4KE4A

Elucidation of the structure and reaction mechanism of sorghum bicolor hydroxycinnamoyltransferase and its structural relationship to other coa-dependent transferases and synthases
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
448
structure length
437
Chain Sequence
MKITVRGSEMVYPAAETPRRRLWNSGPDLVVPRFHTPSVYFFRRRDADGNDLTAADGSFFDGARMRRALAEALVPFYPMAGRLARDEDGRVEIDCNAAGVLFQEADAPDATIDYFGDFAPTMELKRLIPTVDFSDDTAFPLLVLQVTHFKCGGVAIGVGMQHHVADGFSGLHFINSWADLCRGVPIAVMPFIDRSLLRARDPPAPVYPHVEYQPAPAMLSSATPPAAVAIFKLSRAELGRLRSQVPAREREGAPRFSTYAVLAAHVWRCASLARGLPADQPTKLYCATDGRQRLQPPLPEGYFGNVIFTATPLANAGTVTAGVAEGAAVIQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKLIYDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyl transferase
publication title Elucidation of the structure and reaction mechanism of sorghum hydroxycinnamoyltransferase and its structural relationship to other coenzyme a-dependent transferases and synthases.
pubmed doi rcsb
source organism Sorghum bicolor
total genus 130
structure length 437
sequence length 448
ec nomenclature
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 4ke4A02
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 4ke4A01
2JGPA 1PD5A 2CLAA 1EACA 4JN3A 5KJWA 1EAFA 1E2OA 1SCZA 5T3EA 2E1UA 2IHWA 2XHGA 3U9FA 1Q9JA 4G2MA 3L60A 3B2SA 5DU9A 5KJUA 1DPDA 4G0BA 4KECA 1NOCB 2VSQA 1DPCA 2XR7A 1XMDA 1EADA 3FP0A 2RKTA 2II5A 4N72A 5KJTA 2RKVA 4CLAA 1L5AA 1XL8A 1DPBA 3B30A 5DUAA 3CLAA 1C4TA 2BGHA 5FANA 1EAAA 5FALA 1EABA 3U9BA 2II4A 5KJSA 3MAEA 2ZBAA 1XMCA 4HVMA 4KE4A 1Q23A 2E1VA 2I9DA 1CIAA 1CLAA 1XL7A 2E1TA 3FOTA 4G22A 4JN5A 5KJVA 2II3A 1QCAA 1EAEA
chains in the Genus database with same CATH superfamily
2FY4A 2JGPA 2CLAA 2H4TA 2FY3A 2FYOA 3U9FA 5DU9A 1XMDA 5KJTA 2RKVA 1T7OA 1XL8A 2FY2A 1DPBA 3B30A 5FALA 1NDFA 2E1VA 1XL7A 2II3A 3FOTA 5KJWA 4G2MA 4EYWA 2II5A 2FY5A 1L5AA 5DUAA 3CLAA 2BGHA 1EAAA 3U9BA 2H3UA 5KJSA 1XMCA 4HVMA 1Q23A 1NDBA 2I9DA 1CIAA 4JN5A 4G22A 1EABA 1EACA 1EAFA 1SCZA 2IHWA 1NDIA 1DPDA 4KECA 1DPCA 2FW3A 1EADA 2RKTA 2H3WA 5FANA 2II4A 4EP9A 2RCUA 5KJVA 5KJUA 1EAEA 4EPHA 1PD5A 4JN3A 1E2OA 5T3EA 1T7NA 2E1UA 2XHGA 1Q9JA 3L60A 3B2SA 2DEBA 2H3PA 4G0BA 1NOCB 2VSQA 2XR7A 3FP0A 1T1UA 4N72A 4CLAA 1S5OA 1C4TA 1NM8A 3MAEA 2ZBAA 4KE4A 1CLAA 2E1TA 1Q6XA 1T7QA 1QCAA
chains in the Genus database with same CATH topology
