1JROB

Crystal structure of xanthine dehydrogenase from rhodobacter capsulatus
Total Genus 265
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
265
sequence length
776
structure length
760
Chain Sequence
SVGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPHDNDASPAPSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITYAPRPAILTLDQALAADSRFEGGPVIWARGDVETALAGAAHLAEGCFEIGGQEHFYLEGQAALALPAEGGVVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPEKKTQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKLSWDRLRGQGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPPFLLGISAFLALHDACAACGPHWPDLQAPATPEAVLAAVRRAEGRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structures of the active and alloxanthine-inhibited forms of xanthine dehydrogenase from Rhodobacter capsulatus
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Rhodobacter capsulatus
molecule keywords xanthine dehydrogenase, chain A
total genus 265
structure length 760
sequence length 776
chains with identical sequence D, F, H
ec nomenclature ec 1.1.1.204: Transferred entry: 1.17.1.4.
pdb deposition date 2001-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
B PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1jroB02
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1jroB04
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1jroB03
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1jroB05
3.90.1170.50 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 1jroB01
2W54B 3L4PA 1VLBA 3FC4A 1VDVA 1N5XA 3AM9A 3ETRC 1FFVB 3NRZC 1SIJA 1FFUB 2W3SB 3B9JC 3HRDA 1RM6A 2E3TA 3NS1C 2W55B 3AMZA 3NVWC 2W3RB 4ZOHA 1FO4A 4USAA 3SR6C 1WYGA 3NVYC 1V97A 1N63B 4C80A 1ZXIB 3FAHA 1JROB 1SB3A 1N60B 1N61B 4C7ZA 3HRDB 1N62B 4C7YA 1N5WB 1FIQC 3NVZC 1DGJA 1JRPB 3AN1A 3NVVC 4US9A 3EUB4 4US8A
chains in the Genus database with same CATH superfamily
3C2EA 3CCUH 5AN9F 5MLCO 1VDVA 1N5XA 3ETRC 1AZYA 1FFVB 2ZJPJ 1FFUB 5EY3A 2ZJQJ 1YIJH 2WP4A 4YYYA 3NVWC 3CXCH 5EP8A 3I55H 3CCLH 3BIIE 1V97A 3CC4H 3J7ZM 3C2FA 1VQ5H 1NVJA 4I9AA 4C7ZA 3I56H 1VQ9H 2QEXH 4LHMA 3NVZC 2PA2A 1VQ7H 1JRPB 3CC7H 2TPTA 1Q7YJ 3AN1A 1VQ4H 3WO0A 2B7NA 3PAJA 5AYXA 2W54B 1T3QB 3FC4A 2JBMA 3AM9A 3CC2H 1SIJA 2ZJRJ 3RPFA 4WFNJ 4X46A 1VQKH 1UOUA 5HUOA 4USAA 1O4UA 3CCQH 1Y69K 3FAHA 1W2BH 