4KE4A

Elucidation of the structure and reaction mechanism of sorghum bicolor hydroxycinnamoyltransferase and its structural relationship to other coa-dependent transferases and synthases
Total Genus 130
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
448
structure length
437
Chain Sequence
b'MKITVRGSEMVYPAAETPRRRLWNSGPDLVVPRFHTPSVYFFRRRDADGNDLTAADGSFFDGARMRRALAEALVPFYPMAGRLARDEDGRVEIDCNAAGVLFQEADAPDATIDYFGDFAPTMELKRLIPTVDFSDDTAFPLLVLQVTHFKCGGVAIGVGMQHHVADGFSGLHFINSWADLCRGVPIAVMPFIDRSLLRARDPPAPVYPHVEYQPAPAMLSSATPPAAVAIFKLSRAELGRLRSQVPAREREGAPRFSTYAVLAAHVWRCASLARGLPADQPTKLYCATDGRQRLQPPLPEGYFGNVIFTATPLANAGTVTAGVAEGAAVIQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKLIYDF'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords Hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyl transferase
publication title Elucidation of the structure and reaction mechanism of sorghum hydroxycinnamoyltransferase and its structural relationship to other coenzyme a-dependent transferases and synthases.
pubmed doi rcsb
source organism Sorghum bicolor
molecule tags Transferase
total genus 130
structure length 437
sequence length 448
ec nomenclature
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 4ke4A02
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 4ke4A01
1EABA 1NOCB 2ZBAA 1C4TA 2BGHA 5DU9A 2RKTA 1DPDA 4JN5A 4CLAA 5T3EA 4G2MA 1XMDA 1EADA 1DPBA 2XR7A 4G0BA 4HVMA 1XMCA 2I9DA 2IHWA 2E1UA 4G22A 1EAFA 3FP0A 5KJUA 5KJTA 1SCZA 2E1TA 2II5A 3U9FA 2XHGA 1Q23A 1QCAA 3CLAA 5FANA 2VSQA 5KJWA 5FALA 2II3A 2RKVA 4JN3A 1PD5A 2JGPA 1DPCA 4KE4A 2CLAA 3FOTA 1E2OA 2II4A 3B30A 4N72A 1Q9JA 1EAAA 1EAEA 1L5AA 5KJVA 1CIAA 1XL8A 3U9BA 5KJSA 3MAEA 1XL7A 4KECA 5DUAA 1CLAA 1EACA 3L60A 3B2SA 2E1VA
chains in the Genus database with same CATH superfamily
2RKTA 1XMDA 2XR7A 5KJUA 2FW3A 1SCZA 5FANA 2II3A 3B30A 1Q9JA 1T7NA 1L5AA 2H3PA 1CIAA 1XL8A 1T7QA 3MAEA 1XL7A 1CLAA 1EACA 1NOCB 1C4TA 1EADA 1DPBA 4G0BA 4HVMA 2I9DA 3U9FA 1Q23A 3CLAA 4KE4A 4EYWA 1EAEA 2H3UA 2H3WA 1T7OA 5DUAA 3B2SA 2ZBAA 2BGHA 1DPDA 4JN5A 2H4TA 4CLAA 4G2MA 2FY4A 1XMCA 2IHWA 2E1UA 1EAFA 3FP0A 4EPHA 5KJTA 2E1TA 2II5A 5FALA 2RKVA 4JN3A 1PD5A 2CLAA 3FOTA 2II4A 1S5OA 1EAAA 5KJVA 2RCUA 1T1UA 3U9BA 5KJSA 4EP9A 2FYOA 1Q6XA 1EABA 5DU9A 5T3EA 1NM8A 4G22A 2XHGA 1NDBA 2DEBA 1QCAA 2FY5A 1NDFA 2VSQA 5KJWA 2JGPA 1DPCA 1E2OA 1NDIA 4N72A 2FY3A 2FY2A 4KECA 3L60A 2E1VA
chains in the Genus database with same CATH topology
