1KSV | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	234
structure length	234
Chain Sequence	GSHMRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 234 atoms

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234 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Escherichia coli
publication title	Structure of the 16S rRNA pseudouridine synthase RsuA bound to uracil and UMP. pubmed rcsb
molecule keywords	RIBOSOMAL SMALL SUBUNIT PSEUDOURIDINE SYNTHASE A
total genus	57
structure length	234
sequence length	234
ec nomenclature	ec 5.4.99.19: 16S rRNA pseudouridine(516) synthase.
pdb deposition date	2002-01-14

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00849	PseudoU_synth_2	RNA pseudouridylate synthase
A	PF01479	S4	S4 domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.290.10	Alpha Beta	Roll	Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A	RNA-binding S4 domain	1ksvA01
3.30.2350.10	Alpha Beta	2-Layer Sandwich	Pseudouridine synthase	Pseudouridine synthase	1ksvA02

1H3FA 4B3TD 1P9KA 2APOA 4X64D 4DV7D 4DUYD 1HNXD 2F4VD 1FJGD 1HNWD 2HVYA 1N33D 2VQED 4DV0D 1I94D 2JANA 3OTOD 3HP7A 1HR0D 4X65D 4GKJD 4DV2D 2UXBD 2KTLA 5IWAD 4JI7D 4JI4D 2AUSA 4JI2D 3MQKA 4LGTA 1FKAD 4LFCD 1H3EA 5BR8D 4X62D 4LF7D 4LF5D 4LF8D 3LWVA 4DR5D 4LABA 1XNRD 3LWQA 5LMND 1QYUA 1SGVA 4DV3D 4JI5D 3HJYA 1IBLD 4DR7D 1K8WA 1KSKA 2K6PA 2UXCD 4LFAD 1XMOD 4GKKD 2AB4A 1N32D 2UUAD 3T1HD 1ZE1A 4B3RD 2E5LD 3KBGA 3DH3A 1N34D 4JV5D 1IBKD 5LMUD 1N36D 2UU9D 4JI3D 4DR4D 3HJWA 1C05A 3T1YD 4B3MD 4LF6D 1IBMD 4YY3D 4JI8D 4DV1D 4NXMD 4OX9D 4OUDA 1V9FA 4X66D 4JI1D 1XNQD 2EY4A 4DR3D 1XMQD 4YHHD 4LFBD 3UAIA 2I82A 2UXDD 4DR1D 1KSLA 4DR6D 1PRZA 1XPIA 4KHPD 4DUZD 3HAXA 4LF9D 1R3EA 4JI6D 4AQYD 3LWOA 4DV6D 2ISTA 4JYAD 4DR2D 4NXND 4LF4D 1VIOA 1JH3A 3LWPA 4DV4D 1HNZD 4JI0D 1C06A 3LWRA 1V9KA 1KSVA 3U28A 4DV5D 4B3SD 2UUBD 1DM9A 1ZE2A 1R3FA 1ZL3A 2ZM6D 2UUCD 4K0KD 2VQFD 2RFKA 1J5ED 2HHHD
chains in the Genus database with same CATH superfamily

