1E2OA

Catalytic domain from dihydrolipoamide succinyltransferase
Total Genus 60

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
233
structure length
230
Chain Sequence
ARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTGLVTPVLRDVDTLGMADIEKKIKELAVKGDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (182-197)EMPTYS1 (200-208)AH2 (209-227)Updating...
connected with : NaN
publication title Crystal structure of the truncated cubic core component of the Escherichia coli 2-oxoglutarate dehydrogenase multienzyme complex.
pubmed doi rcsb
molecule tags Transferase
source organism Escherichia coli
molecule keywords DIHYDROLIPOAMIDE SUCCINYLTRANSFERASE
total genus 60
structure length 230
sequence length 233
ec nomenclature ec 2.3.1.61: Dihydrolipoyllysine-residue succinyltransferase.
pdb deposition date 1998-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00198 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.559.10 Alpha Beta 2-Layer Sandwich Chloramphenicol Acetyltransferase Chloramphenicol acetyltransferase-like domain 1e2oA00
5KJTA 1Q23A 2IHWA 1EADA 2BGHA 2II4A 2JGPA 3B30A 4G2MA 1C4TA 1PD5A 5KJUA 1SCZA 5KJSA 1EAFA 1EABA 5DU9A 2E1VA 1E2OA 4JN5A 2VSQA 2E1TA 5FANA 5KJVA 2RKVA 4G22A 1EAAA 4CLAA 1XMCA 3B2SA 3L60A 1CIAA 4G0BA 5FALA 1EAEA 3FOTA 4HVMA 1XL7A 2II5A 1Q9JA 1XL8A 2ZBAA 3FP0A 5DUAA 1DPBA 1NOCB 2XHGA 3CLAA 4N72A 1QCAA 3U9BA 1CLAA 1DPCA 4KECA 3MAEA 2RKTA 1DPDA 2XR7A 5T3EA 1XMDA 2I9DA 2E1UA 4JN3A 1L5AA 5KJWA 2CLAA 2II3A 4KE4A 3U9FA 1EACA
chains in the Genus database with same CATH superfamily
1Q23A 2IHWA 1C4TA 1PD5A 2FY4A 4G22A 1T7NA 3L60A 3B2SA 4G0BA 5FALA 2ZBAA 1NOCB 3CLAA 2FW3A 1NDIA 1CLAA 1S5OA 2H3UA 1XMDA 2E1UA 5KJWA 2CLAA 2II3A 1T1UA 3U9FA 2II4A 2BGHA 2JGPA 5KJUA 1SCZA 1EAFA 1EABA 2E1VA 2VSQA 5KJVA 2RKVA 4EYWA 1T7OA 2FY3A 1XL7A 1XL8A 2XHGA 4EPHA 1QCAA 3U9BA 2H3PA 3MAEA 1NDBA 2XR7A 5T3EA 2I9DA 4JN3A 5KJSA 5KJTA 1T7QA 3B30A 1NDFA 2DEBA 2H4TA 4JN5A 1E2OA 2H3WA 2E1TA 1EAAA 1EAEA 2II5A 1NM8A 3FP0A 4N72A 1Q6XA 2RKTA 1L5AA 1EACA 1EADA 4G2MA 5DU9A 2FY5A 5FANA 2FY2A 4CLAA 1XMCA 1CIAA 3FOTA 4HVMA 1Q9JA 2RCUA 2FYOA 5DUAA 1DPBA 4EP9A 1DPCA 4KECA 1DPDA 4KE4A
chains in the Genus database with same CATH topology