1EABA 1NOCB 2ZBAA 1C4TA 2BGHA 5DU9A 2RKTA 1DPDA 4JN5A 4CLAA 5T3EA 4G2MA 1XMDA 1EADA 1DPBA 2XR7A 4G0BA 4HVMA 1XMCA 2I9DA 2IHWA 2E1UA 4G22A 1EAFA 3FP0A 5KJUA 5KJTA 1SCZA 2E1TA 2II5A 3U9FA 2XHGA 1Q23A 1QCAA 3CLAA 5FANA 2VSQA 5KJWA 5FALA 2II3A 2RKVA 4JN3A 1PD5A 2JGPA 1DPCA 4KE4A 2CLAA 3FOTA 1E2OA 2II4A 3B30A 4N72A 1Q9JA 1EAAA 1EAEA 1L5AA 5KJVA 1CIAA 1XL8A 3U9BA 5KJSA 3MAEA 1XL7A 4KECA 5DUAA 1CLAA 1EACA 3L60A 3B2SA 2E1VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EAB A;  1NOC B;  2ZBA A;  1C4T A;  2BGH A;  5DU9 A;  2RKT A;  1DPD A;  4JN5 A;  4CLA A;  5T3E A;  4G2M A;  1XMD A;  1EAD A;  1DPB A;  2XR7 A;  4G0B A;  4HVM A;  1XMC A;  2I9D A;  2IHW A;  2E1U A;  4G22 A;  1EAF A;  3FP0 A;  5KJU A;  5KJT A;  1SCZ A;  2E1T A;  2II5 A;  3U9F A;  2XHG A;  1Q23 A;  1QCA A;  3CLA A;  5FAN A;  2VSQ A;  5KJW A;  5FAL A;  2II3 A;  2RKV A;  4JN3 A;  1PD5 A;  2JGP A;  1DPC A;  4KE4 A;  2CLA A;  3FOT A;  1E2O A;  2II4 A;  3B30 A;  4N72 A;  1Q9J A;  1EAA A;  1EAE A;  1L5A A;  5KJV A;  1CIA A;  1XL8 A;  3U9B A;  5KJS A;  3MAE A;  1XL7 A;  4KEC A;  5DUA A;  1CLA A;  1EAC A;  3L60 A;  3B2S A;  2E1V A; 
#chains in the Genus database with same CATH topology
 2RKT A;  1XMD A;  2XR7 A;  5KJU A;  2FW3 A;  1SCZ A;  5FAN A;  2II3 A;  3B30 A;  1Q9J A;  1T7N A;  1L5A A;  2H3P A;  1CIA A;  1XL8 A;  1T7Q A;  3MAE A;  1XL7 A;  1CLA A;  1EAC A;  1NOC B;  1C4T A;  1EAD A;  1DPB A;  4G0B A;  4HVM A;  2I9D A;  3U9F A;  1Q23 A;  3CLA A;  4KE4 A;  4EYW A;  1EAE A;  2H3U A;  2H3W A;  1T7O A;  5DUA A;  3B2S A;  2ZBA A;  2BGH A;  1DPD A;  4JN5 A;  2H4T A;  4CLA A;  4G2M A;  2FY4 A;  1XMC A;  2IHW A;  2E1U A;  1EAF A;  3FP0 A;  4EPH A;  5KJT A;  2E1T A;  2II5 A;  5FAL A;  2RKV A;  4JN3 A;  1PD5 A;  2CLA A;  3FOT A;  2II4 A;  1S5O A;  1EAA A;  5KJV A;  2RCU A;  1T1U A;  3U9B A;  5KJS A;  4EP9 A;  2FYO A;  1Q6X A;  1EAB A;  5DU9 A;  5T3E A;  1NM8 A;  4G22 A;  2XHG A;  1NDB A;  2DEB A;  1QCA A;  2FY5 A;  1NDF A;  2VSQ A;  5KJW A;  2JGP A;  1DPC A;  1E2O A;  1NDI A;  4N72 A;  2FY3 A;  2FY2 A;  4KEC A;  3L60 A;  2E1V A; 
#chains in the Genus database with same CATH homology
 1EAB A;  1NOC B;  2ZBA A;  1C4T A;  2BGH A;  5DU9 A;  2RKT A;  1DPD A;  4JN5 A;  4CLA A;  5T3E A;  4G2M A;  1XMD A;  1EAD A;  1DPB A;  2XR7 A;  4G0B A;  4HVM A;  1XMC A;  2I9D A;  2IHW A;  2E1U A;  4G22 A;  1EAF A;  3FP0 A;  5KJU A;  5KJT A;  1SCZ A;  2E1T A;  2II5 A;  3U9F A;  2XHG A;  1Q23 A;  1QCA A;  3CLA A;  5FAN A;  2VSQ A;  5KJW A;  5FAL A;  2II3 A;  2RKV A;  4JN3 A;  1PD5 A;  2JGP A;  1DPC A;  4KE4 A;  2CLA A;  3FOT A;  1E2O A;  2II4 A;  3B30 A;  4N72 A;  1Q9J A;  1EAA A;  1EAE A;  1L5A A;  5KJV A;  1CIA A;  1XL8 A;  3U9B A;  5KJS A;  3MAE A;  1XL7 A;  4KEC A;  5DUA A;  1CLA A;  1EAC A;  3L60 A;  3B2S A;  2E1V A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...