1DPDA

Crystallographic and enzymatic investigations on the role of ser558, his610 and asn614 in the catalytic mechanism of azotobacter vinelandii dihydrolipoamide acetyltransferase (e2p)
Total Genus 67
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
243
structure length
243
Chain Sequence
IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTIASLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRLGDLLADIRAILL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystallographic and enzymatic investigations on the role of Ser558, His610, and Asn614 in the catalytic mechanism of Azotobacter vinelandii dihydrolipoamide acetyltransferase (E2p).
pubmed doi rcsb
molecule tags Dihydrolipoamide acetyltransferase
source organism Azotobacter vinelandii
molecule keywords DIHYDROLIPOYL-TRANSACETYLASE
total genus 67
structure length 243
sequence length 243
ec nomenclature ec 2.3.1.12: Dihydrolipoyllysine-residue acetyltransferase.
pdb deposition date 1995-02-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1dpdA00
1EAAA 1XMCA 2RKTA 4KECA 1DPBA 1QCAA 1PD5A 2IHWA 4KE4A 2XHGA 4CLAA 3B2SA 4HVMA 1EACA 3U9FA 5DU9A 5FALA 2II4A 1L5AA 1EADA 1Q9JA 2CLAA 1XMDA 5DUAA 5KJSA 4G0BA 5FANA 3L60A 5KJTA 1CLAA 1XL8A 3CLAA 3FP0A 1SCZA 3B30A 1XL7A 5T3EA 4G22A 3MAEA 4N72A 2II5A 1EAFA 2I9DA 3U9BA 3FOTA 1DPDA 2BGHA 2ZBAA 1CIAA 5KJVA 2VSQA 4JN3A 1DPCA 5KJUA 4JN5A 1Q23A 2E1UA 2XR7A 2RKVA 1E2OA 2E1TA 1EAEA 5KJWA 2JGPA 4G2MA 1C4TA 2E1VA 1EABA 2II3A 1NOCB
chains in the Genus database with same CATH superfamily
2FY2A 1DPBA 1EACA 5FALA 1L5AA 5DUAA 5KJSA 1CLAA 1SCZA 2H3PA 1EAFA 2I9DA 2FY5A 1T7NA 4JN3A 1E2OA 1C4TA 1EABA 2DEBA 5KJUA 1EAAA 1QCAA 1T1UA 1PD5A 2IHWA 4KE4A 1NDFA 1NDBA 1EADA 5FANA 4EPHA 2FYOA 1NDIA 1XL8A 3B30A 5T3EA 2FY3A 4N72A 3FOTA 5KJVA 2VSQA 4JN5A 1Q23A 1EAEA 5KJWA 2JGPA 4G2MA 2FY4A 1XMCA 2XHGA 4HVMA 3U9FA 1NM8A 2H3WA 1Q6XA 3CLAA 3FP0A 4EP9A 2RCUA 3MAEA 2II5A 1DPDA 2ZBAA 1CIAA 1DPCA 1T7QA 2E1UA 2RKVA 2XR7A 2E1VA 2II3A 1NOCB 2RKTA 4KECA 2H4TA 4CLAA 3B2SA 5DU9A 2II4A 1Q9JA 2CLAA 1XMDA 1T7OA 2H3UA 4G0BA 3L60A 5KJTA 1XL7A 1S5OA 4G22A 3U9BA 2FW3A 2BGHA 4EYWA 2E1TA
chains in the Genus database with same CATH topology