1H3FA 4B3TD 1P9KA 2APOA 4X64D 4DV7D 4DUYD 1HNXD 1Z2ZA 2F4VD 1FJGD 1HNWD 2HVYA 1N33D 1SI7A 2VQED 4DV0D 1I94D 2JANA 3OTOD 2I1SA 3HP7A 1HR0D 4X65D 4GKJD 4DV2D 2UXBD 3ONHA 2KTLA 5IWAD 4JI7D 4NNJA 4JI4D 2AUSA 4JI2D 3MQKA 5A2QE 4LGTA 1FKAD 4LFCD 1H3EA 5BR8D 4X62D 4LF7D 4LF5D 4LF8D 3LWVA 4DR5D 4LABA 1XNRD 3LWQA 5LMND 1QYUA 1SGVA 4DV3D 3J80E 4JI5D 1Y8RB 3HJYA 1IBLD 4DR7D 1K8WA 1KSKA 2K6PA 2UXCD 4LFAD 1XMOD 4GKKD 2AB4A 1N32D 2UUAD 3CMMA 3T1HD 1SZWA 1ZE1A 2ZTBA 5LL6S 4B3RD 3KYCB 2E5LD 3KBGA 3DH3A 1N34D 4JV5D 1Y8XB 2LQ7A 3J81E 1IBKD 5LMUD 1SB7A 5FLXE 1N36D 2UU9D 3JAME 4JI3D 4DR4D 3HJWA 1C05A 3T1YD 4B3MD 5FQ2B 4W5VB 1IBMD 4LF6D 4YY3D 4JI8D 4DV1D 4NXMD 4OX9D 4OUDA 1V9FA 5IT9E 4X66D 4JI1D 1XNQD 3KYDB 2EY4A 4DR3D 1XMQD 4YHHD 4LFBD 3UAIA 2I82A 2UXDD 4DR1D 1KSLA 4DR6D 1PRZA 1XPIA 4KHPD 4DUZD 5KNLA 3HAXA 4LF9D 3FN1A 1R3EA 4JI6D 4AQYD 3LWOA 4DV6D 2ISTA 4JYAD 4DR2D 4II3A 4NXND 4LF4D 1VIOA 1JH3A 3LWPA 4DV4D 1HNZD 4JI0D 1C06A 3LWRA 1V9KA 2NVUB 1KSVA 1Y8QB 3U28A 4DV5D 4B3SD 3J7AF 2UUBD 1DM9A 1ZE2A 1R3FA 1ZL3A 2ZM6D 2UUCD 4K0KD 2VQFD 3ONGA 1J5ED 2RFKA 4II2A 2HHHD
chains in the Genus database with same CATH topology

1H3FA 4B3TD 1P9KA 2APOA 4X64D 4DV7D 4DUYD 1HNXD 1Z2ZA 2F4VD 1FJGD 1HNWD 2HVYA 1N33D 1SI7A 2VQED 4DV0D 1I94D 2JANA 3OTOD 3HP7A 1HR0D 4X65D 4GKJD 4DV2D 2UXBD 2KTLA 5IWAD 4JI7D 4JI4D 2AUSA 4JI2D 3MQKA 4LGTA 1FKAD 4LFCD 1H3EA 5BR8D 4X62D 4LF7D 4LF5D 4LF8D 3LWVA 4DR5D 4LABA 1XNRD 3LWQA 5LMND 1QYUA 1SGVA 4DV3D 4JI5D 3HJYA 1IBLD 4DR7D 1K8WA 1KSKA 2K6PA 2UXCD 4LFAD 1XMOD 4GKKD 2AB4A 1N32D 2UUAD 3T1HD 1SZWA 1ZE1A 4B3RD 2E5LD 3KBGA 3DH3A 1N34D 4JV5D 1IBKD 5LMUD 1SB7A 1N36D 2UU9D 4JI3D 4DR4D 3HJWA 1C05A 3T1YD 4B3MD 4LF6D 1IBMD 4YY3D 4JI8D 4DV1D 4NXMD 4OX9D 4OUDA 1V9FA 4X66D 4JI1D 1XNQD 2EY4A 4DR3D 1XMQD 4YHHD 4LFBD 3UAIA 2I82A 2UXDD 4DR1D 1KSLA 4DR6D 1PRZA 1XPIA 4KHPD 4DUZD 3HAXA 4LF9D 1R3EA 4JI6D 4AQYD 3LWOA 4DV6D 2ISTA 4JYAD 4DR2D 4NXND 4LF4D 1VIOA 1JH3A 3LWPA 4DV4D 1HNZD 4JI0D 1C06A 3LWRA 1V9KA 1KSVA 3U28A 4DV5D 4B3SD 2UUBD 1DM9A 1ZE2A 1R3FA 1ZL3A 2ZM6D 2UUCD 4K0KD 2VQFD 2RFKA 1J5ED 2HHHD
