1C4TA

Catalytic domain from trimeric dihydrolipoamide succinyltransferase
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
229
structure length
226
Chain Sequence
RSEKRVPMRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords PROTEIN (DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE)
publication title Expression, purification, and structural analysis of the trimeric form of the catalytic domain of the Escherichia coli dihydrolipoamide succinyltransferase.
pubmed rcsb
source organism Escherichia coli
total genus 64
structure length 226
sequence length 229
chains with identical sequence B, C
ec nomenclature ec 2.3.1.61: Dihydrolipoyllysine-residue succinyltransferase.
pdb deposition date 1999-09-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1c4tA00
3CLAA 2VSQA 2II4A 4N72A 1L5AA 4HVMA 1Q9JA 3FOTA 1EAEA 1XL7A 4KE4A 2II5A 5KJVA 4CLAA 2RKVA 3L60A 4JN3A 5KJTA 3U9BA 4G22A 2E1VA 2E1TA 1CIAA 1XMDA 1C4TA 2XHGA 2II3A 4JN5A 4KECA 1NOCB 1CLAA 5DU9A 3U9FA 1DPDA 4G2MA 5FALA 2JGPA 5KJSA 5T3EA 1EAFA 2BGHA 4G0BA 3B30A 1EABA 3MAEA 5KJWA 1XMCA 1EACA 1SCZA 2CLAA 1Q23A 1XL8A 2E1UA 2I9DA 2RKTA 3B2SA 5DUAA 1DPBA 5FANA 3FP0A 1DPCA 1PD5A 2IHWA 1EADA 1EAAA 1E2OA 1QCAA 5KJUA 2ZBAA 2XR7A
chains in the Genus database with same CATH superfamily
1L5AA 1Q9JA 3FOTA 1EAEA 1XL7A 4KE4A 2FY4A 1S5OA 1T1UA 2XHGA 2FY5A 1DPDA 1EAFA 3B30A 1EABA 1SCZA 1XL8A 3B2SA 2FY3A 4EP9A 2IHWA 4EPHA 1EAAA 1E2OA 1QCAA 5KJUA 1NM8A 4N72A 4HVMA 4EYWA 5KJVA 2RKVA 4JN3A 1T7QA 1T7OA 2E1TA 1XMDA 2FYOA 5T3EA 1NDFA 1EADA 2VSQA 2II4A 2FY2A 4CLAA 5KJTA 3U9BA 1Q6XA 1CIAA 4JN5A 4KECA 2JGPA 2RCUA 5KJSA 2BGHA 1NDBA 1EACA 2I9DA 2CLAA 2RKTA 2E1UA 5DUAA 2DEBA 3FP0A 1T7NA 1DPCA 1PD5A 2FW3A 2XR7A 3CLAA 2H3PA 2II5A 3L60A 2H4TA 4G22A 2E1VA 1C4TA 2H3UA 2II3A 1NOCB 1CLAA 5DU9A 3U9FA 4G2MA 5FALA 2H3WA 4G0BA 3MAEA 5KJWA 1XMCA 1Q23A 5FANA 1DPBA 1NDIA 2ZBAA
chains in the Genus database with same CATH topology
3CLAA 2VSQA 2II4A 4N72A 1L5AA 4HVMA 1Q9JA 3FOTA 1EAEA 1XL7A 4KE4A 2II5A 5KJVA 4CLAA 2RKVA 3L60A 4JN3A 5KJTA 3U9BA 4G22A 2E1VA 2E1TA 1CIAA 1XMDA 1C4TA 2XHGA 2II3A 4JN5A 4KECA 1NOCB 1CLAA 5DU9A 3U9FA 1DPDA 4G2MA 5FALA 2JGPA 5KJSA 5T3EA 1EAFA 2BGHA 4G0BA 3B30A 1EABA 3MAEA 5KJWA 1XMCA 1EACA 1SCZA 2CLAA 1Q23A 1XL8A 2E1UA 2I9DA 2RKTA 3B2SA 5DUAA 1DPBA 5FANA 3FP0A 1DPCA 1PD5A 2IHWA 1EADA 1EAAA 1E2OA 1QCAA 5KJUA 2ZBAA 