1N60B

Crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-inactivated form
Total Genus 279
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
279
sequence length
803
structure length
803
Chain Sequence
VEPTSAERAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQLGLHV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Catalysis at a dinuclear [CuSMo(=O)OH] cluster in a CO dehydrogenase resolved at 1.1-A resolution
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords Carbon monoxide dehydrogenase small chain
total genus 279
structure length 803
sequence length 803
chains with identical sequence E
ec nomenclature ec 1.2.5.3: Aerobic carbon monoxide dehydrogenase.
pdb deposition date 2002-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
B PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n60B03
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n60B02
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n60B05
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1n60B04
3.90.1170.50 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 1n60B01
1ZXIB 3HRDA 1SB3A 4US9A 4C80A 2W3RB 3FC4A 1V97A 3HRDB 1N5WB 2W3SB 3NVWC 2W54B 3FAHA 3ETRC 1FIQC 4C7YA 3SR6C 1SIJA 3L4PA 1RM6A 1VLBA 3NVZC 4US8A 4USAA 3NVYC 1FO4A 2W55B 3NRZC 3AM9A 1N5XA 1VDVA 4ZOHA 1N61B 1N62B 1DGJA 3B9JC 1N60B 4C7ZA 2E3TA 3AMZA 1N63B 1FFVB 3AN1A 3NS1C 3NVVC 1JRPB 1JROB 1WYGA 1FFUB 3EUB4
chains in the Genus database with same CATH superfamily
2QA4H 1ZXIB 2Q5WE 2J0FA 2WK5A 4C80A 2W3RB 2TPTA 4IOAJ 3HRDB 5DM6J 1VQLH 1YHQH 5GAEN 1VQ7H 2PA2A 2W54B 2B7PA 3FAHA 4XR5A 3CPWH 3CCJH 4WFNJ 4UY8M 1FIQC 1YTDA 5H1SO 3BIIE 1RM6A 3NVYC 1VQNH 1T3QB 1N8RJ 2OTJH 3AM9A 1M1KJ 1YJ9H 1N61B 1N62B 3WO1A 4AP8A 2ZJPJ 3CC7H 3DLLJ 4C7ZA 1NVJA 3AMZA 4EADA 1K9MJ 1FFVB 1VQ4H 1QPRA 5AYYA 3L0GA 1FMAE 2OTLH 2ZJRJ 4GA4A 1K8AJ 1SB3A 4I9AA 5GAGN 4US9A 4IO9J 3CD6H 1X1OA 5MPOC 3WO0A 1YIJH 3G71H 1V97A 1N5WB 1UOUA 5HULA 3PIPJ 3CCVH 1Q7YJ 1YJNH 1W2BH 3CCMH 3CCLH 1KD1J 2I14A 3PAJA 4EAFA 4WFBJ 4C7YA 5MLCO 3L4PA 2I1OA 4US8A 2W55B 3CC4H 5DM7J 1KQSH 3B9JC 5AYXA 1N60B 1VQOH 1BRWA 3TQVA 1YITH 3AN1A 2QEXH 4GA6A 5GADN 5EY3A 