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1H3F A;  4B3T D;  1P9K A;  2APO A;  4X64 D;  4DV7 D;  4DUY D;  1HNX D;  2F4V D;  1FJG D;  1HNW D;  2HVY A;  1N33 D;  2VQE D;  4DV0 D;  1I94 D;  2JAN A;  3OTO D;  3HP7 A;  1HR0 D;  4X65 D;  4GKJ D;  4DV2 D;  2UXB D;  2KTL A;  5IWA D;  4JI7 D;  4JI4 D;  2AUS A;  4JI2 D;  3MQK A;  4LGT A;  1FKA D;  4LFC D;  1H3E A;  5BR8 D;  4X62 D;  4LF7 D;  4LF5 D;  4LF8 D;  3LWV A;  4DR5 D;  4LAB A;  1XNR D;  3LWQ A;  5LMN D;  1QYU A;  1SGV A;  4DV3 D;  4JI5 D;  3HJY A;  1IBL D;  4DR7 D;  1K8W A;  1KSK A;  2K6P A;  2UXC D;  4LFA D;  1XMO D;  4GKK D;  2AB4 A;  1N32 D;  2UUA D;  3T1H D;  1ZE1 A;  4B3R D;  2E5L D;  3KBG A;  3DH3 A;  1N34 D;  4JV5 D;  1IBK D;  5LMU D;  1N36 D;  2UU9 D;  4JI3 D;  4DR4 D;  3HJW A;  1C05 A;  3T1Y D;  4B3M D;  4LF6 D;  1IBM D;  4YY3 D;  4JI8 D;  4DV1 D;  4NXM D;  4OX9 D;  4OUD A;  1V9F A;  4X66 D;  4JI1 D;  1XNQ D;  2EY4 A;  4DR3 D;  1XMQ D;  4YHH D;  4LFB D;  3UAI A;  2I82 A;  2UXD D;  4DR1 D;  1KSL A;  4DR6 D;  1PRZ A;  1XPI A;  4KHP D;  4DUZ D;  3HAX A;  4LF9 D;  1R3E A;  4JI6 D;  4AQY D;  3LWO A;  4DV6 D;  2IST A;  4JYA D;  4DR2 D;  4NXN D;  4LF4 D;  1VIO A;  1JH3 A;  3LWP A;  4DV4 D;  1HNZ D;  4JI0 D;  1C06 A;  3LWR A;  1V9K A;  1KSV A;  3U28 A;  4DV5 D;  4B3S D;  2UUB D;  1DM9 A;  1ZE2 A;  1R3F A;  1ZL3 A;  2ZM6 D;  2UUC D;  4K0K D;  2VQF D;  2RFK A;  1J5E D;  2HHH D; 
#chains in the Genus database with same CATH topology
 1H3F A;  4B3T D;  1P9K A;  2APO A;  4X64 D;  4DV7 D;  4DUY D;  1HNX D;  1Z2Z A;  2F4V D;  1FJG D;  1HNW D;  2HVY A;  1N33 D;  1SI7 A;  2VQE D;  4DV0 D;  1I94 D;  2JAN A;  3OTO D;  2I1S A;  3HP7 A;  1HR0 D;  4X65 D;  4GKJ D;  4DV2 D;  2UXB D;  3ONH A;  2KTL A;  5IWA D;  4JI7 D;  4NNJ A;  4JI4 D;  2AUS A;  4JI2 D;  3MQK A;  5A2Q E;  4LGT A;  1FKA D;  4LFC D;  1H3E A;  5BR8 D;  4X62 D;  4LF7 D;  4LF5 D;  4LF8 D;  3LWV A;  4DR5 D;  4LAB A;  1XNR D;  3LWQ A;  5LMN D;  1QYU A;  1SGV A;  4DV3 D;  3J80 E;  4JI5 D;  1Y8R B;  3HJY A;  1IBL D;  4DR7 D;  1K8W A;  1KSK A;  2K6P A;  2UXC D;  4LFA D;  1XMO D;  4GKK D;  2AB4 A;  1N32 D;  2UUA D;  3CMM A;  3T1H D;  1SZW A;  1ZE1 A;  2ZTB A;  5LL6 S;  4B3R D;  3KYC B;  2E5L D;  3KBG A;  3DH3 A;  1N34 D;  4JV5 D;  1Y8X B;  2LQ7 A;  3J81 E;  1IBK D;  5LMU D;  1SB7 A;  5FLX E;  1N36 D;  2UU9 D;  3JAM E;  4JI3 D;  4DR4 D;  3HJW A;  1C05 A;  3T1Y D;  4B3M D;  5FQ2 B;  4W5V B;  1IBM D;  4LF6 D;  4YY3 D;  4JI8 D;  4DV1 D;  4NXM D;  4OX9 D;  