1EAAA 1XMCA 2RKTA 4KECA 1DPBA 1QCAA 1PD5A 2IHWA 4KE4A 2XHGA 4CLAA 3B2SA 4HVMA 1EACA 3U9FA 5DU9A 5FALA 2II4A 1L5AA 1EADA 1Q9JA 2CLAA 1XMDA 5DUAA 5KJSA 4G0BA 5FANA 3L60A 5KJTA 1CLAA 1XL8A 3CLAA 3FP0A 1SCZA 3B30A 1XL7A 5T3EA 4G22A 3MAEA 4N72A 2II5A 1EAFA 2I9DA 3U9BA 3FOTA 1DPDA 2BGHA 2ZBAA 1CIAA 5KJVA 2VSQA 4JN3A 1DPCA 5KJUA 4JN5A 1Q23A 2E1UA 2XR7A 2RKVA 1E2OA 2E1TA 1EAEA 5KJWA 2JGPA 4G2MA 1C4TA 2E1VA 1EABA 2II3A 1NOCB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EAA A;  1XMC A;  2RKT A;  4KEC A;  1DPB A;  1QCA A;  1PD5 A;  2IHW A;  4KE4 A;  2XHG A;  4CLA A;  3B2S A;  4HVM A;  1EAC A;  3U9F A;  5DU9 A;  5FAL A;  2II4 A;  1L5A A;  1EAD A;  1Q9J A;  2CLA A;  1XMD A;  5DUA A;  5KJS A;  4G0B A;  5FAN A;  3L60 A;  5KJT A;  1CLA A;  1XL8 A;  3CLA A;  3FP0 A;  1SCZ A;  3B30 A;  1XL7 A;  5T3E A;  4G22 A;  3MAE A;  4N72 A;  2II5 A;  1EAF A;  2I9D A;  3U9B A;  3FOT A;  1DPD A;  2BGH A;  2ZBA A;  1CIA A;  5KJV A;  2VSQ A;  4JN3 A;  1DPC A;  5KJU A;  4JN5 A;  1Q23 A;  2E1U A;  2XR7 A;  2RKV A;  1E2O A;  2E1T A;  1EAE A;  5KJW A;  2JGP A;  4G2M A;  1C4T A;  2E1V A;  1EAB A;  2II3 A;  1NOC B; 
#chains in the Genus database with same CATH topology
 2FY2 A;  1DPB A;  1EAC A;  5FAL A;  1L5A A;  5DUA A;  5KJS A;  1CLA A;  1SCZ A;  2H3P A;  1EAF A;  2I9D A;  2FY5 A;  1T7N A;  4JN3 A;  1E2O A;  1C4T A;  1EAB A;  2DEB A;  5KJU A;  1EAA A;  1QCA A;  1T1U A;  1PD5 A;  2IHW A;  4KE4 A;  1NDF A;  1NDB A;  1EAD A;  5FAN A;  4EPH A;  2FYO A;  1NDI A;  1XL8 A;  3B30 A;  5T3E A;  2FY3 A;  4N72 A;  3FOT A;  5KJV A;  2VSQ A;  4JN5 A;  1Q23 A;  1EAE A;  5KJW A;  2JGP A;  4G2M A;  2FY4 A;  1XMC A;  2XHG A;  4HVM A;  3U9F A;  1NM8 A;  2H3W A;  1Q6X A;  3CLA A;  3FP0 A;  4EP9 A;  2RCU A;  3MAE A;  2II5 A;  1DPD A;  2ZBA A;  1CIA A;  1DPC A;  1T7Q A;  2E1U A;  2RKV A;  2XR7 A;  2E1V A;  2II3 A;  1NOC B;  2RKT A;  4KEC A;  2H4T A;  4CLA A;  3B2S A;  5DU9 A;  2II4 A;  1Q9J A;  2CLA A;  1XMD A;  1T7O A;  2H3U A;  4G0B A;  3L60 A;  5KJT A;  1XL7 A;  1S5O A;  4G22 A;  3U9B A;  2FW3 A;  2BGH A;  4EYW A;  2E1T A; 
#chains in the Genus database with same CATH homology
 1EAA A;  1XMC A;  2RKT A;  4KEC A;  1DPB A;  1QCA A;  1PD5 A;  2IHW A;  4KE4 A;  2XHG A;  4CLA A;  3B2S A;  4HVM A;  1EAC A;  3U9F A;  5DU9 A;  5FAL A;  2II4 A;  1L5A A;  1EAD A;  1Q9J A;  2CLA A;  1XMD A;  5DUA A;  5KJS A;  4G0B A;  5FAN A;  3L60 A;  5KJT A;  1CLA A;  1XL8 A;  3CLA A;  3FP0 A;  1SCZ A;  3B30 A;  1XL7 A;  5T3E A;  4G22 A;  3MAE A;  4N72 A;  2II5 A;  1EAF A;  2I9D A;  3U9B A;  3FOT A;  1DPD A;  2BGH A;  2ZBA A;  1CIA A;  5KJV A;  2VSQ A;  4JN3 A;  1DPC A;  5KJU A;  4JN5 A;  1Q23 A;  2E1U A;  2XR7 A;  2RKV A;  1E2O A;  2E1T A;  1EAE A;  5KJW A;  2JGP A;  4G2M A;  1C4T A;  2E1V A;  1EAB A;  2II3 A;  1NOC B; 
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