4KE4A

Elucidation of the structure and reaction mechanism of sorghum bicolor hydroxycinnamoyltransferase and its structural relationship to other coa-dependent transferases and synthases
Total Genus 130
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
130
sequence length
448
structure length
437
Chain Sequence
MKITVRGSEMVYPAAETPRRRLWNSGPDLVVPRFHTPSVYFFRRRDADGNDLTAADGSFFDGARMRRALAEALVPFYPMAGRLARDEDGRVEIDCNAAGVLFQEADAPDATIDYFGDFAPTMELKRLIPTVDFSDDTAFPLLVLQVTHFKCGGVAIGVGMQHHVADGFSGLHFINSWADLCRGVPIAVMPFIDRSLLRARDPPAPVYPHVEYQPAPAMLSSATPPAAVAIFKLSRAELGRLRSQVPAREREGAPRFSTYAVLAAHVWRCASLARGLPADQPTKLYCATDGRQRLQPPLPEGYFGNVIFTATPLANAGTVTAGVAEGAAVIQAALDRMDDGYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSANRDGSLSVAISLQAEHMEKFRKLIYDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyl transferase
publication title Elucidation of the structure and reaction mechanism of sorghum hydroxycinnamoyltransferase and its structural relationship to other coenzyme a-dependent transferases and synthases.
pubmed doi rcsb
source organism Sorghum bicolor
molecule tags Transferase
total genus 130
structure length 437
sequence length 448
ec nomenclature
pdb deposition date 2013-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02458 Transferase Transferase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 4ke4A02
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 4ke4A01
2E1UA 1XMDA 3B30A 3L60A 1EADA 4G2MA 5DUAA 1EAAA 4N72A 2XHGA 1CIAA 2CLAA 4KECA 2VSQA 2I9DA 2XR7A 4G22A 1DPBA 3FOTA 4G0BA 2JGPA 1NOCB 1EABA 4JN3A 1EACA 2II4A 4CLAA 5FANA 1Q9JA 2RKTA 4JN5A 5DU9A 2E1VA 4KE4A 1PD5A 1EAFA 2BGHA 1EAEA 3MAEA 1QCAA 1C4TA 2II3A 5KJUA 1DPDA 2II5A 1XL7A 2RKVA 3B2SA 5FALA 4HVMA 2IHWA 5KJVA 3FP0A 3U9FA 5T3EA 3U9BA 1E2OA 1XL8A 5KJTA 1DPCA 5KJWA 5KJSA 1SCZA 1XMCA 2E1TA 1Q23A 1L5AA 3CLAA 1CLAA 2ZBAA
chains in the Genus database with same CATH superfamily
2XHGA 2CLAA 4KECA 4JN3A 2H4TA 4JN5A 2E1VA 1NDIA 4EP9A 1DPDA 1XL7A 1E2OA 1NDFA 5KJTA 1DPCA 5KJWA 2E1TA 1XMDA 3B30A 1Q23A 2JGPA 2H3UA 1EACA 4CLAA 2RKTA 4EYWA 1PD5A 1EAFA 2BGHA 2FY2A 1EAEA 2FW3A 1C4TA 2II3A 2RKVA 3B2SA 4HVMA 2IHWA 3FP0A 3U9BA 1XL8A 1T7NA 1L5AA 4G2MA 1EAAA 4G0BA 1NOCB 1EABA 2II4A 2FY5A 2FY4A 2H3PA 5DU9A 4KE4A 3MAEA 1QCAA 2II5A 2FYOA 1S5OA 5T3EA 5KJSA 1NDBA 2RCUA 3CLAA 5DUAA 1CLAA 2ZBAA 2DEBA 2E1UA 3L60A 1EADA 1T7OA 4N72A 1CIAA 2VSQA 2I9DA 2XR7A 4G22A 1NM8A 1DPBA 1T1UA 1T7QA 3FOTA 2FY3A 5FANA 1Q9JA 1Q6XA 5KJUA 5FALA 5KJVA 3U9FA 1SCZA 1XMCA 2H3WA 4EPHA
chains in the Genus database with same CATH topology
