4KE4A

Elucidation of the structure and reaction mechanism of sorghum bicolor hydroxycinnamoyltransferase and its structural relationship to other coa-dependent transferases and synthases
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
448
structure length
437
Chain Sequence
MKITVRGSEMVYPAAETPRRRLWNSGPDLVVPRFHTPSVYFFRRRDADGNDLTAADGSFFDGARMRRALAEALVPFYPMAGRLARDEDGRVEIDCNAAGVLFQEADAPDATIDYFGDFAPTMELKRLIPTVDFSDDTAFPLLVLQVTHFKCGGVAIGVGMQHHVADGFSGLHFINSWADLCRGVPIAVMPFIDRSLLRARDPPAPVYPHVEYQPAPAMLSSATPPAAVAIFKLSRAELGRLRSQVPAREREGAPRFSTYAVLAAHVWRCASLARGLPADQPTKLYCATDGRQRLQPPLPEGYFGNVIFTATPLANAGTVTAGVAEGAAVIQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKLIYDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyl transferase
publication title Elucidation of the structure and reaction mechanism of sorghum hydroxycinnamoyltransferase and its structural relationship to other coenzyme a-dependent transferases and synthases.
pubmed doi rcsb
source organism Sorghum bicolor
molecule tags Transferase
total genus 130
structure length 437
sequence length 448
ec nomenclature
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 4ke4A02
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 4ke4A01
1DPCA 1Q9JA 2RKVA 3L60A 5KJWA 1QCAA 2VSQA 4G22A 3FP0A 3MAEA 4CLAA 1Q23A 2II3A 1NOCB 2E1VA 2XR7A 4JN3A 4N72A 1DPDA 3B2SA 4KECA 2II4A 4HVMA 2II5A 5FANA 2E1TA 2IHWA 5DUAA 5KJVA 1DPBA 2JGPA 3B30A 1CLAA 1E2OA 2XHGA 2I9DA 5DU9A 1C4TA 1XL7A 1EACA 1EAFA 2CLAA 1XMDA 4G0BA 1SCZA 1XMCA 2E1UA 5T3EA 5FALA 1EAEA 3FOTA 4G2MA 1EABA 5KJUA 5KJSA 1PD5A 4JN5A 1XL8A 1CIAA 1EAAA 2ZBAA 3U9BA 3U9FA 4KE4A 1L5AA 3CLAA 2RKTA 1EADA 2BGHA 5KJTA
chains in the Genus database with same CATH superfamily
1NM8A 2VSQA 4HVMA 2FY5A 1Q6XA 1CLAA 2XHGA 1EAFA 4G0BA 1XMCA 3FOTA 4G2MA 1S5OA 2FW3A 1CIAA 3U9FA 3CLAA 2RKTA 1EADA 4EPHA 5KJTA 1DPCA 3L60A 1T7NA 3FP0A 2II3A 2XR7A 2II4A 2II5A 5FANA 2E1TA 5DUAA 1DPBA 3B30A 2H3UA 1E2OA 2FY2A 2H3PA 1SCZA 1T7QA 1EABA 5KJSA 1XL8A 2DEBA 1NDIA 1QCAA 4G22A 2FY3A 1NOCB 4JN3A 2FYOA 1DPDA 4EP9A 2JGPA 1T7OA 2I9DA 1C4TA 1EACA 2CLAA 2E1UA 2FY4A 5FALA 1EAEA 5KJUA 1PD5A 4JN5A 1L5AA 2H3WA 1Q9JA 2RKVA 5KJWA 4CLAA 3MAEA 1Q23A 2E1VA 4N72A 3B2SA 4KECA 2H4TA 5KJVA 2IHWA 1T1UA 5DU9A 1XL7A 1NDBA 1XMDA 5T3EA 2RCUA 3U9BA 1EAAA 2ZBAA 4KE4A 1NDFA 4EYWA 2BGHA
chains in the Genus database with same CATH topology