2XR7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CLA A;  2VSQ A;  2II4 A;  4N72 A;  1L5A A;  4HVM A;  1Q9J A;  3FOT A;  1EAE A;  1XL7 A;  4KE4 A;  2II5 A;  5KJV A;  4CLA A;  2RKV A;  3L60 A;  4JN3 A;  5KJT A;  3U9B A;  4G22 A;  2E1V A;  2E1T A;  1CIA A;  1XMD A;  1C4T A;  2XHG A;  2II3 A;  4JN5 A;  4KEC A;  1NOC B;  1CLA A;  5DU9 A;  3U9F A;  1DPD A;  4G2M A;  5FAL A;  2JGP A;  5KJS A;  5T3E A;  1EAF A;  2BGH A;  4G0B A;  3B30 A;  1EAB A;  3MAE A;  5KJW A;  1XMC A;  1EAC A;  1SCZ A;  2CLA A;  1Q23 A;  1XL8 A;  2E1U A;  2I9D A;  2RKT A;  3B2S A;  5DUA A;  1DPB A;  5FAN A;  3FP0 A;  1DPC A;  1PD5 A;  2IHW A;  1EAD A;  1EAA A;  1E2O A;  1QCA A;  5KJU A;  2ZBA A;  2XR7 A; 
#chains in the Genus database with same CATH topology
 1L5A A;  1Q9J A;  3FOT A;  1EAE A;  1XL7 A;  4KE4 A;  2FY4 A;  1S5O A;  1T1U A;  2XHG A;  2FY5 A;  1DPD A;  1EAF A;  3B30 A;  1EAB A;  1SCZ A;  1XL8 A;  3B2S A;  2FY3 A;  4EP9 A;  2IHW A;  4EPH A;  1EAA A;  1E2O A;  1QCA A;  5KJU A;  1NM8 A;  4N72 A;  4HVM A;  4EYW A;  5KJV A;  2RKV A;  4JN3 A;  1T7Q A;  1T7O A;  2E1T A;  1XMD A;  2FYO A;  5T3E A;  1NDF A;  1EAD A;  2VSQ A;  2II4 A;  2FY2 A;  4CLA A;  5KJT A;  3U9B A;  1Q6X A;  1CIA A;  4JN5 A;  4KEC A;  2JGP A;  2RCU A;  5KJS A;  2BGH A;  1NDB A;  1EAC A;  2I9D A;  2CLA A;  2RKT A;  2E1U A;  5DUA A;  2DEB A;  3FP0 A;  1T7N A;  1DPC A;  1PD5 A;  2FW3 A;  2XR7 A;  3CLA A;  2H3P A;  2II5 A;  3L60 A;  2H4T A;  4G22 A;  2E1V A;  1C4T A;  2H3U A;  2II3 A;  1NOC B;  1CLA A;  5DU9 A;  3U9F A;  4G2M A;  5FAL A;  2H3W A;  4G0B A;  3MAE A;  5KJW A;  1XMC A;  1Q23 A;  5FAN A;  1DPB A;  1NDI A;  2ZBA A; 
#chains in the Genus database with same CATH homology
 3CLA A;  2VSQ A;  2II4 A;  4N72 A;  1L5A A;  4HVM A;  1Q9J A;  3FOT A;  1EAE A;  1XL7 A;  4KE4 A;  2II5 A;  5KJV A;  4CLA A;  2RKV A;  3L60 A;  4JN3 A;  5KJT A;  3U9B A;  4G22 A;  2E1V A;  2E1T A;  1CIA A;  1XMD A;  1C4T A;  2XHG A;  2II3 A;  4JN5 A;  4KEC A;  1NOC B;  1CLA A;  5DU9 A;  3U9F A;  1DPD A;  4G2M A;  5FAL A;  2JGP A;  5KJS A;  5T3E A;  1EAF A;  2BGH A;  4G0B A;  3B30 A;  1EAB A;  3MAE A;  5KJW A;  1XMC A;  1EAC A;  1SCZ A;  2CLA A;  1Q23 A;  1XL8 A;  2E1U A;  2I9D A;  2RKT A;  3B2S A;  5DUA A;  1DPB A;  5FAN A;  3FP0 A;  1DPC A;  1PD5 A;  2IHW A;  1EAD A;  1EAA A;  1E2O A;  1QCA A;  5KJU A;  2ZBA A;  2XR7 A; 
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