2JGPA 1PD5A 2CLAA 1EACA 4JN3A 5KJWA 1EAFA 1E2OA 1SCZA 5T3EA 2E1UA 2IHWA 2XHGA 3U9FA 1Q9JA 4G2MA 3L60A 3B2SA 5DU9A 5KJUA 1DPDA 4G0BA 4KECA 1NOCB 2VSQA 1DPCA 2XR7A 1XMDA 1EADA 3FP0A 2RKTA 2II5A 4N72A 5KJTA 2RKVA 4CLAA 1L5AA 1XL8A 1DPBA 3B30A 5DUAA 3CLAA 1C4TA 2BGHA 5FANA 1EAAA 5FALA 1EABA 3U9BA 2II4A 5KJSA 3MAEA 2ZBAA 1XMCA 4HVMA 4KE4A 1Q23A 2E1VA 2I9DA 1CIAA 1CLAA 1XL7A 2E1TA 3FOTA 4G22A 4JN5A 5KJVA 2II3A 1QCAA 1EAEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JGP A;  1PD5 A;  2CLA A;  1EAC A;  4JN3 A;  5KJW A;  1EAF A;  1E2O A;  1SCZ A;  5T3E A;  2E1U A;  2IHW A;  2XHG A;  3U9F A;  1Q9J A;  4G2M A;  3L60 A;  3B2S A;  5DU9 A;  5KJU A;  1DPD A;  4G0B A;  4KEC A;  1NOC B;  2VSQ A;  1DPC A;  2XR7 A;  1XMD A;  1EAD A;  3FP0 A;  2RKT A;  2II5 A;  4N72 A;  5KJT A;  2RKV A;  4CLA A;  1L5A A;  1XL8 A;  1DPB A;  3B30 A;  5DUA A;  3CLA A;  1C4T A;  2BGH A;  5FAN A;  1EAA A;  5FAL A;  1EAB A;  3U9B A;  2II4 A;  5KJS A;  3MAE A;  2ZBA A;  1XMC A;  4HVM A;  4KE4 A;  1Q23 A;  2E1V A;  2I9D A;  1CIA A;  1CLA A;  1XL7 A;  2E1T A;  3FOT A;  4G22 A;  4JN5 A;  5KJV A;  2II3 A;  1QCA A;  1EAE A; 
#chains in the Genus database with same CATH topology
 2FY4 A;  2JGP A;  2CLA A;  2H4T A;  2FY3 A;  2FYO A;  3U9F A;  5DU9 A;  1XMD A;  5KJT A;  2RKV A;  1T7O A;  1XL8 A;  2FY2 A;  1DPB A;  3B30 A;  5FAL A;  1NDF A;  2E1V A;  1XL7 A;  2II3 A;  3FOT A;  5KJW A;  4G2M A;  4EYW A;  2II5 A;  2FY5 A;  1L5A A;  5DUA A;  3CLA A;  2BGH A;  1EAA A;  3U9B A;  2H3U A;  5KJS A;  1XMC A;  4HVM A;  1Q23 A;  1NDB A;  2I9D A;  1CIA A;  4JN5 A;  4G22 A;  1EAB A;  1EAC A;  1EAF A;  1SCZ A;  2IHW A;  1NDI A;  1DPD A;  4KEC A;  1DPC A;  2FW3 A;  1EAD A;  2RKT A;  2H3W A;  5FAN A;  2II4 A;  4EP9 A;  2RCU A;  5KJV A;  5KJU A;  1EAE A;  4EPH A;  1PD5 A;  4JN3 A;  1E2O A;  5T3E A;  1T7N A;  2E1U A;  2XHG A;  1Q9J A;  3L60 A;  3B2S A;  2DEB A;  2H3P A;  4G0B A;  1NOC B;  2VSQ A;  2XR7 A;  3FP0 A;  1T1U A;  4N72 A;  4CLA A;  1S5O A;  1C4T A;  1NM8 A;  3MAE A;  2ZBA A;  4KE4 A;  1CLA A;  2E1T A;  1Q6X A;  1T7Q A;  1QCA A; 
#chains in the Genus database with same CATH homology
 2JGP A;  1PD5 A;  2CLA A;  1EAC A;  4JN3 A;  5KJW A;  1EAF A;  1E2O A;  1SCZ A;  5T3E A;  2E1U A;  2IHW A;  2XHG A;  3U9F A;  1Q9J A;  4G2M A;  3L60 A;  3B2S A;  5DU9 A;  5KJU A;  1DPD A;  4G0B A;  4KEC A;  1NOC B;  2VSQ A;  1DPC A;  2XR7 A;  1XMD A;  1EAD A;  3FP0 A;  2RKT A;  2II5 A;  4N72 A;  5KJT A;  2RKV A;  4CLA A;  1L5A A;  1XL8 A;  1DPB A;  3B30 A;  5DUA A;  3CLA A;  1C4T A;  2BGH A;  5FAN A;  1EAA A;  5FAL A;  1EAB A;  3U9B A;  2II4 A;  5KJS A;  3MAE A;  2ZBA A;  1XMC A;  4HVM A;  4KE4 A;  1Q23 A;  2E1V A;  2I9D A;  1CIA A;  1CLA A;  1XL7 A;  2E1T A;  3FOT A;  4G22 A;  4JN5 A;  5KJV A;  2II3 A;  1QCA A;  1EAE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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