2XHGA

Crystal structure of the epimerization domain from the initiation module of tyrocidine biosynthesis
Total Genus 161
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
161
sequence length
457
structure length
457
Chain Sequence
KSDQGIIAGNVPLTPIQKWFFGKNFTNTGHWNQSSVLYRPEGFDPKVIQSVMDKIIEHHDALRMVYQHENGNVVQHNRGLGGQLYDFFSYNLTAQPDVQQAIEAETQRLHSSMNLQEGPLVKVALFQTLHGDHLFLAIHHLVVDGISWRILFEDLATGYAQALAGQAISLPEKTDSFQSWSQWLQEYANEADLLSEIPYWESLESQAKNVSLPKDYEVTDCKQKSVRNMRIRLHPEETEQLLKHANQAYQTEINDLLLAALGLAFAEWSKLAQIVIHLEGHGREDIIEQANVARTVGWFTSQYPVLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYDILKHVTLPENRGSLSFRVQPEVTFNYLGQFDADMRTELFTRSPYSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSSEQYREESIQQLSQSYQKHLLAIIAHCLQSHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords TYROCIDINE SYNTHETASE A
publication title Structure of the Epimerization Domain of Tyrocidine Synthetase A
pubmed doi rcsb
source organism Brevibacillus brevis
molecule tags Isomerase
total genus 161
structure length 457
sequence length 457
ec nomenclature
pdb deposition date 2010-06-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00668 Condensation Condensation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2xhgA01
3.30.559.30 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol Acetyltransferase 2xhgA02
1XL7A 2CLAA 2II5A 2E1VA 4JN3A 1DPBA 3U9BA 5FALA 1XMDA 2E1UA 5KJWA 1QCAA 3B30A 4CLAA 2JGPA 1EADA 5DUAA 5KJTA 5KJVA 1Q9JA 1EAEA 3U9FA 3L60A 5KJUA 4KE4A 1XMCA 3FOTA 4G0BA 4G22A 3MAEA 1EAFA 1DPCA 1XL8A 4JN5A 4HVMA 5T3EA 1C4TA 1E2OA 2RKVA 3CLAA 2II3A 2VSQA 4N72A 2XHGA 5FANA 1CLAA 1NOCB 3FP0A 1EAAA 2ZBAA 1PD5A 2RKTA 5DU9A 1SCZA 1EACA 1EABA 2BGHA 4KECA 2II4A 1L5AA 5KJSA 2I9DA 1DPDA 1Q23A 2XR7A 3B2SA 1CIAA 2E1TA 2IHWA 4G2MA
chains in the Genus database with same CATH superfamily
2CLAA 4JN3A 1XMDA 4EYWA 2JGPA 1T7NA 2FY2A 3L60A 1E2OA 2II3A 4N72A 2FY4A 1PD5A 2RKTA 1T7QA 1L5AA 5KJSA 2E1TA 1DPBA 1S5OA 4EPHA 2E1UA 1QCAA 2FY5A 5DUAA 5KJVA 4KE4A 3MAEA 1EAFA 1XL8A 4HVMA 1C4TA 2RKVA 2H3WA 2VSQA 1NDFA 1CLAA 1NOCB 1EAAA 1EACA 1EABA 2FW3A 2XR7A 2E1VA 3U9BA 5KJWA 3B30A 1NDBA 1EADA 1Q9JA 3U9FA 3FOTA 4G0BA 1DPCA 3CLAA 2FY3A 5FANA 2XHGA 2ZBAA 5DU9A 1SCZA 2H3PA 2RCUA 4KECA 2II4A 1Q6XA 2I9DA 1DPDA 1NDIA 2H4TA 1CIAA 1NM8A 2FYOA 4G2MA 1XL7A 2II5A 5FALA 4CLAA 1T7OA 5KJTA 1EAEA 5KJUA 1XMCA 4G22A 4JN5A 5T3EA 1T1UA 3FP0A 2H3UA 2BGHA 2DEBA 4EP9A 1Q23A 3B2SA 2IHWA
chains in the Genus database with same CATH topology
