1DPDA

Crystallographic and enzymatic investigations on the role of ser558, his610 and asn614 in the catalytic mechanism of azotobacter vinelandii dihydrolipoamide acetyltransferase (e2p)
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
243
structure length
243
Chain Sequence
IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTIASLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Dihydrolipoamide acetyltransferase
molecule keywords DIHYDROLIPOYL-TRANSACETYLASE
publication title Crystallographic and enzymatic investigations on the role of Ser558, His610, and Asn614 in the catalytic mechanism of Azotobacter vinelandii dihydrolipoamide acetyltransferase (E2p).
pubmed doi rcsb
source organism Azotobacter vinelandii
total genus 67
structure length 243
sequence length 243
ec nomenclature ec 2.3.1.12: Dihydrolipoyllysine-residue acetyltransferase.
pdb deposition date 1995-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1dpdA00
3U9FA 4G22A 4N72A 1EADA 1Q9JA 1C4TA 1SCZA 2E1VA 5FALA 1Q23A 1QCAA 5T3EA 5DUAA 2VSQA 2RKVA 1EABA 1DPDA 4JN5A 4KE4A 1E2OA 1DPBA 1XL8A 3U9BA 1NOCB 2II4A 5KJVA 5KJSA 2ZBAA 1EACA 2I9DA 2E1UA 4G2MA 1XMDA 1DPCA 3FOTA 2CLAA 1CLAA 5KJUA 1XL7A 4G0BA 1CIAA 2II3A 1XMCA 2RKTA 1L5AA 3FP0A 5KJWA 4CLAA 2BGHA 2IHWA 3B30A 2E1TA 3CLAA 2JGPA 4HVMA 1EAEA 1PD5A 3B2SA 4KECA 5KJTA 1EAAA 3L60A 5DU9A 5FANA 1EAFA 4JN3A 2XR7A 2XHGA 2II5A 3MAEA
chains in the Genus database with same CATH superfamily
1EADA 2E1VA 2H3WA 4EYWA 1E2OA 3U9BA 1NOCB 2II4A 5KJVA 5KJSA 2ZBAA 2FW3A 2E1UA 2FY2A 1Q6XA 3CLAA 1PD5A 5KJTA 4EP9A 1NDFA 2XR7A 2FY3A 4G22A 1SCZA 1C4TA 1NM8A 1EABA 1DPDA 1T7NA 1XL8A 1S5OA 1T1UA 1EACA 2CLAA 1CLAA 2DEBA 5KJUA 1XL7A 4G0BA 1NDIA 1T7OA 2E1TA 4HVMA 1EAAA 5FANA 1EAFA 4JN3A 2XHGA 2II5A 2H4TA 3U9FA 1Q9JA 1Q23A 1QCAA 5T3EA 5DUAA 2VSQA 2RKVA 4JN5A 4KE4A 2FY5A 1XMDA 3FOTA 1CIAA 2II3A 3FP0A 2IHWA 4KECA 5DU9A 3L60A 2FYOA 4N72A 3MAEA 5FALA 1NDBA 1DPBA 2H3UA 2RCUA 2I9DA 1T7QA 2FY4A 4G2MA 1DPCA 2H3PA 1XMCA 2RKTA 1L5AA 5KJWA 4EPHA 4CLAA 2BGHA 3B30A 2JGPA 1EAEA 3B2SA
chains in the Genus database with same CATH topology
