2II4A

Crystal structure of a cubic core of the dihydrolipoamide acyltransferase (e2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (bckdc), coenzyme a-bound form
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
234
structure length
234
Chain Sequence
GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Lipoamide acyltransferase component of branched-chain alpha-
publication title A synchronized substrate-gating mechanism revealed by cubic-core structure of the bovine branched-chain alpha-ketoacid dehydrogenase complex.
pubmed doi rcsb
source organism Bos taurus
total genus 66
structure length 234
sequence length 234
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 2.3.1.168: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase.
pdb deposition date 2006-09-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2ii4A01
1EAAA 2II4A 5KJUA 1CIAA 1XL8A 1EACA 3U9BA 5DUAA 4JN3A 2VSQA 1Q9JA 3FP0A 5T3EA 4CLAA 1EABA 4G2MA 1L5AA 3CLAA 1QCAA 1EAEA 5KJVA 3FOTA 5FANA 1XMDA 5DU9A 5KJTA 4G22A 1CLAA 5KJWA 1NOCB 2E1VA 4HVMA 3B2SA 3MAEA 1EADA 1E2OA 1C4TA 1XL7A 2RKVA 4G0BA 4KE4A 3U9FA 2RKTA 1PD5A 2XR7A 4KECA 1DPBA 2CLAA 2JGPA 1EAFA 2BGHA 3B30A 2ZBAA 2I9DA 2IHWA 5FALA 5KJSA 1SCZA 1Q23A 2XHGA 1DPDA 2II3A 4N72A 2E1UA 1XMCA 4JN5A 3L60A 2E1TA 1DPCA 2II5A
chains in the Genus database with same CATH superfamily
1CIAA 1EACA 5DUAA 4CLAA 3FP0A 2H3PA 1EABA 1QCAA 2H3UA 1T1UA 2FYOA 1E2OA 1C4TA 2RKTA 2XR7A 2CLAA 2JGPA 5KJSA 2XHGA 2E1UA 1NDIA 2FW3A 1L5AA 1EAAA 4EPHA 1XL8A 2H3WA 3CLAA 3FOTA 1XMDA 5KJWA 1NOCB 4HVMA 3MAEA 1XL7A 2FY4A 2H4TA 1NDFA 2FY2A 1DPBA 4KECA 1SCZA 2FY3A 1XMCA 4JN5A 1T7QA 1DPCA 2II5A 2II4A 2VSQA 4G2MA 5KJVA 1EAEA 1S5OA 1T7OA 5KJTA 2E1VA 3B2SA 2RKVA 2BGHA 2IHWA 1T7NA 1Q23A 1DPDA 2II3A 1NM8A 3L60A 2E1TA 2DEBA 4EP9A 5KJUA 3U9BA 4JN3A 1Q9JA 5T3EA 4EYWA 5FANA 5DU9A 4G22A 1CLAA 1EADA 4KE4A 4G0BA 3U9FA 1PD5A 1EAFA 2RCUA 1Q6XA 3B30A 1NDBA 2ZBAA 5FALA 2FY5A 4N72A 2I9DA
chains in the Genus database with same CATH topology
1EAAA 2II4A 5KJUA 1CIAA 1XL8A 1EACA 3U9BA 5DUAA 4JN3A 2VSQA 1Q9JA 3FP0A 5T3EA 4CLAA 1EABA 4G2MA 1L5AA 3CLAA 1QCAA 1EAEA 5KJVA 3FOTA 5FANA 1XMDA 5DU9A 5KJTA 4G22A 1CLAA 5KJWA 1NOCB 2E1VA 4HVMA 3B2SA 3MAEA 1EADA 1E2OA 1C4TA 1XL7A 2RKVA 4G0BA 4KE4A 3U9FA 2RKTA 1PD5A 2XR7A 4KECA 1DPBA 2CLAA 2JGPA 1EAFA 2BGHA 3B30A 2ZBAA 2I9DA 2IHWA 5FALA 5KJSA 1SCZA 1Q23A 2XHGA 1DPDA 2II3A 4N72A 2E1UA 1XMCA 4JN5A 3L60A 2E1TA 1DPCA 