3L60A

Crystal structure of branched-chain alpha-keto acid dehydrogenase subunit e2 from mycobacterium tuberculosis
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
229
structure length
229
Chain Sequence
PDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVSAAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETALLDL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE
publication title Crystal Structure of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 from Mycobacterium Tuberculosis
rcsb
source organism Mycobacterium tuberculosis
total genus 69
structure length 229
sequence length 229
ec nomenclature ec 2.3.1.168: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase.
pdb deposition date 2009-12-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 3l60A01
1EACA 4KE4A 1DPDA 1DPBA 1XMCA 2XHGA 5DU9A 1XL7A 5DUAA 2JGPA 1CLAA 1Q23A 1SCZA 2I9DA 4JN5A 1XMDA 3CLAA 1C4TA 1QCAA 1PD5A 2BGHA 3L60A 5FALA 5KJTA 1XL8A 3U9BA 4G22A 5KJWA 2RKTA 1EAAA 2ZBAA 1NOCB 2E1TA 1E2OA 2II3A 4G2MA 4CLAA 1EADA 1DPCA 1EABA 2RKVA 5KJUA 2II5A 4G0BA 3MAEA 4JN3A 3FP0A 1L5AA 1EAEA 2CLAA 2E1VA 2II4A 3B30A 2E1UA 4KECA 2IHWA 2VSQA 1CIAA 5KJSA 1Q9JA 1EAFA 4N72A 3U9FA 5FANA 5KJVA 5T3EA 4HVMA 3B2SA 3FOTA 2XR7A
chains in the Genus database with same CATH superfamily
4EPHA 2RCUA 5DU9A 5DUAA 1Q23A 1SCZA 1XMDA 3CLAA 4G22A 4G2MA 2FYOA 2E1TA 1EADA 1EABA 2H4TA 2H3PA 1Q9JA 1EAFA 5FANA 5KJVA 4HVMA 4N72A 3FOTA 1EACA 4KE4A 1DPDA 1DPBA 1Q6XA 4EP9A 2XHGA 4EYWA 1CLAA 1PD5A 5KJTA 2H3WA 4CLAA 5KJUA 2II5A 4G0BA 4JN3A 1T7NA 1NDIA 2CLAA 3B30A 4KECA 2VSQA 3U9FA 3B2SA 2XR7A 1T1UA 1NDBA 1XL7A 2JGPA 2FY3A 1S5OA 5FALA 3L60A 1XL8A 3U9BA 5KJWA 2RKTA 1EAAA 1NOCB 2II3A 1DPCA 3MAEA 1L5AA 1EAEA 2E1UA 2DEBA 2IHWA 1CIAA 5KJSA 1XMCA 1NDFA 2H3UA 1T7QA 4JN5A 2I9DA 1C4TA 1QCAA 2BGHA 1NM8A 2ZBAA 1E2OA 2RKVA 2FY4A 3FP0A 2FY2A 2E1VA 2II4A 1T7OA 2FW3A 2FY5A 5T3EA
chains in the Genus database with same CATH topology
1EACA 4KE4A 1DPDA 1DPBA 1XMCA 2XHGA 5DU9A 1XL7A 5DUAA 2JGPA 1CLAA 1Q23A 1SCZA 2I9DA 4JN5A 1XMDA 3CLAA 1C4TA 1QCAA 1PD5A 2BGHA 3L60A 5FALA 5KJTA 1XL8A 3U9BA 4G22A 5KJWA 2RKTA 1EAAA 2ZBAA 1NOCB 2E1TA 1E2OA 2II3A 4G2MA 4CLAA 1EADA 1DPCA 1EABA 2RKVA 5KJUA 2II5A 4G0BA 3MAEA 4JN3A 3FP0A 1L5AA 1EAEA 2CLAA 2E1VA 2II4A 3B30A 2E1UA 4KECA 2IHWA 2VSQA 1CIAA 5KJSA 1Q9JA 1EAFA 4N72A 3U9FA 5FANA 5KJVA 5T3EA 4HVMA 3B2SA 3FOTA 2XR7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EAC