2IHWA

Crystal structure of a cubic core of the dihydrolipoamide acyltransferase (e2b) component in the branched-chain alpha-ketoacid dehydrogenase complex (bckdc), apo form
Total Genus 68
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
68
sequence length
234
structure length
234
Chain Sequence
GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Bos taurus
publication title A synchronized substrate-gating mechanism revealed by cubic-core structure of the bovine branched-chain alpha-ketoacid dehydrogenase complex.
pubmed doi rcsb
molecule keywords Lipoamide acyltransferase component of branched-chain alpha-
total genus 68
structure length 234
sequence length 234
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 2.3.1.168: Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase.
pdb deposition date 2006-09-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 2ihwA01
3B2SA 3U9BA 2I9DA 1EAFA 5KJWA 2VSQA 2RKTA 3MAEA 1EACA 1XL7A 5DU9A 1XMCA 1Q9JA 4N72A 3U9FA 1EAAA 1QCAA 1DPDA 1EAEA 2JGPA 2II3A 5KJVA 1E2OA 4G2MA 1SCZA 3B30A 4HVMA 2CLAA 4JN5A 2E1TA 2II5A 1L5AA 1NOCB 5T3EA 4CLAA 1EABA 5KJSA 4G22A 1CLAA 2XHGA 1DPBA 2E1UA 4JN3A 5DUAA 5KJTA 2ZBAA 1XL8A 3L60A 1XMDA 2IHWA 2E1VA 4G0BA 1Q23A 1PD5A 1CIAA 2II4A 2XR7A 3CLAA 3FP0A 5FANA 5FALA 2RKVA 5KJUA 3FOTA 1C4TA 2BGHA 4KECA 1DPCA 1EADA 4KE4A
chains in the Genus database with same CATH superfamily
3U9BA 1NM8A 2I9DA 5KJWA 2H4TA 1T1UA 2RCUA 1DPDA 1Q6XA 1SCZA 2CLAA 2II5A 1L5AA 1NOCB 4G22A 1CLAA 2E1UA 2ZBAA 3L60A 2DEBA 1Q23A 2II4A 3FP0A 5FANA 5KJUA 2H3PA 1T7QA 2FY2A 4EYWA 4KE4A 1NDIA 2RKTA 3MAEA 5DU9A 1XMCA 4N72A 2JGPA 1NDBA 2II3A 1E2OA 3B30A 5T3EA 1EABA 1XL8A 2H3WA 2IHWA 2E1VA 2RKVA 1C4TA 2BGHA 1NDFA 1DPCA 1EADA 2VSQA 1EACA 1XL7A 1Q9JA 1QCAA 2FYOA 4G2MA 4JN5A 4EPHA 4CLAA 5DUAA 2XHGA 4JN3A 4G0BA 1PD5A 1CIAA 3CLAA 2H3UA 3FOTA 1S5OA 3B2SA 1EAFA 1T7OA 4EP9A 3U9FA 1EAAA 1EAEA 5KJVA 4HVMA 2FY4A 1T7NA 2E1TA 5KJSA 5KJTA 1DPBA 1XMDA 2FY3A 2XR7A 2FW3A 5FALA 2FY5A 4KECA
chains in the Genus database with same CATH topology
3B2SA 3U9BA 2I9DA 1EAFA 5KJWA 2VSQA 2RKTA 3MAEA 1EACA 1XL7A 5DU9A 1XMCA 1Q9JA 4N72A 3U9FA 1EAAA 1QCAA 1DPDA 1EAEA 2JGPA 2II3A 5KJVA 1E2OA 4G2MA 1SCZA 3B30A 4HVMA 2CLAA 4JN5A 2E1TA 2II5A 1L5AA 1NOCB 5T3EA 4CLAA 1EABA 5KJSA 4G22A 1CLAA 2XHGA 1DPBA 2E1UA 4JN3A 5DUAA 5KJTA 2ZBAA 1XL8A 3L60A 1XMDA 2IHWA 2E1VA 4G0BA 1Q23A 1PD5A 1CIAA 2II4A 2XR7A 3CLAA 3FP0A 5FANA 5FALA 2RKVA 5KJUA 3FOTA 1C4TA 2BGHA 4KECA 