3CCUH 1QVGH 1VQPH 3SR6C 2DSJA 3EUB4 3I55H 1Y69K 2WP4A 3FC4A 3C2VA 3RPFA 2B7NA 1WKIA 4WF9J 3I56H 3CXCH 3G6EH 5JVGJ 4WFAJ 3ETRC 4LHMA 3CC2H 1VQ9H 4KWVA 1SIJA 1QPNA 1VLBA 4IOCJ 1Q81J 1K73J 3NRZC 5EP8A 5HUOA 3WNZA 1N5XA 3CCSH 1VDVA 4ZOHA 3CF5J 1VQ8H 2QIEA 1DGJA 1M90J 5JVHJ 1N63B 1QVFH 3C2FA 1FM0E 1NVIE 2OMDA 4YEKA 1VQKH 1WYGA 5HUPA 1YJWH 1VQ6H 1FFUB 4YYYA 3HRDA 1Q86J 2WK6A 1S72H 4X46A 4WCEJ 2ZJQJ 1YI2H 1JJ2H 1YTEA 3C2EA 3VMMA 3PIOJ 3H5QA 3CMAH 3CMEH 2W3SB 3NVWC 3OW2H 3CCRH 3C2RA 3J7ZM 4KWWA 1VQMH 3G4SH 1KC8J 1VQ5H 1Q82J 3NVZC 4USAA 1FO4A 1AZYA 5AYZA 4GA5A 3CCQH 3C2OA 1O4UA 1QAPA 5GAHN 1QPQA 3GNNA 3CCEH 1YTKA 2E3TA 1NJIJ 5HL7J 1OTPA 1QPOA 4U67J 3NS1C 3NVVC 1JRPB 1JROB 2B7QA 2JBMA 5AN9F
chains in the Genus database with same CATH topology
1ZXIB 3HRDA 1SB3A 4US9A 4C80A 2W3RB 3FC4A 1V97A 3HRDB 1N5WB 2W3SB 3NVWC 2W54B 3FAHA 3ETRC 1FIQC 4C7YA 3SR6C 1SIJA 3L4PA 1RM6A 1VLBA 3NVZC 4US8A 4USAA 3NVYC 1FO4A 2W55B 3NRZC 3AM9A 1N5XA 1VDVA 4ZOHA 1N61B 1N62B 1DGJA 3B9JC 1N60B 4C7ZA 2E3TA 3AMZA 1N63B 1FFVB 3AN1A 3NS1C 3NVVC 1JRPB 1JROB 1WYGA 1FFUB 3EUB4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZXI B;  3HRD A;  1SB3 A;  4US9 A;  4C80 A;  2W3R B;  3FC4 A;  1V97 A;  3HRD B;  1N5W B;  2W3S B;  3NVW C;  2W54 B;  3FAH A;  3ETR C;  1FIQ C;  4C7Y A;  3SR6 C;  1SIJ A;  3L4P A;  1RM6 A;  1VLB A;  3NVZ C;  4US8 A;  4USA A;  3NVY C;  1FO4 A;  2W55 B;  3NRZ C;  3AM9 A;  1N5X A;  1VDV A;  4ZOH A;  1N61 B;  1N62 B;  1DGJ A;  3B9J C;  1N60 B;  4C7Z A;  2E3T A;  3AMZ A;  1N63 B;  1FFV B;  3AN1 A;  3NS1 C;  3NVV C;  1JRP B;  1JRO B;  1WYG A;  1FFU B;  3EUB 4; 
#chains in the Genus database with same CATH topology
 2QA4 H;  1ZXI B;  2Q5W E;  2J0F A;  2WK5 A;  4C80 A;  2W3R B;  2TPT A;  4IOA J;  3HRD B;  5DM6 J;  1VQL H;  1YHQ H;  5GAE N;  1VQ7 H;  2PA2 A;  2W54 B;  2B7P A;  3FAH A;  4XR5 A;  3CPW H;  3CCJ H;  4WFN J;  4UY8 M;  1FIQ C;  1YTD A;  5H1S O;  3BII E;  1RM6 A;  3NVY C;  1VQN H;  1T3Q B;  1N8R J;  2OTJ H;  3AM9 A;  1M1K J;  1YJ9 H;  1N61 B;  1N62 B;  3WO1 A;  4AP8 A;  2ZJP J;  3CC7 H;  3DLL J;  4C7Z A;  1NVJ A;  3AMZ A;  4EAD A;  1K9M J;  1FFV B;  1VQ4 H;  1QPR A;  5AYY A;  