3U9FA 4G22A 4N72A 1EADA 1Q9JA 1C4TA 1SCZA 2E1VA 5FALA 1Q23A 1QCAA 5T3EA 5DUAA 2VSQA 2RKVA 1EABA 1DPDA 4JN5A 4KE4A 1E2OA 1DPBA 1XL8A 3U9BA 1NOCB 2II4A 5KJVA 5KJSA 2ZBAA 1EACA 2I9DA 2E1UA 4G2MA 1XMDA 1DPCA 3FOTA 2CLAA 1CLAA 5KJUA 1XL7A 4G0BA 1CIAA 2II3A 1XMCA 2RKTA 1L5AA 3FP0A 5KJWA 4CLAA 2BGHA 2IHWA 3B30A 2E1TA 3CLAA 2JGPA 4HVMA 1EAEA 1PD5A 3B2SA 4KECA 5KJTA 1EAAA 3L60A 5DU9A 5FANA 1EAFA 4JN3A 2XR7A 2XHGA 2II5A 3MAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U9F A;  4G22 A;  4N72 A;  1EAD A;  1Q9J A;  1C4T A;  1SCZ A;  2E1V A;  5FAL A;  1Q23 A;  1QCA A;  5T3E A;  5DUA A;  2VSQ A;  2RKV A;  1EAB A;  1DPD A;  4JN5 A;  4KE4 A;  1E2O A;  1DPB A;  1XL8 A;  3U9B A;  1NOC B;  2II4 A;  5KJV A;  5KJS A;  2ZBA A;  1EAC A;  2I9D A;  2E1U A;  4G2M A;  1XMD A;  1DPC A;  3FOT A;  2CLA A;  1CLA A;  5KJU A;  1XL7 A;  4G0B A;  1CIA A;  2II3 A;  1XMC A;  2RKT A;  1L5A A;  3FP0 A;  5KJW A;  4CLA A;  2BGH A;  2IHW A;  3B30 A;  2E1T A;  3CLA A;  2JGP A;  4HVM A;  1EAE A;  1PD5 A;  3B2S A;  4KEC A;  5KJT A;  1EAA A;  3L60 A;  5DU9 A;  5FAN A;  1EAF A;  4JN3 A;  2XR7 A;  2XHG A;  2II5 A;  3MAE A; 
#chains in the Genus database with same CATH topology
 1EAD A;  2E1V A;  2H3W A;  4EYW A;  1E2O A;  3U9B A;  1NOC B;  2II4 A;  5KJV A;  5KJS A;  2ZBA A;  2FW3 A;  2E1U A;  2FY2 A;  1Q6X A;  3CLA A;  1PD5 A;  5KJT A;  4EP9 A;  1NDF A;  2XR7 A;  2FY3 A;  4G22 A;  1SCZ A;  1C4T A;  1NM8 A;  1EAB A;  1DPD A;  1T7N A;  1XL8 A;  1S5O A;  1T1U A;  1EAC A;  2CLA A;  1CLA A;  2DEB A;  5KJU A;  1XL7 A;  4G0B A;  1NDI A;  1T7O A;  2E1T A;  4HVM A;  1EAA A;  5FAN A;  1EAF A;  4JN3 A;  2XHG A;  2II5 A;  2H4T A;  3U9F A;  1Q9J A;  1Q23 A;  1QCA A;  5T3E A;  5DUA A;  2VSQ A;  2RKV A;  4JN5 A;  4KE4 A;  2FY5 A;  1XMD A;  3FOT A;  1CIA A;  2II3 A;  3FP0 A;  2IHW A;  4KEC A;  5DU9 A;  3L60 A;  2FYO A;  4N72 A;  3MAE A;  5FAL A;  1NDB A;  1DPB A;  2H3U A;  2RCU A;  2I9D A;  1T7Q A;  2FY4 A;  4G2M A;  1DPC A;  2H3P A;  1XMC A;  2RKT A;  1L5A A;  5KJW A;  4EPH A;  4CLA A;  2BGH A;  3B30 A;  2JGP A;  1EAE A;  3B2S A; 
#chains in the Genus database with same CATH homology
 3U9F A;  4G22 A;  4N72 A;  1EAD A;  1Q9J A;  1C4T A;  1SCZ A;  2E1V A;  5FAL A;  1Q23 A;  1QCA A;  5T3E A;  5DUA A;  2VSQ A;  2RKV A;  1EAB A;  1DPD A;  4JN5 A;  4KE4 A;  1E2O A;  1DPB A;  1XL8 A;  3U9B A;  1NOC B;  2II4 A;  5KJV A;  5KJS A;  2ZBA A;  1EAC A;  2I9D A;  2E1U A;  4G2M A;  1XMD A;  1DPC A;  3FOT A;  2CLA A;  1CLA A;  5KJU A;  1XL7 A;  4G0B A;  1CIA A;  2II3 A;  1XMC A;  2RKT A;  1L5A A;  3FP0 A;  5KJW A;  4CLA A;  2BGH A;  2IHW A;  3B30 A;  2E1T A;  3CLA A;  2JGP A;  4HVM A;  1EAE A;  1PD5 A;  3B2S A;  4KEC A;  5KJT A;  1EAA A;  3L60 A;  5DU9 A;  5FAN A;  1EAF A;  4JN3 A;  2XR7 A;  2XHG A;  2II5 A;  3MAE A; 
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