5KJTA 1Q23A 2IHWA 1EADA 2BGHA 2II4A 2JGPA 3B30A 4G2MA 1C4TA 1PD5A 5KJUA 1SCZA 5KJSA 1EAFA 1EABA 5DU9A 2E1VA 1E2OA 4JN5A 2VSQA 2E1TA 5FANA 5KJVA 2RKVA 4G22A 1EAAA 4CLAA 1XMCA 3B2SA 3L60A 1CIAA 4G0BA 5FALA 1EAEA 3FOTA 4HVMA 1XL7A 2II5A 1Q9JA 1XL8A 2ZBAA 3FP0A 5DUAA 1DPBA 1NOCB 2XHGA 3CLAA 4N72A 1QCAA 3U9BA 1CLAA 1DPCA 4KECA 3MAEA 2RKTA 1DPDA 2XR7A 5T3EA 1XMDA 2I9DA 2E1UA 4JN3A 1L5AA 5KJWA 2CLAA 2II3A 4KE4A 3U9FA 1EACA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KJT A;  1Q23 A;  2IHW A;  1EAD A;  2BGH A;  2II4 A;  2JGP A;  3B30 A;  4G2M A;  1C4T A;  1PD5 A;  5KJU A;  1SCZ A;  5KJS A;  1EAF A;  1EAB A;  5DU9 A;  2E1V A;  1E2O A;  4JN5 A;  2VSQ A;  2E1T A;  5FAN A;  5KJV A;  2RKV A;  4G22 A;  1EAA A;  4CLA A;  1XMC A;  3B2S A;  3L60 A;  1CIA A;  4G0B A;  5FAL A;  1EAE A;  3FOT A;  4HVM A;  1XL7 A;  2II5 A;  1Q9J A;  1XL8 A;  2ZBA A;  3FP0 A;  5DUA A;  1DPB A;  1NOC B;  2XHG A;  3CLA A;  4N72 A;  1QCA A;  3U9B A;  1CLA A;  1DPC A;  4KEC A;  3MAE A;  2RKT A;  1DPD A;  2XR7 A;  5T3E A;  1XMD A;  2I9D A;  2E1U A;  4JN3 A;  1L5A A;  5KJW A;  2CLA A;  2II3 A;  4KE4 A;  3U9F A;  1EAC A; 
#chains in the Genus database with same CATH topology
 1Q23 A;  2IHW A;  1C4T A;  1PD5 A;  2FY4 A;  4G22 A;  1T7N A;  3L60 A;  3B2S A;  4G0B A;  5FAL A;  2ZBA A;  1NOC B;  3CLA A;  2FW3 A;  1NDI A;  1CLA A;  1S5O A;  2H3U A;  1XMD A;  2E1U A;  5KJW A;  2CLA A;  2II3 A;  1T1U A;  3U9F A;  2II4 A;  2BGH A;  2JGP A;  5KJU A;  1SCZ A;  1EAF A;  1EAB A;  2E1V A;  2VSQ A;  5KJV A;  2RKV A;  4EYW A;  1T7O A;  2FY3 A;  1XL7 A;  1XL8 A;  2XHG A;  4EPH A;  1QCA A;  3U9B A;  2H3P A;  3MAE A;  1NDB A;  2XR7 A;  5T3E A;  2I9D A;  4JN3 A;  5KJS A;  5KJT A;  1T7Q A;  3B30 A;  1NDF A;  2DEB A;  2H4T A;  4JN5 A;  1E2O A;  2H3W A;  2E1T A;  1EAA A;  1EAE A;  2II5 A;  1NM8 A;  3FP0 A;  4N72 A;  1Q6X A;  2RKT A;  1L5A A;  1EAC A;  1EAD A;  4G2M A;  5DU9 A;  2FY5 A;  5FAN A;  2FY2 A;  4CLA A;  1XMC A;  1CIA A;  3FOT A;  4HVM A;  1Q9J A;  2RCU A;  2FYO A;  5DUA A;  1DPB A;  4EP9 A;  1DPC A;  4KEC A;  1DPD A;  4KE4 A; 
#chains in the Genus database with same CATH homology
 5KJT A;  1Q23 A;  2IHW A;  1EAD A;  2BGH A;  2II4 A;  2JGP A;  3B30 A;  4G2M A;  1C4T A;  1PD5 A;  5KJU A;  1SCZ A;  5KJS A;  1EAF A;  1EAB A;  5DU9 A;  2E1V A;  1E2O A;  4JN5 A;  2VSQ A;  2E1T A;  5FAN A;  5KJV A;  2RKV A;  4G22 A;  1EAA A;  4CLA A;  1XMC A;  3B2S A;  3L60 A;  1CIA A;  4G0B A;  5FAL A;  1EAE A;  3FOT A;  4HVM A;  1XL7 A;  2II5 A;  1Q9J A;  1XL8 A;  2ZBA A;  3FP0 A;  5DUA A;  1DPB A;  1NOC B;  2XHG A;  3CLA A;  4N72 A;  1QCA A;  3U9B A;  1CLA A;  1DPC A;  4KEC A;  3MAE A;  2RKT A;  1DPD A;  2XR7 A;  5T3E A;  1XMD A;  2I9D A;  2E1U A;  4JN3 A;  1L5A A;  5KJW A;  2CLA A;  2II3 A;  4KE4 A;  3U9F A;  1EAC A; 
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