1SB3A 5JVHJ 1K73J 1N61B 2DSJA 1N5WB 4IOCJ 1YITH 3CCSH 1QPRA 4GA5A 5DM7J 2Q5WE 1DGJA 1WKIA 1YTKA 3WNZA 3G6EH 2OMDA 2WK6A 1NJIJ 1QVFH 2B7PA 2QIEA 3NVVC 2I14A 4US9A 1YTEA 4US8A 5JVGJ 1QPQA 1YHQH 1N8RJ 1FM0E 3CCJH 5DM6J 4YEKA 1VQLH 1FMAE 4IOAJ 3VMMA 3G71H 3CMEH 3CF5J 3NRZC 3GNNA 3B9JC 1BRWA 5GAGN 1K8AJ 5HULA 3HRDA 1VQ8H 3CCMH 1RM6A 1YJWH 4XR5A 2E3TA 2W55B 3AMZA 4ZOHA 2W3RB 1FO4A 4EAFA 1KD1J 3SR6C 1QVGH 2QA4H 3NVYC 1QPNA 4WF9J 3CPWH 3CMAH 1N63B 1ZXIB 3H5QA 1Q82J 1JROB 1N60B 4KWVA 3HRDB 1N62B 1VQOH 4EADA 4UY8M 1X1OA 3C2RA 4IO9J 3C2VA 5AYZA 1VQPH 1YJ9H 1FIQC 5HUPA 1JJ2H 1M1KJ 4WFAJ 3L0GA 2I1OA 3WO1A 4WFBJ 3CD6H 3PIPJ 1QAPA 3OW2H 1VQMH 1S72H 4KWWA 3CCVH 3L4PA 1VLBA 5AYYA 5GAEN 1M90J 3TQVA 4U67J 1QPOA 2W3SB 2OTJH 5H1SO 3NS1C 1VQNH 2J0FA 5MPOC 4WCEJ 1OTPA 4GA4A 1WYGA 2B7QA 4C80A 3PIOJ 1VQ6H 3CCEH 4GA6A 1KC8J 1YTDA 3CCRH 4C7YA 2OTLH 2WK5A 5GAHN 3DLLJ 4AP8A 5HL7J 3C2OA 1YI2H 1YJNH 1K9MJ 1NVIE 1Q81J 1Q86J 5GADN 3G4SH 3EUB4 1KQSH
chains in the Genus database with same CATH topology
2W54B 3L4PA 1VLBA 3FC4A 1VDVA 1N5XA 3AM9A 3ETRC 1FFVB 3NRZC 1SIJA 1FFUB 2W3SB 3B9JC 3HRDA 1RM6A 2E3TA 3NS1C 2W55B 3AMZA 3NVWC 2W3RB 4ZOHA 1FO4A 4USAA 3SR6C 1WYGA 3NVYC 1V97A 1N63B 4C80A 1ZXIB 3FAHA 1JROB 1SB3A 1N60B 1N61B 4C7ZA 3HRDB 1N62B 4C7YA 1N5WB 1FIQC 3NVZC 1DGJA 1JRPB 3AN1A 3NVVC 4US9A 3EUB4 4US8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2W54 B;  3L4P A;  1VLB A;  3FC4 A;  1VDV A;  1N5X A;  3AM9 A;  3ETR C;  1FFV B;  3NRZ C;  1SIJ A;  1FFU B;  2W3S B;  3B9J C;  3HRD A;  1RM6 A;  2E3T A;  3NS1 C;  2W55 B;  3AMZ A;  3NVW C;  2W3R B;  4ZOH A;  1FO4 A;  4USA A;  3SR6 C;  1WYG A;  3NVY C;  1V97 A;  1N63 B;  4C80 A;  1ZXI B;  3FAH A;  1JRO B;  1SB3 A;  1N60 B;  1N61 B;  4C7Z A;  3HRD B;  1N62 B;  4C7Y A;  1N5W B;  1FIQ C;  3NVZ C;  1DGJ A;  1JRP B;  3AN1 A;  3NVV C;  4US9 A;  3EUB 4;  4US8 A; 
#chains in the Genus database with same CATH topology
 3C2E A;  3CCU H;  5AN9 F;  5MLC O;  1VDV A;  1N5X A;  3ETR C;  1AZY A;  1FFV B;  2ZJP J;  1FFU B;  5EY3 A;  2ZJQ J;  1YIJ H;  2WP4 A;  4YYY A;  3NVW C;  3CXC H;  5EP8 A;  3I55 H;  3CCL H;  3BII E;  1V97 A;  3CC4 H;  3J7Z M;  3C2F A;  1VQ5 H;  1NVJ A;  4I9A A;  4C7Z A;  3I56 H;  1VQ9 H;  2QEX H;  4LHM A;  3NVZ C;  2PA2 A;  1VQ7 H;  1JRP B;  3CC7 H;  2TPT A;  1Q7Y J;  3AN1 A;  1VQ4 H;  3WO0 A;  2B7N A;  3PAJ A;  5AYX A;  2W54 B;  1T3Q B;  3FC4 A;  2JBM A;  3AM9 A;  3CC2 H;  1SIJ A;  2ZJR J;  3RPF A;  4WFN J;  4X46 A;  1VQK H;  1UOU A;  5HUO A;  4USA A;  1O4U A;  3CCQ H;  1Y69 K;  3FAH A;  1W2B H;  1SB3 A;  5JVH J;  1K73 J;  1N61 B;  2DSJ A;  1N5W B;  4IOC J;  1YIT H;  3CCS H;  1QPR A;  4GA5 A;  5DM7 J;  2Q5W E;  1DGJ A;  1WKI A;  1YTK A;  3WNZ A;  3G6E H;  2OMD A;  2WK6 A;  1NJI J;  1QVF H;  2B7P A;  2QIE A;  3NVV C;  2I14 A;  4US9 A;  1YTE A;  4US8 A;  5JVG J;  1QPQ A;  1YHQ H;  1N8R J;  1FM0 E;  3CCJ H;  5DM6 J;  4YEK A;  1VQL H;  1FMA E;  4IOA J;  3VMM A;  3G71 H;  3CME H;  3CF5 J;  3NRZ C;  3GNN A;  3B9J C;  1BRW A;  5GAG N;  1K8A J;  5HUL A;  3HRD A;  1VQ8 H;  3CCM H;  1RM6 A;  1YJW H;  4XR5 A;  2E3T A;  2W55 B;  3AMZ A;  4ZOH A;  2W3R B;  1FO4 A;  4EAF A;  1KD1 J;  3SR6 C;  1QVG H;  2QA4 H;  3NVY C;  1QPN A;  4WF9 J;  3CPW H;  3CMA H;  1N63 B;  1ZXI B;  3H5Q A;  1Q82 J;  1JRO B;  1N60 B;  4KWV A;  3HRD B;  1N62 B;  1VQO H;  4EAD A;  4UY8 M;  1X1O A;  3C2R A;  4IO9 J;  3C2V A;  5AYZ A;  1VQP H;  1YJ9 H;  1FIQ C;  5HUP A;  1JJ2 H;  1M1K J;  4WFA J;  3L0G A;  2I1O A;  3WO1 A;  4WFB J;  3CD6 H;  3PIP J;  1QAP A;  3OW2 H;  1VQM H;  1S72 H;  4KWW A;  3CCV H;  3L4P A;  1VLB A;  5AYY A;  5GAE N;  1M90 J;  3TQV A;  4U67 J;  1QPO A;  2W3S B;  2OTJ H;  5H1S O;  3NS1 C;  1VQN H;  2J0F A;  5MPO C;  4WCE J;  1OTP A;  4GA4 A;  1WYG A;  2B7Q A;  4C80 A;  3PIO J;  1VQ6 H;  3CCE H;  4GA6 A;  1KC8 J;  1YTD A;  3CCR H;  4C7Y A;  2OTL H;  2WK5 A;  5GAH N;  3DLL J;  4AP8 A;  5HL7 J;  3C2O A;  1YI2 H;  1YJN H;  1K9M J;  1NVI E;  1Q81 J;  1Q86 J;  5GAD N;  3G4S H;  3EUB 4;  1KQS H; 
#chains in the Genus database with same CATH homology
 2W54 B;  3L4P A;  1VLB A;  3FC4 A;  1VDV A;  1N5X A;  3AM9 A;  3ETR C;  1FFV B;  3NRZ C;  1SIJ A;  1FFU B;  2W3S B;  3B9J C;  3HRD A;  1RM6 A;  2E3T A;  3NS1 C;  2W55 B;  3AMZ A;  3NVW C;  2W3R B;  4ZOH A;  1FO4 A;  4USA A;  3SR6 C;  1WYG A;  3NVY C;  1V97 A;  1N63 B;  4C80 A;  1ZXI B;  3FAH A;  1JRO B;  1SB3 A;  1N60 B;  1N61 B;  4C7Z A;  3HRD B;  1N62 B;  4C7Y A;  1N5W B;  1FIQ C;  3NVZ C;  1DGJ A;  1JRP B;  3AN1 A;  3NVV C;  4US9 A;  3EUB 4;  4US8 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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