1DPCA 1Q9JA 2RKVA 3L60A 5KJWA 1QCAA 2VSQA 4G22A 3FP0A 3MAEA 4CLAA 1Q23A 2II3A 1NOCB 2E1VA 2XR7A 4JN3A 4N72A 1DPDA 3B2SA 4KECA 2II4A 4HVMA 2II5A 5FANA 2E1TA 2IHWA 5DUAA 5KJVA 1DPBA 2JGPA 3B30A 1CLAA 1E2OA 2XHGA 2I9DA 5DU9A 1C4TA 1XL7A 1EACA 1EAFA 2CLAA 1XMDA 4G0BA 1SCZA 1XMCA 2E1UA 5T3EA 5FALA 1EAEA 3FOTA 4G2MA 1EABA 5KJUA 5KJSA 1PD5A 4JN5A 1XL8A 1CIAA 1EAAA 2ZBAA 3U9BA 3U9FA 4KE4A 1L5AA 3CLAA 2RKTA 1EADA 2BGHA 5KJTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DPC A;  1Q9J A;  2RKV A;  3L60 A;  5KJW A;  1QCA A;  2VSQ A;  4G22 A;  3FP0 A;  3MAE A;  4CLA A;  1Q23 A;  2II3 A;  1NOC B;  2E1V A;  2XR7 A;  4JN3 A;  4N72 A;  1DPD A;  3B2S A;  4KEC A;  2II4 A;  4HVM A;  2II5 A;  5FAN A;  2E1T A;  2IHW A;  5DUA A;  5KJV A;  1DPB A;  2JGP A;  3B30 A;  1CLA A;  1E2O A;  2XHG A;  2I9D A;  5DU9 A;  1C4T A;  1XL7 A;  1EAC A;  1EAF A;  2CLA A;  1XMD A;  4G0B A;  1SCZ A;  1XMC A;  2E1U A;  5T3E A;  5FAL A;  1EAE A;  3FOT A;  4G2M A;  1EAB A;  5KJU A;  5KJS A;  1PD5 A;  4JN5 A;  1XL8 A;  1CIA A;  1EAA A;  2ZBA A;  3U9B A;  3U9F A;  4KE4 A;  1L5A A;  3CLA A;  2RKT A;  1EAD A;  2BGH A;  5KJT A; 
#chains in the Genus database with same CATH topology
 1NM8 A;  2VSQ A;  4HVM A;  2FY5 A;  1Q6X A;  1CLA A;  2XHG A;  1EAF A;  4G0B A;  1XMC A;  3FOT A;  4G2M A;  1S5O A;  2FW3 A;  1CIA A;  3U9F A;  3CLA A;  2RKT A;  1EAD A;  4EPH A;  5KJT A;  1DPC A;  3L60 A;  1T7N A;  3FP0 A;  2II3 A;  2XR7 A;  2II4 A;  2II5 A;  5FAN A;  2E1T A;  5DUA A;  1DPB A;  3B30 A;  2H3U A;  1E2O A;  2FY2 A;  2H3P A;  1SCZ A;  1T7Q A;  1EAB A;  5KJS A;  1XL8 A;  2DEB A;  1NDI A;  1QCA A;  4G22 A;  2FY3 A;  1NOC B;  4JN3 A;  2FYO A;  1DPD A;  4EP9 A;  2JGP A;  1T7O A;  2I9D A;  1C4T A;  1EAC A;  2CLA A;  2E1U A;  2FY4 A;  5FAL A;  1EAE A;  5KJU A;  1PD5 A;  4JN5 A;  1L5A A;  2H3W A;  1Q9J A;  2RKV A;  5KJW A;  4CLA A;  3MAE A;  1Q23 A;  2E1V A;  4N72 A;  3B2S A;  4KEC A;  2H4T A;  5KJV A;  2IHW A;  1T1U A;  5DU9 A;  1XL7 A;  1NDB A;  1XMD A;  5T3E A;  2RCU A;  3U9B A;  1EAA A;  2ZBA A;  4KE4 A;  1NDF A;  4EYW A;  2BGH A; 
#chains in the Genus database with same CATH homology
 1DPC A;  1Q9J A;  2RKV A;  3L60 A;  5KJW A;  1QCA A;  2VSQ A;  4G22 A;  3FP0 A;  3MAE A;  4CLA A;  1Q23 A;  2II3 A;  1NOC B;  2E1V A;  2XR7 A;  4JN3 A;  4N72 A;  1DPD A;  3B2S A;  4KEC A;  2II4 A;  4HVM A;  2II5 A;  5FAN A;  2E1T A;  2IHW A;  5DUA A;  5KJV A;  1DPB A;  2JGP A;  3B30 A;  1CLA A;  1E2O A;  2XHG A;  2I9D A;  5DU9 A;  1C4T A;  1XL7 A;  1EAC A;  1EAF A;  2CLA A;  1XMD A;  4G0B A;  1SCZ A;  1XMC A;  2E1U A;  5T3E A;  5FAL A;  1EAE A;  3FOT A;  4G2M A;  1EAB A;  5KJU A;  5KJS A;  1PD5 A;  4JN5 A;  1XL8 A;  1CIA A;  1EAA A;  2ZBA A;  3U9B A;  3U9F A;  4KE4 A;  1L5A A;  3CLA A;  2RKT A;  1EAD A;  2BGH A;  5KJT A; 
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similar chains in the Genus database (?% sequence similarity)
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