1FFVB

Carbon monoxide dehydrogenase from hydrogenophaga pseudoflava
Total Genus 258
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
258
sequence length
797
structure length
795
Chain Sequence
DAEARELALAGMGASRLRKEDARFIQGKGNYVDDIKMPGMLHMDIVRAPIAHGRIKKIHKDAALAMPGVHAVLTAEDLKPLKLHWMPTLAGDVAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEYDELPVVIDPIDALKPDAPVLREDLAGKTSGAHGPREHHNHIFTWGAGDKAATDAVFANAPVTVSQHMYYPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVVSMLSGIPESKVRIVSPDIGGGFGNKVGIYPGYVCAIVASIVLGRPVKWVEDRVENISTTAFARDYHMDGELAATPDGKILGLRVNVVADHGAFDACADPTKFPAGLFHICSGSYDIPRAHCSVKGVYTNKAPGGVAYSFRVTEAVYLIERMVDVLAQKLNMDKAEIRAKNFIRKEQFPYTTQFGFEYDSGDYHTALKKVLDAVDYPALRAEQAARRADPNSPTLMGIGLVTFTEVVGAGPSKMCDILGVGMFDSCEIRIHPTGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQVEEGDTSTAPYGLGTYGSRSTPVAGAAIALAARKIHAKARKIAAHMLEVNENDLDWEVDRFKVKGDDSKFKTMADIAWQAYHQPPAGLEPGLEAVHYYDPPNFTYPFGIYLCVVDIDRATGETKVRRFYALDDCGTRINPMIIEGQIHGGLTEGYAVAMGQQMPFDAQGNLLGNTLMDYFLPTAVETPHWETDHTVTPSPHHPIGAKGVAESPHVGSIPTFTAAVVDAFAHVGVTHLDMPHTSYRVWKSLKEHNLAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The effect of intracellular molybdenum in Hydrogenophaga pseudoflava on the crystallographic structure of the seleno-molybdo-iron-sulfur flavoenzyme carbon monoxide dehydrogenase.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords CUTS, IRON-SULFUR PROTEIN OF CARBON MONOXIDE DEHYDROGENASE
total genus 258
structure length 795
sequence length 797
chains with identical sequence E
ec nomenclature ec 1.2.5.3: Aerobic carbon monoxide dehydrogenase.
pdb deposition date 2000-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
B PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1ffvB03
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1ffvB02
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1ffvB05
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1ffvB04
3.90.1170.50 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 1ffvB01
3FAHA 1N5XA 3NRZC 1V97A 1ZXIB 1N60B 4C80A 3B9JC 4US9A 1FFVB 3HRDB 3L4PA 3AM9A 1VDVA 3NVWC 2W3SB 2W3RB 1N61B 2W54B 3EUB4 3AMZA 3NS1C 3ETRC 1RM6A 1N5WB 3HRDA 3NVZC 3NVVC 3AN1A 1N62B 1VLBA 1N63B 4C7YA 3SR6C 1DGJA 3NVYC 1JROB 3FC4A 1SIJA 2E3TA 4C7ZA 1SB3A 1FIQC 2W55B 1FO4A 1JRPB 1FFUB 4USAA 1WYGA 4ZOHA 4US8A
chains in the Genus database with same CATH superfamily