3L0G A;  1FMA E;  2OTL H;  2ZJR J;  4GA4 A;  1K8A J;  1SB3 A;  4I9A A;  5GAG N;  4US9 A;  4IO9 J;  3CD6 H;  1X1O A;  5MPO C;  3WO0 A;  1YIJ H;  3G71 H;  1V97 A;  1N5W B;  1UOU A;  5HUL A;  3PIP J;  3CCV H;  1Q7Y J;  1YJN H;  1W2B H;  3CCM H;  3CCL H;  1KD1 J;  2I14 A;  3PAJ A;  4EAF A;  4WFB J;  4C7Y A;  5MLC O;  3L4P A;  2I1O A;  4US8 A;  2W55 B;  3CC4 H;  5DM7 J;  1KQS H;  3B9J C;  5AYX A;  1N60 B;  1VQO H;  1BRW A;  3TQV A;  1YIT H;  3AN1 A;  2QEX H;  4GA6 A;  5GAD N;  5EY3 A;  3CCU H;  1QVG H;  1VQP H;  3SR6 C;  2DSJ A;  3EUB 4;  3I55 H;  1Y69 K;  2WP4 A;  3FC4 A;  3C2V A;  3RPF A;  2B7N A;  1WKI A;  4WF9 J;  3I56 H;  3CXC H;  3G6E H;  5JVG J;  4WFA J;  3ETR C;  4LHM A;  3CC2 H;  1VQ9 H;  4KWV A;  1SIJ A;  1QPN A;  1VLB A;  4IOC J;  1Q81 J;  1K73 J;  3NRZ C;  5EP8 A;  5HUO A;  3WNZ A;  1N5X A;  3CCS H;  1VDV A;  4ZOH A;  3CF5 J;  1VQ8 H;  2QIE A;  1DGJ A;  1M90 J;  5JVH J;  1N63 B;  1QVF H;  3C2F A;  1FM0 E;  1NVI E;  2OMD A;  4YEK A;  1VQK H;  1WYG A;  5HUP A;  1YJW H;  1VQ6 H;  1FFU B;  4YYY A;  3HRD A;  1Q86 J;  2WK6 A;  1S72 H;  4X46 A;  4WCE J;  2ZJQ J;  1YI2 H;  1JJ2 H;  1YTE A;  3C2E A;  3VMM A;  3PIO J;  3H5Q A;  3CMA H;  3CME H;  2W3S B;  3NVW C;  3OW2 H;  3CCR H;  3C2R A;  3J7Z M;  4KWW A;  1VQM H;  3G4S H;  1KC8 J;  1VQ5 H;  1Q82 J;  3NVZ C;  4USA A;  1FO4 A;  1AZY A;  5AYZ A;  4GA5 A;  3CCQ H;  3C2O A;  1O4U A;  1QAP A;  5GAH N;  1QPQ A;  3GNN A;  3CCE H;  1YTK A;  2E3T A;  1NJI J;  5HL7 J;  1OTP A;  1QPO A;  4U67 J;  3NS1 C;  3NVV C;  1JRP B;  1JRO B;  2B7Q A;  2JBM A;  5AN9 F; 
#chains in the Genus database with same CATH homology
 1ZXI B;  3HRD A;  1SB3 A;  4US9 A;  4C80 A;  2W3R B;  3FC4 A;  1V97 A;  3HRD B;  1N5W B;  2W3S B;  3NVW C;  2W54 B;  3FAH A;  3ETR C;  1FIQ C;  4C7Y A;  3SR6 C;  1SIJ A;  3L4P A;  1RM6 A;  1VLB A;  3NVZ C;  4US8 A;  4USA A;  3NVY C;  1FO4 A;  2W55 B;  3NRZ C;  3AM9 A;  1N5X A;  1VDV A;  4ZOH A;  1N61 B;  1N62 B;  1DGJ A;  3B9J C;  1N60 B;  4C7Z A;  2E3T A;  3AMZ A;  1N63 B;  1FFV B;  3AN1 A;  3NS1 C;  3NVV C;  1JRP B;  1JRO B;  1WYG A;  1FFU B;  3EUB 4; 
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