2CLAA 4JN3A 1XMDA 4EYWA 2JGPA 1T7NA 2FY2A 3L60A 1E2OA 2II3A 4N72A 2FY4A 1PD5A 2RKTA 1T7QA 1L5AA 5KJSA 2E1TA 1DPBA 1S5OA 4EPHA 2E1UA 1QCAA 2FY5A 5DUAA 5KJVA 4KE4A 3MAEA 1EAFA 1XL8A 4HVMA 1C4TA 2RKVA 2H3WA 2VSQA 1NDFA 1CLAA 1NOCB 1EAAA 1EACA 1EABA 2FW3A 2XR7A 2E1VA 3U9BA 5KJWA 3B30A 1NDBA 1EADA 1Q9JA 3U9FA 3FOTA 4G0BA 1DPCA 3CLAA 2FY3A 5FANA 2XHGA 2ZBAA 5DU9A 1SCZA 2H3PA 2RCUA 4KECA 2II4A 1Q6XA 2I9DA 1DPDA 1NDIA 2H4TA 1CIAA 1NM8A 2FYOA 4G2MA 1XL7A 2II5A 5FALA 4CLAA 1T7OA 5KJTA 1EAEA 5KJUA 1XMCA 4G22A 4JN5A 5T3EA 1T1UA 3FP0A 2H3UA 2BGHA 2DEBA 4EP9A 1Q23A 3B2SA 2IHWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XL7 A;  2CLA A;  2II5 A;  2E1V A;  4JN3 A;  1DPB A;  3U9B A;  5FAL A;  1XMD A;  2E1U A;  5KJW A;  1QCA A;  3B30 A;  4CLA A;  2JGP A;  1EAD A;  5DUA A;  5KJT A;  5KJV A;  1Q9J A;  1EAE A;  3U9F A;  3L60 A;  5KJU A;  4KE4 A;  1XMC A;  3FOT A;  4G0B A;  4G22 A;  3MAE A;  1EAF A;  1DPC A;  1XL8 A;  4JN5 A;  4HVM A;  5T3E A;  1C4T A;  1E2O A;  2RKV A;  3CLA A;  2II3 A;  2VSQ A;  4N72 A;  2XHG A;  5FAN A;  1CLA A;  1NOC B;  3FP0 A;  1EAA A;  2ZBA A;  1PD5 A;  2RKT A;  5DU9 A;  1SCZ A;  1EAC A;  1EAB A;  2BGH A;  4KEC A;  2II4 A;  1L5A A;  5KJS A;  2I9D A;  1DPD A;  1Q23 A;  2XR7 A;  3B2S A;  1CIA A;  2E1T A;  2IHW A;  4G2M A; 
#chains in the Genus database with same CATH topology
 2CLA A;  4JN3 A;  1XMD A;  4EYW A;  2JGP A;  1T7N A;  2FY2 A;  3L60 A;  1E2O A;  2II3 A;  4N72 A;  2FY4 A;  1PD5 A;  2RKT A;  1T7Q A;  1L5A A;  5KJS A;  2E1T A;  1DPB A;  1S5O A;  4EPH A;  2E1U A;  1QCA A;  2FY5 A;  5DUA A;  5KJV A;  4KE4 A;  3MAE A;  1EAF A;  1XL8 A;  4HVM A;  1C4T A;  2RKV A;  2H3W A;  2VSQ A;  1NDF A;  1CLA A;  1NOC B;  1EAA A;  1EAC A;  1EAB A;  2FW3 A;  2XR7 A;  2E1V A;  3U9B A;  5KJW A;  3B30 A;  1NDB A;  1EAD A;  1Q9J A;  3U9F A;  3FOT A;  4G0B A;  1DPC A;  3CLA A;  2FY3 A;  5FAN A;  2XHG A;  2ZBA A;  5DU9 A;  1SCZ A;  2H3P A;  2RCU A;  4KEC A;  2II4 A;  1Q6X A;  2I9D A;  1DPD A;  1NDI A;  2H4T A;  1CIA A;  1NM8 A;  2FYO A;  4G2M A;  1XL7 A;  2II5 A;  5FAL A;  4CLA A;  1T7O A;  5KJT A;  1EAE A;  5KJU A;  1XMC A;  4G22 A;  4JN5 A;  5T3E A;  1T1U A;  3FP0 A;  2H3U A;  2BGH A;  2DEB A;  4EP9 A;  1Q23 A;  3B2S A;  2IHW A; 
#chains in the Genus database with same CATH homology
 2CLA A;  4JN3 A;  1XMD A;  4EYW A;  2JGP A;  1T7N A;  2FY2 A;  3L60 A;  1E2O A;  2II3 A;  4N72 A;  2FY4 A;  1PD5 A;  2RKT A;  1T7Q A;  1L5A A;  5KJS A;  2E1T A;  1DPB A;  1S5O A;  4EPH A;  2E1U A;  1QCA A;  2FY5 A;  5DUA A;  5KJV A;  4KE4 A;  3MAE A;  1EAF A;  1XL8 A;  4HVM A;  1C4T A;  2RKV A;  2H3W A;  2VSQ A;  1NDF A;  1CLA A;  1NOC B;  1EAA A;  1EAC A;  1EAB A;  2FW3 A;  2XR7 A;  2E1V A;  3U9B A;  5KJW A;  3B30 A;  1NDB A;  1EAD A;  1Q9J A;  3U9F A;  3FOT A;  4G0B A;  1DPC A;  3CLA A;  2FY3 A;  5FAN A;  2XHG A;  2ZBA A;  5DU9 A;  1SCZ A;  2H3P A;  2RCU A;  4KEC A;  2II4 A;  1Q6X A;  2I9D A;  1DPD A;  1NDI A;  2H4T A;  1CIA A;  1NM8 A;  2FYO A;  4G2M A;  1XL7 A;  2II5 A;  5FAL A;  4CLA A;  1T7O A;  5KJT A;  1EAE A;  5KJU A;  1XMC A;  4G22 A;  4JN5 A;  5T3E A;  1T1U A;  3FP0 A;  2H3U A;  2BGH A;  2DEB A;  4EP9 A;  1Q23 A;  3B2S A;  2IHW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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