3FAHA 3NRZC 1N60B 1Y69K 3B9JC 3I55H 4US9A 3CCRH 1VQPH 1VQ4H 1VDVA 2I1OA 1JJ2H 4UY8M 5HULA 3EUB4 1YIJH 2JBMA 3H5QA 2J0FA 1WKIA 2QA4H 3CCMH 1W2BH 3CPWH 3NVZC 3NVVC 1KQSH 3G71H 1N63B 3C2RA 1YTDA 2B7NA 5DM7J 3SR6C 3CCUH 3CF5J 1X1OA 4IOAJ 1QPQA 3C2FA 3CC4H 1JROB 5MLCO 1FO4A 4WCEJ 5GAGN 1JRPB 5GAEN 3AM9A 1AZYA 1QPRA 3PIOJ 4IO9J 1NVIE 4WFNJ 1VQ5H 3L0GA 1ZXIB 2DSJA 1N8RJ 1Q7YJ 3L4PA 1O4UA 1KC8J 4YEKA 1OTPA 2W54B 1VQNH 3RPFA 1VQKH 5HUOA 1RM6A 4IOCJ 4LHMA 5AYXA 4GA4A 3WO0A 3HRDA 4KWVA 2B7QA 1NJIJ 2Q5WE 1DGJA 3NVYC 3TQVA 3J7ZM 3FC4A 1SB3A 1FIQC 2W55B 1QPOA 1Q86J 1YI2H 1VQOH 1FFUB 5AYYA 3BIIE 1N5XA 1QVGH 1VQLH 2B7PA 2WP4A 2QEXH 1M90J 4GA6A 2OTLH 5EY3A 1YJNH 1FFVB 5HUPA 5JVGJ 5MPOC 1FMAE 3CC2H 3NVWC 1S72H 2W3SB 1Q81J 1WYGA 5DM6J 1VQ6H 3GNNA 4YYYA 3C2EA 3CCVH 3OW2H 3NS1C 1QPNA 4GA5A 5GAHN 1K8AJ 3CCJH 3CCEH 2QIEA 3AN1A 1N62B 3I56H 3C2VA 4EADA 3CD6H 1K73J 1K9MJ 2PA2A 1VQ9H 1VQ8H 1YTEA 1QVFH 2ZJQJ 1KD1J 3CCLH 3CC7H 4USAA 1YTKA 4XR5A 3DLLJ 4ZOHA 4US8A 1YJWH 1YJ9H 1V97A 4WFBJ 4I9AA 4C80A 3HRDB 4X46A 4AP8A 5JVHJ 1FM0E 2TPTA 2OTJH 2W3RB 1N61B 2I14A 3VMMA 5EP8A 5HL7J 3CMAH 3AMZA 1Q82J 1VQMH 1UOUA 3G6EH 1N5WB 1YHQH 1YITH 2ZJPJ 1BRWA 2ZJRJ 3C2OA 3CMEH 4WFAJ 3CCSH 1QAPA 4EAFA 1VLBA 3PIPJ 2WK6A 2WK5A 4C7YA 4KWWA 5H1SO 5GADN 4WF9J 3WNZA 1M1KJ 3G4SH 4C7ZA 1SIJA 2E3TA 2OMDA 3WO1A 4U67J 1NVJA 3PAJA 3CCQH 3CXCH 1VQ7H 3ETRC 5AN9F 5AYZA 1T3QB
chains in the Genus database with same CATH topology
3FAHA 1N5XA 3NRZC 1V97A 1ZXIB 1N60B 4C80A 3B9JC 4US9A 1FFVB 3HRDB 3L4PA 3AM9A 1VDVA 3NVWC 2W3SB 2W3RB 1N61B 2W54B 3EUB4 3AMZA 3NS1C 3ETRC 1RM6A 1N5WB 3HRDA 3NVZC 3NVVC 3AN1A 1N62B 1VLBA 1N63B 4C7YA 3SR6C 1DGJA 3NVYC 1JROB 3FC4A 1SIJA 2E3TA 4C7ZA 1SB3A 1FIQC 2W55B 1FO4A 1JRPB 1FFUB 4USAA 1WYGA 4ZOHA 4US8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FAH A;  1N5X A;  3NRZ C;  1V97 A;  1ZXI B;  1N60 B;  4C80 A;  3B9J C;  4US9 A;  1FFV B;  3HRD B;  3L4P A;  3AM9 A;  1VDV A;  3NVW C;  2W3S B;  2W3R B;  1N61 B;  2W54 B;  3EUB 4;  3AMZ A;  3NS1 C;  3ETR C;  1RM6 A;  1N5W B;  3HRD A;  3NVZ C;  3NVV C;  3AN1 A;  1N62 B;  1VLB A;  1N63 B;  4C7Y A;  3SR6 C;  1DGJ A;  3NVY C;  1JRO B;  3FC4 A;  1SIJ A;  2E3T A;  4C7Z A;  1SB3 A;  1FIQ C;  2W55 B;  1FO4 A;  1JRP B;  1FFU B;  4USA A;  1WYG A;  4ZOH A;  4US8 A; 
#chains in the Genus database with same CATH topology