1DPCA 1EADA 4KE4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3B2S A;  3U9B A;  2I9D A;  1EAF A;  5KJW A;  2VSQ A;  2RKT A;  3MAE A;  1EAC A;  1XL7 A;  5DU9 A;  1XMC A;  1Q9J A;  4N72 A;  3U9F A;  1EAA A;  1QCA A;  1DPD A;  1EAE A;  2JGP A;  2II3 A;  5KJV A;  1E2O A;  4G2M A;  1SCZ A;  3B30 A;  4HVM A;  2CLA A;  4JN5 A;  2E1T A;  2II5 A;  1L5A A;  1NOC B;  5T3E A;  4CLA A;  1EAB A;  5KJS A;  4G22 A;  1CLA A;  2XHG A;  1DPB A;  2E1U A;  4JN3 A;  5DUA A;  5KJT A;  2ZBA A;  1XL8 A;  3L60 A;  1XMD A;  2IHW A;  2E1V A;  4G0B A;  1Q23 A;  1PD5 A;  1CIA A;  2II4 A;  2XR7 A;  3CLA A;  3FP0 A;  5FAN A;  5FAL A;  2RKV A;  5KJU A;  3FOT A;  1C4T A;  2BGH A;  4KEC A;  1DPC A;  1EAD A;  4KE4 A; 
#chains in the Genus database with same CATH topology
 3U9B A;  1NM8 A;  2I9D A;  5KJW A;  2H4T A;  1T1U A;  2RCU A;  1DPD A;  1Q6X A;  1SCZ A;  2CLA A;  2II5 A;  1L5A A;  1NOC B;  4G22 A;  1CLA A;  2E1U A;  2ZBA A;  3L60 A;  2DEB A;  1Q23 A;  2II4 A;  3FP0 A;  5FAN A;  5KJU A;  2H3P A;  1T7Q A;  2FY2 A;  4EYW A;  4KE4 A;  1NDI A;  2RKT A;  3MAE A;  5DU9 A;  1XMC A;  4N72 A;  2JGP A;  1NDB A;  2II3 A;  1E2O A;  3B30 A;  5T3E A;  1EAB A;  1XL8 A;  2H3W A;  2IHW A;  2E1V A;  2RKV A;  1C4T A;  2BGH A;  1NDF A;  1DPC A;  1EAD A;  2VSQ A;  1EAC A;  1XL7 A;  1Q9J A;  1QCA A;  2FYO A;  4G2M A;  4JN5 A;  4EPH A;  4CLA A;  5DUA A;  2XHG A;  4JN3 A;  4G0B A;  1PD5 A;  1CIA A;  3CLA A;  2H3U A;  3FOT A;  1S5O A;  3B2S A;  1EAF A;  1T7O A;  4EP9 A;  3U9F A;  1EAA A;  1EAE A;  5KJV A;  4HVM A;  2FY4 A;  1T7N A;  2E1T A;  5KJS A;  5KJT A;  1DPB A;  1XMD A;  2FY3 A;  2XR7 A;  2FW3 A;  5FAL A;  2FY5 A;  4KEC A; 
#chains in the Genus database with same CATH homology
 3B2S A;  3U9B A;  2I9D A;  1EAF A;  5KJW A;  2VSQ A;  2RKT A;  3MAE A;  1EAC A;  1XL7 A;  5DU9 A;  1XMC A;  1Q9J A;  4N72 A;  3U9F A;  1EAA A;  1QCA A;  1DPD A;  1EAE A;  2JGP A;  2II3 A;  5KJV A;  1E2O A;  4G2M A;  1SCZ A;  3B30 A;  4HVM A;  2CLA A;  4JN5 A;  2E1T A;  2II5 A;  1L5A A;  1NOC B;  5T3E A;  4CLA A;  1EAB A;  5KJS A;  4G22 A;  1CLA A;  2XHG A;  1DPB A;  2E1U A;  4JN3 A;  5DUA A;  5KJT A;  2ZBA A;  1XL8 A;  3L60 A;  1XMD A;  2IHW A;  2E1V A;  4G0B A;  1Q23 A;  1PD5 A;  1CIA A;  2II4 A;  2XR7 A;  3CLA A;  3FP0 A;  5FAN A;  5FAL A;  2RKV A;  5KJU A;  3FOT A;  1C4T A;  2BGH A;  4KEC A;  1DPC A;  1EAD A;  4KE4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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