A;  4KE4 A;  1DPD A;  1DPB A;  1XMC A;  2XHG A;  5DU9 A;  1XL7 A;  5DUA A;  2JGP A;  1CLA A;  1Q23 A;  1SCZ A;  2I9D A;  4JN5 A;  1XMD A;  3CLA A;  1C4T A;  1QCA A;  1PD5 A;  2BGH A;  3L60 A;  5FAL A;  5KJT A;  1XL8 A;  3U9B A;  4G22 A;  5KJW A;  2RKT A;  1EAA A;  2ZBA A;  1NOC B;  2E1T A;  1E2O A;  2II3 A;  4G2M A;  4CLA A;  1EAD A;  1DPC A;  1EAB A;  2RKV A;  5KJU A;  2II5 A;  4G0B A;  3MAE A;  4JN3 A;  3FP0 A;  1L5A A;  1EAE A;  2CLA A;  2E1V A;  2II4 A;  3B30 A;  2E1U A;  4KEC A;  2IHW A;  2VSQ A;  1CIA A;  5KJS A;  1Q9J A;  1EAF A;  4N72 A;  3U9F A;  5FAN A;  5KJV A;  5T3E A;  4HVM A;  3B2S A;  3FOT A;  2XR7 A; 
#chains in the Genus database with same CATH topology
 4EPH A;  2RCU A;  5DU9 A;  5DUA A;  1Q23 A;  1SCZ A;  1XMD A;  3CLA A;  4G22 A;  4G2M A;  2FYO A;  2E1T A;  1EAD A;  1EAB A;  2H4T A;  2H3P A;  1Q9J A;  1EAF A;  5FAN A;  5KJV A;  4HVM A;  4N72 A;  3FOT A;  1EAC A;  4KE4 A;  1DPD A;  1DPB A;  1Q6X A;  4EP9 A;  2XHG A;  4EYW A;  1CLA A;  1PD5 A;  5KJT A;  2H3W A;  4CLA A;  5KJU A;  2II5 A;  4G0B A;  4JN3 A;  1T7N A;  1NDI A;  2CLA A;  3B30 A;  4KEC A;  2VSQ A;  3U9F A;  3B2S A;  2XR7 A;  1T1U A;  1NDB A;  1XL7 A;  2JGP A;  2FY3 A;  1S5O A;  5FAL A;  3L60 A;  1XL8 A;  3U9B A;  5KJW A;  2RKT A;  1EAA A;  1NOC B;  2II3 A;  1DPC A;  3MAE A;  1L5A A;  1EAE A;  2E1U A;  2DEB A;  2IHW A;  1CIA A;  5KJS A;  1XMC A;  1NDF A;  2H3U A;  1T7Q A;  4JN5 A;  2I9D A;  1C4T A;  1QCA A;  2BGH A;  1NM8 A;  2ZBA A;  1E2O A;  2RKV A;  2FY4 A;  3FP0 A;  2FY2 A;  2E1V A;  2II4 A;  1T7O A;  2FW3 A;  2FY5 A;  5T3E A; 
#chains in the Genus database with same CATH homology
 1EAC A;  4KE4 A;  1DPD A;  1DPB A;  1XMC A;  2XHG A;  5DU9 A;  1XL7 A;  5DUA A;  2JGP A;  1CLA A;  1Q23 A;  1SCZ A;  2I9D A;  4JN5 A;  1XMD A;  3CLA A;  1C4T A;  1QCA A;  1PD5 A;  2BGH A;  3L60 A;  5FAL A;  5KJT A;  1XL8 A;  3U9B A;  4G22 A;  5KJW A;  2RKT A;  1EAA A;  2ZBA A;  1NOC B;  2E1T A;  1E2O A;  2II3 A;  4G2M A;  4CLA A;  1EAD A;  1DPC A;  1EAB A;  2RKV A;  5KJU A;  2II5 A;  4G0B A;  3MAE A;  4JN3 A;  3FP0 A;  1L5A A;  1EAE A;  2CLA A;  2E1V A;  2II4 A;  3B30 A;  2E1U A;  4KEC A;  2IHW A;  2VSQ A;  1CIA A;  5KJS A;  1Q9J A;  1EAF A;  4N72 A;  3U9F A;  5FAN A;  5KJV A;  5T3E A;  4HVM A;  3B2S A;  3FOT A;  2XR7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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