4OUD A;  1V9F A;  5IT9 E;  4X66 D;  4JI1 D;  1XNQ D;  3KYD B;  2EY4 A;  4DR3 D;  1XMQ D;  4YHH D;  4LFB D;  3UAI A;  2I82 A;  2UXD D;  4DR1 D;  1KSL A;  4DR6 D;  1PRZ A;  1XPI A;  4KHP D;  4DUZ D;  5KNL A;  3HAX A;  4LF9 D;  3FN1 A;  1R3E A;  4JI6 D;  4AQY D;  3LWO A;  4DV6 D;  2IST A;  4JYA D;  4DR2 D;  4II3 A;  4NXN D;  4LF4 D;  1VIO A;  1JH3 A;  3LWP A;  4DV4 D;  1HNZ D;  4JI0 D;  1C06 A;  3LWR A;  1V9K A;  2NVU B;  1KSV A;  1Y8Q B;  3U28 A;  4DV5 D;  4B3S D;  3J7A F;  2UUB D;  1DM9 A;  1ZE2 A;  1R3F A;  1ZL3 A;  2ZM6 D;  2UUC D;  4K0K D;  2VQF D;  3ONG A;  1J5E D;  2RFK A;  4II2 A;  2HHH D; 
#chains in the Genus database with same CATH homology
 1H3F A;  4B3T D;  1P9K A;  2APO A;  4X64 D;  4DV7 D;  4DUY D;  1HNX D;  1Z2Z A;  2F4V D;  1FJG D;  1HNW D;  2HVY A;  1N33 D;  1SI7 A;  2VQE D;  4DV0 D;  1I94 D;  2JAN A;  3OTO D;  3HP7 A;  1HR0 D;  4X65 D;  4GKJ D;  4DV2 D;  2UXB D;  2KTL A;  5IWA D;  4JI7 D;  4JI4 D;  2AUS A;  4JI2 D;  3MQK A;  4LGT A;  1FKA D;  4LFC D;  1H3E A;  5BR8 D;  4X62 D;  4LF7 D;  4LF5 D;  4LF8 D;  3LWV A;  4DR5 D;  4LAB A;  1XNR D;  3LWQ A;  5LMN D;  1QYU A;  1SGV A;  4DV3 D;  4JI5 D;  3HJY A;  1IBL D;  4DR7 D;  1K8W A;  1KSK A;  2K6P A;  2UXC D;  4LFA D;  1XMO D;  4GKK D;  2AB4 A;  1N32 D;  2UUA D;  3T1H D;  1SZW A;  1ZE1 A;  4B3R D;  2E5L D;  3KBG A;  3DH3 A;  1N34 D;  4JV5 D;  1IBK D;  5LMU D;  1SB7 A;  1N36 D;  2UU9 D;  4JI3 D;  4DR4 D;  3HJW A;  1C05 A;  3T1Y D;  4B3M D;  4LF6 D;  1IBM D;  4YY3 D;  4JI8 D;  4DV1 D;  4NXM D;  4OX9 D;  4OUD A;  1V9F A;  4X66 D;  4JI1 D;  1XNQ D;  2EY4 A;  4DR3 D;  1XMQ D;  4YHH D;  4LFB D;  3UAI A;  2I82 A;  2UXD D;  4DR1 D;  1KSL A;  4DR6 D;  1PRZ A;  1XPI A;  4KHP D;  4DUZ D;  3HAX A;  4LF9 D;  1R3E A;  4JI6 D;  4AQY D;  3LWO A;  4DV6 D;  2IST A;  4JYA D;  4DR2 D;  4NXN D;  4LF4 D;  1VIO A;  1JH3 A;  3LWP A;  4DV4 D;  1HNZ D;  4JI0 D;  1C06 A;  3LWR A;  1V9K A;  1KSV A;  3U28 A;  4DV5 D;  4B3S D;  2UUB D;  1DM9 A;  1ZE2 A;  1R3F A;  1ZL3 A;  2ZM6 D;  2UUC D;  4K0K D;  2VQF D;  2RFK A;  1J5E D;  2HHH D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1KSVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations