The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
56
|
sequence length |
234
|
structure length |
234
|
Chain Sequence |
GSHMRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the 16S rRNA pseudouridine synthase RsuA bound to uracil and UMP.
pubmed rcsb |
| molecule tags |
Lyase
|
| source organism |
Escherichia coli
|
| molecule keywords |
RIBOSOMAL SMALL SUBUNIT PSEUDOURIDINE SYNTHASE A
|
| total genus |
56
|
| structure length |
234
|
| sequence length |
234
|
| ec nomenclature |
ec
5.4.99.19: 16S rRNA pseudouridine(516) synthase. |
| pdb deposition date | 2002-01-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00849 | PseudoU_synth_2 | RNA pseudouridylate synthase |
| A | PF01479 | S4 | S4 domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A | RNA-binding S4 domain | ||
| Alpha Beta | 2-Layer Sandwich | Pseudouridine synthase | Pseudouridine synthase |
#chains in the Genus database with same CATH superfamily 1IBK D; 2RFK A; 1N34 D; 2UUA D; 3HJY A; 2E5L D; 4OUD A; 4LF8 D; 4B3R D; 2IST A; 1ZE2 A; 4DV6 D; 4GKJ D; 1KSV A; 1K8W A; 2AB4 A; 1N33 D; 1H3F A; 2VQF D; 4DV4 D; 3HJW A; 1ZE1 A; 2VQE D; 3LWO A; 3HAX A; 1KSK A; 4JV5 D; 1PRZ A; 4YY3 D; 2AUS A; 2EY4 A; 4JI7 D; 3MQK A; 4DR3 D; 4JYA D; 4X65 D; 1P9K A; 1ZL3 A; 1N36 D; 2KTL A; 4DUY D; 1J5E D; 1JH3 A; 2I82 A; 4JI8 D; 4JI6 D; 1IBM D; 2APO A; 4X62 D; 2UUB D; 4KHP D; 1HNZ D; 3LWQ A; 4B3S D; 1C06 A; 1XPI A; 4NXM D; 4LF5 D; 3HP7 A; 4DR7 D; 3T1H D; 1XMQ D; 1R3F A; 1IBL D; 4X66 D; 4OX9 D; 1SGV A; 4JI2 D; 3LWP A; 4YHH D; 4DUZ D; 5BR8 D; 1V9K A; 4LFC D; 4DR1 D; 4GKK D; 2F4V D; 2HHH D; 4DR2 D; 4K0K D; 4DV7 D; 4AQY D; 3KBG A; 2ZM6 D; 1XNR D; 4LGT A; 4LAB A; 4DV1 D; 4DR6 D; 1C05 A; 4LF7 D; 2HVY A; 4LFB D; 1HNW D; 1N32 D; 4X64 D; 2K6P A; 2UU9 D; 5LMN D; 1R3E A; 4DV2 D; 4JI1 D; 2UXD D; 4LF4 D; 4DV5 D; 1VIO A; 4B3M D; 4DV3 D; 4JI0 D; 1FJG D; 1FKA D; 5IWA D; 3UAI A; 3U28 A; 2UXC D; 3DH3 A; 4DR5 D; 4JI5 D; 4DV0 D; 4JI3 D; 1XNQ D; 4LFA D; 5LMU D; 2UXB D; 4NXN D; 1I94 D; 3LWR A; 1KSL A; 1DM9 A; 4LF6 D; 4B3T D; 1QYU A; 1V9F A; 2JAN A; 4DR4 D; 3T1Y D; 4LF9 D; 3OTO D; 1HNX D; 3LWV A; 1H3E A; 1XMO D; 2UUC D; 4JI4 D; 1HR0 D; #chains in the Genus database with same CATH topology 4II2 A; 1IBK D; 4NNJ A; 2RFK A; 5IT9 E; 1N34 D; 2UUA D; 3J80 E; 2E5L D; 3HJY A; 4OUD A; 4LF8 D; 4B3R D; 2IST A; 1Y8X B; 1ZE2 A; 4DV6 D; 4GKJ D; 3J7A F; 1KSV A; 1K8W A; 1SZW A; 2AB4 A; 1N33 D; 1H3F A; 2VQF D; 4DV4 D; 3HJW A; 1ZE1 A; 2VQE D; 3LWO A; 3HAX A; 1KSK A; 4JV5 D; 1PRZ A; 4YY3 D; 2AUS A; 2EY4 A; 4JI7 D; 3MQK A; 4DR3 D; 4JYA D; 3KYD B; 5FLX E; 1P9K A; 4X65 D; 1ZL3 A; 1N36 D; 2KTL A; 4DUY D; 1J5E D; 1JH3 A; 2I82 A; 4JI8 D; 4JI6 D; 1IBM D; 2APO A; 4X62 D; 2UUB D; 4KHP D; 3ONH A; 1HNZ D; 3ONG A; 1Y8R B; 1SB7 A; 5FQ2 B; 1Z2Z A; 3LWQ A; 5KNL A; 4B3S D; 1C06 A; 1XPI A; 4NXM D; 2ZTB A; 4LF5 D; 1Y8Q B; 4W5V B; 3HP7 A; 4DR7 D; 3T1H D; 1XMQ D; 1R3F A; 3J81 E; 1IBL D; 4X66 D; 4OX9 D; 1SGV A; 4JI2 D; 3LWP A; 3KYC B; 4YHH D; 4DUZ D; 5BR8 D; 1V9K A; 5A2Q E; 4DR1 D; 4LFC D; 2F4V D; 4GKK D; 2HHH D; 4DR2 D; 4K0K D; 4DV7 D; 4AQY D; 3CMM A; 3KBG A; 2ZM6 D; 1XNR D; 4LGT A; 4LAB A; 4DV1 D; 4DR6 D; 1C05 A; 4LF7 D; 2HVY A; 4LFB D; 1HNW D; 1N32 D; 4X64 D; 2I1S A; 2K6P A; 2UU9 D; 5LMN D; 1SI7 A; 4DV2 D; 1R3E A; 4JI1 D; 2UXD D; 4LF4 D; 4DV5 D; 1VIO A; 4B3M D; 4DV3 D; 4JI0 D; 1FJG D; 1FKA D; 5IWA D; 3UAI A; 3U28 A; 2UXC D; 5LL6 S; 3DH3 A; 4DR5 D; 4DV0 D; 4JI5 D; 4JI3 D; 3FN1 A; 1XNQ D; 4LFA D; 5LMU D; 2UXB D; 4II3 A; 4NXN D; 4JI4 D; 3LWR A; 1KSL A; 1DM9 A; 2LQ7 A; 4LF6 D; 4B3T D; 1QYU A; 1V9F A; 2JAN A; 2NVU B; 4DR4 D; 3T1Y D; 4LF9 D; 3JAM E; 3OTO D; 1HNX D; 3LWV A; 1H3E A; 1XMO D; 2UUC D; 1I94 D; 1HR0 D; #chains in the Genus database with same CATH homology 1IBK D; 2RFK A; 1N34 D; 2UUA D; 3HJY A; 2E5L D; 4OUD A; 4LF8 D; 4B3R D; 2IST A; 1ZE2 A; 4DV6 D; 4GKJ D; 1KSV A; 1K8W A; 1SZW A; 2AB4 A; 1N33 D; 1H3F A; 2VQF D; 4DV4 D; 3HJW A; 1ZE1 A; 2VQE D; 3LWO A; 3HAX A; 1KSK A; 4JV5 D; 1PRZ A; 4YY3 D; 2AUS A; 2EY4 A; 4JI7 D; 3MQK A; 4DR3 D; 4JYA D; 4X65 D; 1P9K A; 1ZL3 A; 1N36 D; 2KTL A; 4DUY D; 1J5E D; 1JH3 A; 2I82 A; 4JI8 D; 4JI6 D; 1IBM D; 2APO A; 4X62 D; 2UUB D; 4KHP D; 1HNZ D; 1SB7 A; 1Z2Z A; 3LWQ A; 4B3S D; 1C06 A; 1XPI A; 4NXM D; 4LF5 D; 3HP7 A; 4DR7 D; 3T1H D; 1XMQ D; 1R3F A; 1IBL D; 4X66 D; 4OX9 D; 1SGV A; 4JI2 D; 3LWP A; 4YHH D; 4DUZ D; 5BR8 D; 1V9K A; 4LFC D; 4DR1 D; 4GKK D; 2F4V D; 2HHH D; 4DR2 D; 4K0K D; 4DV7 D; 4AQY D; 3KBG A; 2ZM6 D; 1XNR D; 4LGT A; 4LAB A; 4DV1 D; 4DR6 D; 1C05 A; 4LF7 D; 2HVY A; 4LFB D; 1HNW D; 1N32 D; 4X64 D; 2K6P A; 2UU9 D; 5LMN D; 1SI7 A; 4DV2 D; 1R3E A; 4JI1 D; 2UXD D; 4LF4 D; 4DV5 D; 1VIO A; 4B3M D; 4DV3 D; 4JI0 D; 1FJG D; 1FKA D; 5IWA D; 3UAI A; 3U28 A; 2UXC D; 3DH3 A; 4DR5 D; 4JI5 D; 4DV0 D; 4JI3 D; 1XNQ D; 4LFA D; 5LMU D; 2UXB D; 4NXN D; 1I94 D; 3LWR A; 1KSL A; 1DM9 A; 4LF6 D; 4B3T D; 1QYU A; 1V9F A; 2JAN A; 4DR4 D; 3T1Y D; 4LF9 D; 3OTO D; 1HNX D; 3LWV A; 1H3E A; 1XMO D; 2UUC D; 4JI4 D; 1HR0 D;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
