3L60A

Crystal structure of branched-chain alpha-keto acid dehydrogenase subunit e2 from mycobacterium tuberculosis
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
229
structure length
229
Chain Sequence
b'PDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVSAAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE
publication title Crystal Structure of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 from Mycobacterium Tuberculosis
rcsb
source organism Mycobacterium tuberculosis
molecule tags Oxidoreductase
total genus 69
structure length 229
sequence length 229
ec nomenclature ec 2.3.1.168: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase.
pdb deposition date 2009-12-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 3l60A01
1EAAA 2II3A 1DPBA 1EAEA 2RKTA 1C4TA 4G0BA 5DU9A 5FANA 3U9BA 5KJWA 5KJVA 3B2SA 1NOCB 3B30A 2IHWA 1EABA 4G2MA 4N72A 5KJTA 1CLAA 1DPDA 1CIAA 2XHGA 5FALA 4KECA 2RKVA 3FP0A 2I9DA 1EAFA 1EADA 1QCAA 4JN3A 2BGHA 2XR7A 3CLAA 5KJUA 3U9FA 1EACA 5DUAA 5T3EA 1XL8A 3L60A 4CLAA 1L5AA 5KJSA 2E1TA 2VSQA 2II4A 1SCZA 1Q23A 3FOTA 4G22A 1XMDA 4KE4A 1XMCA 2II5A 2ZBAA 1DPCA 1XL7A 2E1UA 3MAEA 1PD5A 1Q9JA 4JN5A 2CLAA 2JGPA 1E2OA 4HVMA 2E1VA
chains in the Genus database with same CATH superfamily
1DPBA 1EAEA 2H4TA 4G0BA 5DU9A 1NOCB 2FY3A 2IHWA 1CLAA 1EAFA 2FY5A 3CLAA 1EACA 5DUAA 1XL8A 2FYOA 1SCZA 3FOTA 2II5A 1NM8A 2H3WA 2JGPA 1E2OA 2RKTA 5FANA 5KJVA 3B2SA 1S5OA 4G2MA 1CIAA 1T7OA 4KECA 1T1UA 1EADA 5T3EA 3L60A 5KJSA 4EYWA 1T7QA 2E1TA 4G22A 4KE4A 3MAEA 1XL7A 2E1UA 2CLAA 1EAAA 2FW3A 5KJWA 3B30A 2FY2A 2H3PA 1DPDA 4EP9A 5FALA 2RKVA 3FP0A 2I9DA 1NDFA 2H3UA 4JN3A 1QCAA 1T7NA 2BGHA 2XR7A 5KJUA 4CLAA 1L5AA 1NDBA 2VSQA 1XMCA 1DPCA 1Q9JA 4EPHA 4HVMA 2II3A 1NDIA 1C4TA 3U9BA 2FY4A 2DEBA 1EABA 4N72A 5KJTA 2XHGA 1Q6XA 2RCUA 3U9FA 2II4A 1Q23A 1XMDA 4JN5A 2ZBAA 1PD5A 2E1VA
chains in the Genus database with same CATH topology
1EAAA 2II3A 1DPBA 1EAEA 2RKTA 1C4TA 4G0BA 5DU9A 5FANA 3U9BA 5KJWA 5KJVA 3B2SA 1NOCB 3B30A 2IHWA 1EABA 4G2MA 4N72A 5KJTA 1CLAA 1DPDA 1CIAA 2XHGA 5FALA 4KECA 2RKVA 3FP0A 2I9DA 1EAFA 1EADA 1QCAA 4JN3A 2BGHA 2XR7A 3CLAA 5KJUA 3U9FA 1EACA 5DUAA 5T3EA 1XL8A 3L60A 4CLAA 1L5AA 5KJSA 2E1TA 2VSQA 2II4A 1SCZA 1Q23A 3FOTA 4G22A 1XMDA 4KE4A 1XMCA 2II5A 2ZBAA 1DPCA 1XL7A 2E1UA 3MAEA 1PD5A 1Q9JA 4JN5A 2CLAA 2JGPA 1E2OA 4HVMA 2E1VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EAA