 3FAH A;  3NRZ C;  1N60 B;  1Y69 K;  3B9J C;  3I55 H;  4US9 A;  3CCR H;  1VQP H;  1VQ4 H;  1VDV A;  2I1O A;  1JJ2 H;  4UY8 M;  5HUL A;  3EUB 4;  1YIJ H;  2JBM A;  3H5Q A;  2J0F A;  1WKI A;  2QA4 H;  3CCM H;  1W2B H;  3CPW H;  3NVZ C;  3NVV C;  1KQS H;  3G71 H;  1N63 B;  3C2R A;  1YTD A;  2B7N A;  5DM7 J;  3SR6 C;  3CCU H;  3CF5 J;  1X1O A;  4IOA J;  1QPQ A;  3C2F A;  3CC4 H;  1JRO B;  5MLC O;  1FO4 A;  4WCE J;  5GAG N;  1JRP B;  5GAE N;  3AM9 A;  1AZY A;  1QPR A;  3PIO J;  4IO9 J;  1NVI E;  4WFN J;  1VQ5 H;  3L0G A;  1ZXI B;  2DSJ A;  1N8R J;  1Q7Y J;  3L4P A;  1O4U A;  1KC8 J;  4YEK A;  1OTP A;  2W54 B;  1VQN H;  3RPF A;  1VQK H;  5HUO A;  1RM6 A;  4IOC J;  4LHM A;  5AYX A;  4GA4 A;  3WO0 A;  3HRD A;  4KWV A;  2B7Q A;  1NJI J;  2Q5W E;  1DGJ A;  3NVY C;  3TQV A;  3J7Z M;  3FC4 A;  1SB3 A;  1FIQ C;  2W55 B;  1QPO A;  1Q86 J;  1YI2 H;  1VQO H;  1FFU B;  5AYY A;  3BII E;  1N5X A;  1QVG H;  1VQL H;  2B7P A;  2WP4 A;  2QEX H;  1M90 J;  4GA6 A;  2OTL H;  5EY3 A;  1YJN H;  1FFV B;  5HUP A;  5JVG J;  5MPO C;  1FMA E;  3CC2 H;  3NVW C;  1S72 H;  2W3S B;  1Q81 J;  1WYG A;  5DM6 J;  1VQ6 H;  3GNN A;  4YYY A;  3C2E A;  3CCV H;  3OW2 H;  3NS1 C;  1QPN A;  4GA5 A;  5GAH N;  1K8A J;  3CCJ H;  3CCE H;  2QIE A;  3AN1 A;  1N62 B;  3I56 H;  3C2V A;  4EAD A;  3CD6 H;  1K73 J;  1K9M J;  2PA2 A;  1VQ9 H;  1VQ8 H;  1YTE A;  1QVF H;  2ZJQ J;  1KD1 J;  3CCL H;  3CC7 H;  4USA A;  1YTK A;  4XR5 A;  3DLL J;  4ZOH A;  4US8 A;  1YJW H;  1YJ9 H;  1V97 A;  4WFB J;  4I9A A;  4C80 A;  3HRD B;  4X46 A;  4AP8 A;  5JVH J;  1FM0 E;  2TPT A;  2OTJ H;  2W3R B;  1N61 B;  2I14 A;  3VMM A;  5EP8 A;  5HL7 J;  3CMA H;  3AMZ A;  1Q82 J;  1VQM H;  1UOU A;  3G6E H;  1N5W B;  1YHQ H;  1YIT H;  2ZJP J;  1BRW A;  2ZJR J;  3C2O A;  3CME H;  4WFA J;  3CCS H;  1QAP A;  4EAF A;  1VLB A;  3PIP J;  2WK6 A;  2WK5 A;  4C7Y A;  4KWW A;  5H1S O;  5GAD N;  4WF9 J;  3WNZ A;  1M1K J;  3G4S H;  4C7Z A;  1SIJ A;  2E3T A;  2OMD A;  3WO1 A;  4U67 J;  1NVJ A;  3PAJ A;  3CCQ H;  3CXC H;  1VQ7 H;  3ETR C;  5AN9 F;  5AYZ A;  1T3Q B; 
#chains in the Genus database with same CATH homology
 3FAH A;  1N5X A;  3NRZ C;  1V97 A;  1ZXI B;  1N60 B;  4C80 A;  3B9J C;  4US9 A;  1FFV B;  3HRD B;  3L4P A;  3AM9 A;  1VDV A;  3NVW C;  2W3S B;  2W3R B;  1N61 B;  2W54 B;  3EUB 4;  3AMZ A;  3NS1 C;  3ETR C;  1RM6 A;  1N5W B;  3HRD A;  3NVZ C;  3NVV C;  3AN1 A;  1N62 B;  1VLB A;  1N63 B;  4C7Y A;  3SR6 C;  1DGJ A;  3NVY C;  1JRO B;  3FC4 A;  1SIJ A;  2E3T A;  4C7Z A;  1SB3 A;  1FIQ C;  2W55 B;  1FO4 A;  1JRP B;  1FFU B;  4USA A;  1WYG A;  4ZOH A;  4US8 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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