAF A;  2FW3 A;  4JN5 A;  2FY3 A;  2ZBA A;  4JN3 A;  1C4T A;  1L5A A;  5DU9 A;  1DPD A;  3U9B A;  2RCU A;  4EP9 A;  5T3E A;  1EAE A;  2E1U A;  3U9F A;  2FYO A;  1NDI A;  2XR7 A;  1NDF A;  1SCZ A;  1EAA A;  2RKV A;  2H3P A;  5KJW A;  2H4T A;  4CLA A;  2FY2 A;  2II3 A;  5KJU A;  4HVM A;  4G0B A;  1CIA A;  2BGH A;  2II5 A;  1Q6X A;  2FY4 A;  1NOC B;  1T7Q A;  4KEC A;  4G22 A;  1DPC A;  2E1V A;  2I9D A;  2E1T A;  1E2O A;  5KJT A;  3B2S A;  4KE4 A;  1PD5 A;  1EAB A;  2CLA A;  1Q23 A;  1NDB A;  2H3W A;  1XMC A;  2H3U A;  2VSQ A;  3B30 A;  3FOT A;  3MAE A;  2IHW A;  1T7O A;  2II4 A;  5FAL A;  5KJV A;  2RKT A;  2XHG A;  5FAN A;  1EAC A;  1S5O A;  4EYW A;  3L60 A;  1DPB A;  4EPH A; 
#chains in the Genus database with same CATH homology
 3FP0 A;  4G2M A;  1XL7 A;  5KJS A;  1T7N A;  1NM8 A;  2JGP A;  1XL8 A;  1Q9J A;  1QCA A;  4N72 A;  1XMD A;  5DUA A;  3CLA A;  2FY5 A;  1EAD A;  1CLA A;  2DEB A;  1T1U A;  1EAF A;  2FW3 A;  4JN5 A;  2FY3 A;  2ZBA A;  4JN3 A;  1C4T A;  1L5A A;  5DU9 A;  1DPD A;  3U9B A;  2RCU A;  4EP9 A;  5T3E A;  1EAE A;  2E1U A;  3U9F A;  2FYO A;  1NDI A;  2XR7 A;  1NDF A;  1SCZ A;  1EAA A;  2RKV A;  2H3P A;  5KJW A;  2H4T A;  4CLA A;  2FY2 A;  2II3 A;  5KJU A;  4HVM A;  4G0B A;  1CIA A;  2BGH A;  2II5 A;  1Q6X A;  2FY4 A;  1NOC B;  1T7Q A;  4KEC A;  4G22 A;  1DPC A;  2E1V A;  2I9D A;  2E1T A;  1E2O A;  5KJT A;  3B2S A;  4KE4 A;  1PD5 A;  1EAB A;  2CLA A;  1Q23 A;  1NDB A;  2H3W A;  1XMC A;  2H3U A;  2VSQ A;  3B30 A;  3FOT A;  3MAE A;  2IHW A;  1T7O A;  2II4 A;  5FAL A;  5KJV A;  2RKT A;  2XHG A;  5FAN A;  1EAC A;  1S5O A;  4EYW A;  3L60 A;  1DPB A;  4EPH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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