A;  2II3 A;  1DPB A;  1EAE A;  2RKT A;  1C4T A;  4G0B A;  5DU9 A;  5FAN A;  3U9B A;  5KJW A;  5KJV A;  3B2S A;  1NOC B;  3B30 A;  2IHW A;  1EAB A;  4G2M A;  4N72 A;  5KJT A;  1CLA A;  1DPD A;  1CIA A;  2XHG A;  5FAL A;  4KEC A;  2RKV A;  3FP0 A;  2I9D A;  1EAF A;  1EAD A;  1QCA A;  4JN3 A;  2BGH A;  2XR7 A;  3CLA A;  5KJU A;  3U9F A;  1EAC A;  5DUA A;  5T3E A;  1XL8 A;  3L60 A;  4CLA A;  1L5A A;  5KJS A;  2E1T A;  2VSQ A;  2II4 A;  1SCZ A;  1Q23 A;  3FOT A;  4G22 A;  1XMD A;  4KE4 A;  1XMC A;  2II5 A;  2ZBA A;  1DPC A;  1XL7 A;  2E1U A;  3MAE A;  1PD5 A;  1Q9J A;  4JN5 A;  2CLA A;  2JGP A;  1E2O A;  4HVM A;  2E1V A; 
#chains in the Genus database with same CATH topology
 1DPB A;  1EAE A;  2H4T A;  4G0B A;  5DU9 A;  1NOC B;  2FY3 A;  2IHW A;  1CLA A;  1EAF A;  2FY5 A;  3CLA A;  1EAC A;  5DUA A;  1XL8 A;  2FYO A;  1SCZ A;  3FOT A;  2II5 A;  1NM8 A;  2H3W A;  2JGP A;  1E2O A;  2RKT A;  5FAN A;  5KJV A;  3B2S A;  1S5O A;  4G2M A;  1CIA A;  1T7O A;  4KEC A;  1T1U A;  1EAD A;  5T3E A;  3L60 A;  5KJS A;  4EYW A;  1T7Q A;  2E1T A;  4G22 A;  4KE4 A;  3MAE A;  1XL7 A;  2E1U A;  2CLA A;  1EAA A;  2FW3 A;  5KJW A;  3B30 A;  2FY2 A;  2H3P A;  1DPD A;  4EP9 A;  5FAL A;  2RKV A;  3FP0 A;  2I9D A;  1NDF A;  2H3U A;  4JN3 A;  1QCA A;  1T7N A;  2BGH A;  2XR7 A;  5KJU A;  4CLA A;  1L5A A;  1NDB A;  2VSQ A;  1XMC A;  1DPC A;  1Q9J A;  4EPH A;  4HVM A;  2II3 A;  1NDI A;  1C4T A;  3U9B A;  2FY4 A;  2DEB A;  1EAB A;  4N72 A;  5KJT A;  2XHG A;  1Q6X A;  2RCU A;  3U9F A;  2II4 A;  1Q23 A;  1XMD A;  4JN5 A;  2ZBA A;  1PD5 A;  2E1V A; 
#chains in the Genus database with same CATH homology
 1EAA A;  2II3 A;  1DPB A;  1EAE A;  2RKT A;  1C4T A;  4G0B A;  5DU9 A;  5FAN A;  3U9B A;  5KJW A;  5KJV A;  3B2S A;  1NOC B;  3B30 A;  2IHW A;  1EAB A;  4G2M A;  4N72 A;  5KJT A;  1CLA A;  1DPD A;  1CIA A;  2XHG A;  5FAL A;  4KEC A;  2RKV A;  3FP0 A;  2I9D A;  1EAF A;  1EAD A;  1QCA A;  4JN3 A;  2BGH A;  2XR7 A;  3CLA A;  5KJU A;  3U9F A;  1EAC A;  5DUA A;  5T3E A;  1XL8 A;  3L60 A;  4CLA A;  1L5A A;  5KJS A;  2E1T A;  2VSQ A;  2II4 A;  1SCZ A;  1Q23 A;  3FOT A;  4G22 A;  1XMD A;  4KE4 A;  1XMC A;  2II5 A;  2ZBA A;  1DPC A;  1XL7 A;  2E1U A;  3MAE A;  1PD5 A;  1Q9J A;  4JN5 A;  2CLA A;  2JGP A;  1E2O A;  4HVM A;  2E1V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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