2II5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EAA A;  2II4 A;  5KJU A;  1CIA A;  1XL8 A;  1EAC A;  3U9B A;  5DUA A;  4JN3 A;  2VSQ A;  1Q9J A;  3FP0 A;  5T3E A;  4CLA A;  1EAB A;  4G2M A;  1L5A A;  3CLA A;  1QCA A;  1EAE A;  5KJV A;  3FOT A;  5FAN A;  1XMD A;  5DU9 A;  5KJT A;  4G22 A;  1CLA A;  5KJW A;  1NOC B;  2E1V A;  4HVM A;  3B2S A;  3MAE A;  1EAD A;  1E2O A;  1C4T A;  1XL7 A;  2RKV A;  4G0B A;  4KE4 A;  3U9F A;  2RKT A;  1PD5 A;  2XR7 A;  4KEC A;  1DPB A;  2CLA A;  2JGP A;  1EAF A;  2BGH A;  3B30 A;  2ZBA A;  2I9D A;  2IHW A;  5FAL A;  5KJS A;  1SCZ A;  1Q23 A;  2XHG A;  1DPD A;  2II3 A;  4N72 A;  2E1U A;  1XMC A;  4JN5 A;  3L60 A;  2E1T A;  1DPC A;  2II5 A; 
#chains in the Genus database with same CATH topology
 1CIA A;  1EAC A;  5DUA A;  4CLA A;  3FP0 A;  2H3P A;  1EAB A;  1QCA A;  2H3U A;  1T1U A;  2FYO A;  1E2O A;  1C4T A;  2RKT A;  2XR7 A;  2CLA A;  2JGP A;  5KJS A;  2XHG A;  2E1U A;  1NDI A;  2FW3 A;  1L5A A;  1EAA A;  4EPH A;  1XL8 A;  2H3W A;  3CLA A;  3FOT A;  1XMD A;  5KJW A;  1NOC B;  4HVM A;  3MAE A;  1XL7 A;  2FY4 A;  2H4T A;  1NDF A;  2FY2 A;  1DPB A;  4KEC A;  1SCZ A;  2FY3 A;  1XMC A;  4JN5 A;  1T7Q A;  1DPC A;  2II5 A;  2II4 A;  2VSQ A;  4G2M A;  5KJV A;  1EAE A;  1S5O A;  1T7O A;  5KJT A;  2E1V A;  3B2S A;  2RKV A;  2BGH A;  2IHW A;  1T7N A;  1Q23 A;  1DPD A;  2II3 A;  1NM8 A;  3L60 A;  2E1T A;  2DEB A;  4EP9 A;  5KJU A;  3U9B A;  4JN3 A;  1Q9J A;  5T3E A;  4EYW A;  5FAN A;  5DU9 A;  4G22 A;  1CLA A;  1EAD A;  4KE4 A;  4G0B A;  3U9F A;  1PD5 A;  1EAF A;  2RCU A;  1Q6X A;  3B30 A;  1NDB A;  2ZBA A;  5FAL A;  2FY5 A;  4N72 A;  2I9D A; 
#chains in the Genus database with same CATH homology
 1EAA A;  2II4 A;  5KJU A;  1CIA A;  1XL8 A;  1EAC A;  3U9B A;  5DUA A;  4JN3 A;  2VSQ A;  1Q9J A;  3FP0 A;  5T3E A;  4CLA A;  1EAB A;  4G2M A;  1L5A A;  3CLA A;  1QCA A;  1EAE A;  5KJV A;  3FOT A;  5FAN A;  1XMD A;  5DU9 A;  5KJT A;  4G22 A;  1CLA A;  5KJW A;  1NOC B;  2E1V A;  4HVM A;  3B2S A;  3MAE A;  1EAD A;  1E2O A;  1C4T A;  1XL7 A;  2RKV A;  4G0B A;  4KE4 A;  3U9F A;  2RKT A;  1PD5 A;  2XR7 A;  4KEC A;  1DPB A;  2CLA A;  2JGP A;  1EAF A;  2BGH A;  3B30 A;  2ZBA A;  2I9D A;  2IHW A;  5FAL A;  5KJS A;  1SCZ A;  1Q23 A;  2XHG A;  1DPD A;  2II3 A;  4N72 A;  2E1U A;  1XMC A;  4JN5 A;  3L60 A;  2E1T A;  1DPC A;  2II5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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