2E1UA 1XMDA 3B30A 3L60A 1EADA 4G2MA 5DUAA 1EAAA 4N72A 2XHGA 1CIAA 2CLAA 4KECA 2VSQA 2I9DA 2XR7A 4G22A 1DPBA 3FOTA 4G0BA 2JGPA 1NOCB 1EABA 4JN3A 1EACA 2II4A 4CLAA 5FANA 1Q9JA 2RKTA 4JN5A 5DU9A 2E1VA 4KE4A 1PD5A 1EAFA 2BGHA 1EAEA 3MAEA 1QCAA 1C4TA 2II3A 5KJUA 1DPDA 2II5A 1XL7A 2RKVA 3B2SA 5FALA 4HVMA 2IHWA 5KJVA 3FP0A 3U9FA 5T3EA 3U9BA 1E2OA 1XL8A 5KJTA 1DPCA 5KJWA 5KJSA 1SCZA 1XMCA 2E1TA 1Q23A 1L5AA 3CLAA 1CLAA 2ZBAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E1U A;  1XMD A;  3B30 A;  3L60 A;  1EAD A;  4G2M A;  5DUA A;  1EAA A;  4N72 A;  2XHG A;  1CIA A;  2CLA A;  4KEC A;  2VSQ A;  2I9D A;  2XR7 A;  4G22 A;  1DPB A;  3FOT A;  4G0B A;  2JGP A;  1NOC B;  1EAB A;  4JN3 A;  1EAC A;  2II4 A;  4CLA A;  5FAN A;  1Q9J A;  2RKT A;  4JN5 A;  5DU9 A;  2E1V A;  4KE4 A;  1PD5 A;  1EAF A;  2BGH A;  1EAE A;  3MAE A;  1QCA A;  1C4T A;  2II3 A;  5KJU A;  1DPD A;  2II5 A;  1XL7 A;  2RKV A;  3B2S A;  5FAL A;  4HVM A;  2IHW A;  5KJV A;  3FP0 A;  3U9F A;  5T3E A;  3U9B A;  1E2O A;  1XL8 A;  5KJT A;  1DPC A;  5KJW A;  5KJS A;  1SCZ A;  1XMC A;  2E1T A;  1Q23 A;  1L5A A;  3CLA A;  1CLA A;  2ZBA A; 
#chains in the Genus database with same CATH topology
 2XHG A;  2CLA A;  4KEC A;  4JN3 A;  2H4T A;  4JN5 A;  2E1V A;  1NDI A;  4EP9 A;  1DPD A;  1XL7 A;  1E2O A;  1NDF A;  5KJT A;  1DPC A;  5KJW A;  2E1T A;  1XMD A;  3B30 A;  1Q23 A;  2JGP A;  2H3U A;  1EAC A;  4CLA A;  2RKT A;  4EYW A;  1PD5 A;  1EAF A;  2BGH A;  2FY2 A;  1EAE A;  2FW3 A;  1C4T A;  2II3 A;  2RKV A;  3B2S A;  4HVM A;  2IHW A;  3FP0 A;  3U9B A;  1XL8 A;  1T7N A;  1L5A A;  4G2M A;  1EAA A;  4G0B A;  1NOC B;  1EAB A;  2II4 A;  2FY5 A;  2FY4 A;  2H3P A;  5DU9 A;  4KE4 A;  3MAE A;  1QCA A;  2II5 A;  2FYO A;  1S5O A;  5T3E A;  5KJS A;  1NDB A;  2RCU A;  3CLA A;  5DUA A;  1CLA A;  2ZBA A;  2DEB A;  2E1U A;  3L60 A;  1EAD A;  1T7O A;  4N72 A;  1CIA A;  2VSQ A;  2I9D A;  2XR7 A;  4G22 A;  1NM8 A;  1DPB A;  1T1U A;  1T7Q A;  3FOT A;  2FY3 A;  5FAN A;  1Q9J A;  1Q6X A;  5KJU A;  5FAL A;  5KJV A;  3U9F A;  1SCZ A;  1XMC A;  2H3W A;  4EPH A; 
#chains in the Genus database with same CATH homology
 2E1U A;  1XMD A;  3B30 A;  3L60 A;  1EAD A;  4G2M A;  5DUA A;  1EAA A;  4N72 A;  2XHG A;  1CIA A;  2CLA A;  4KEC A;  2VSQ A;  2I9D A;  2XR7 A;  4G22 A;  1DPB A;  3FOT A;  4G0B A;  2JGP A;  1NOC B;  1EAB A;  4JN3 A;  1EAC A;  2II4 A;  4CLA A;  5FAN A;  1Q9J A;  2RKT A;  4JN5 A;  5DU9 A;  2E1V A;  4KE4 A;  1PD5 A;  1EAF A;  2BGH A;  1EAE A;  3MAE A;  1QCA A;  1C4T A;  2II3 A;  5KJU A;  1DPD A;  2II5 A;  1XL7 A;  2RKV A;  3B2S A;  5FAL A;  4HVM A;  2IHW A;  5KJV A;  3FP0 A;  3U9F A;  5T3E A;  3U9B A;  1E2O A;  1XL8 A;  5KJT A;  1DPC A;  5KJW A;  5KJS A;  1SCZ A;  1XMC A;  2E1T A;  1Q23 A;  1L5A A;  3CLA A;  1CLA A;  2ZBA A; 
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